ISDge10
- Family IS200/IS605
- Group IS605
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_008025 | ND | Deinococcus geothermalis | Deinococcus geothermalis DSM 11300 Deinococcus geothermalis DSM 11300 plasmid pDGEO02 |
DNA section
IS Length : 1757 bp
Ends
Left end : CAAAACGGGGTCTGGGGCGGAAAACCAACCCCTTCAGGGGTTGGATGCAGAGTCCCAGCCGGCCGTCAGGGCGGGCAGGGCTGAGGCTGTTGCGCCGTGT II struct. : Yes
Right end : GCGGAGACGTTAAACGCTCGGGGAGAGGGTGTCAGACCTGCGATAGCGGGCAGCCCTCGATGAAGCGAGAATCCAACGGCTTTAGCCGTTGGAGTGTCAA II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
GGCGCGCGCTC | TTAT | GTGTTGGAGT | TCAA |
DNA sequence
CAAAACGGGGTCTGGGGCGGAAAACCAACCCCTTCAGGGGTTGGATGCAGAGTCCCAGCCGGCCGTCAGGGCGGGCAGGGCTGAGGCTGTTGCGCCGTGT
TAGTAGGGGCTTGCGACAAACGCCGAGCCGTGTCAGTCTCTCTTCGTGGCTGACCAGTACAAACACGCCAACACCACGGTGTATCTGCTGAACTACCACT
TCGTGTTCATCCCGAAGCGGCGGCGGAAGGTGCTGGTCGGCCCGGTCGAGACGCGCCTGAAGGAAGTGCTGGCGGAGAAGTGTGCGGAGATGAAGTGGGA
CATTCTCGCCCTTGAGGTGATGCCTGACCACGTTCACCTGTTCCTTGCCGCCGACCCCGCCACCGCGCCCAATCAGGTGATGCACTTGCTGAAGGGCTAC
ACGTCGCGGATTCTCCGGCAGGAGTTCCCGCACCTGAACACGCTCCCCGCCCTGTGGACCCGGAGCTACTTCGTGTCCACGGCTGGGGCGGTGAGTGGGG
CCACCATCCAAAAGTACATCGCCGCTCAGAAGACGAGGGACTGAATGACGACGCACCGCAAGGTCTACAGGTATCGGATTGAGCCGACCCCGGTTCAAGA
GTCGAAGCTGTACATGCTGGCGGGAAGTCGGCGCTTCGTCTTCAACTGGGCTCTTGCGCGTCGAAGGGAACACTACGCCGAAACGGGCAAGACCCTGGGG
TACAACGCTCAGGCGGGAGAGTTGACGGCCCTGAAGAACCAGGAGGAAACCTCCTGGCTGAAGGAATCGGACAGCCAGCTTCTCCAGCAGGCCCTCAAGG
ACGTGGAGCGGGCCTTCGTCAACTTCTTTGAGAAGCGGGCGAGGTTCCCCCGGTTCAAGAGCAAAAAGACGGATACTCCGCGCTTCCGTATTCCCCAGCG
GGTGCGGATAGAGGGGAGCCGTGTGTATGTCCCGAAGGTGGGATGGGTTAAGCTCCGCAAGTCTCAGGAGATAGAGGGCAAGACCAAGAGCGCGACGTTC
AAGCGGGAGGCAGACGGTCACTGGTACGTCTTGCTCGTCTCCGAGTTTGAGATGCCCGATGTACCGCTGCCCCCCGTCCCTGAGTCCGAGGTGGTCGGGA
TTGACCTCGGCCTGAAGGATTTCTACGTGTTGTCCGACGGCGGGCGGAAAGAGGCCCCGAGGTTTGCCCGCAAGGGGCAGCGGAAACTCCGCCGCGCTGC
CCGTCGTCACTCCAAATGCACCAGGGGGAGCAACCGCAAGGCGAAGGCCAAGCGGAAGCTCGCCCGTGTTCACCGCCAGATTGCGAATCAGAGAAAGGAC
TTCGTTCACAAGGCCACCTCCGGTCTTGTTCAGCAGTACCAGGGTTTCTGCATCGAGAACTTGAGCATCAAGGGGATGGCGAAAACCAAGCTGTCCAAGA
GCGTTCTCGACGCCGCCCTGGGAGAGTTTCGCCGCCAGCTCGCCTACAAGGCCCAGTGGCACCGGAAGTGGCTGGCGGTCATAGACCGCTGGTTTCCGTC
CAGCAAGCTGTGTGGGGAATGCGGCAGCATCAACGCAGACCTGACCCTGAGTGACCGGGAATGGACGTGCGAATGTGGAGCGGTTCACGACCGCGACCTC
AACGCCGCCCGGAACATCAAGCGGGAAGGGCTTTCGCAAATCGTCGTCGCGGGGCACGCGGAGACGTTAAACGCTCGGGGAGAGGGTGTCAGACCTGCGA
TAGCGGGCAGCCCTCGATGAAGCGAGAATCCAACGGCTTTAGCCGTTGGAGTGTCAA
TAGTAGGGGCTTGCGACAAACGCCGAGCCGTGTCAGTCTCTCTTCGTGGCTGACCAGTACAAACACGCCAACACCACGGTGTATCTGCTGAACTACCACT
TCGTGTTCATCCCGAAGCGGCGGCGGAAGGTGCTGGTCGGCCCGGTCGAGACGCGCCTGAAGGAAGTGCTGGCGGAGAAGTGTGCGGAGATGAAGTGGGA
CATTCTCGCCCTTGAGGTGATGCCTGACCACGTTCACCTGTTCCTTGCCGCCGACCCCGCCACCGCGCCCAATCAGGTGATGCACTTGCTGAAGGGCTAC
ACGTCGCGGATTCTCCGGCAGGAGTTCCCGCACCTGAACACGCTCCCCGCCCTGTGGACCCGGAGCTACTTCGTGTCCACGGCTGGGGCGGTGAGTGGGG
CCACCATCCAAAAGTACATCGCCGCTCAGAAGACGAGGGACTGAATGACGACGCACCGCAAGGTCTACAGGTATCGGATTGAGCCGACCCCGGTTCAAGA
GTCGAAGCTGTACATGCTGGCGGGAAGTCGGCGCTTCGTCTTCAACTGGGCTCTTGCGCGTCGAAGGGAACACTACGCCGAAACGGGCAAGACCCTGGGG
TACAACGCTCAGGCGGGAGAGTTGACGGCCCTGAAGAACCAGGAGGAAACCTCCTGGCTGAAGGAATCGGACAGCCAGCTTCTCCAGCAGGCCCTCAAGG
ACGTGGAGCGGGCCTTCGTCAACTTCTTTGAGAAGCGGGCGAGGTTCCCCCGGTTCAAGAGCAAAAAGACGGATACTCCGCGCTTCCGTATTCCCCAGCG
GGTGCGGATAGAGGGGAGCCGTGTGTATGTCCCGAAGGTGGGATGGGTTAAGCTCCGCAAGTCTCAGGAGATAGAGGGCAAGACCAAGAGCGCGACGTTC
AAGCGGGAGGCAGACGGTCACTGGTACGTCTTGCTCGTCTCCGAGTTTGAGATGCCCGATGTACCGCTGCCCCCCGTCCCTGAGTCCGAGGTGGTCGGGA
TTGACCTCGGCCTGAAGGATTTCTACGTGTTGTCCGACGGCGGGCGGAAAGAGGCCCCGAGGTTTGCCCGCAAGGGGCAGCGGAAACTCCGCCGCGCTGC
CCGTCGTCACTCCAAATGCACCAGGGGGAGCAACCGCAAGGCGAAGGCCAAGCGGAAGCTCGCCCGTGTTCACCGCCAGATTGCGAATCAGAGAAAGGAC
TTCGTTCACAAGGCCACCTCCGGTCTTGTTCAGCAGTACCAGGGTTTCTGCATCGAGAACTTGAGCATCAAGGGGATGGCGAAAACCAAGCTGTCCAAGA
GCGTTCTCGACGCCGCCCTGGGAGAGTTTCGCCGCCAGCTCGCCTACAAGGCCCAGTGGCACCGGAAGTGGCTGGCGGTCATAGACCGCTGGTTTCCGTC
CAGCAAGCTGTGTGGGGAATGCGGCAGCATCAACGCAGACCTGACCCTGAGTGACCGGGAATGGACGTGCGAATGTGGAGCGGTTCACGACCGCGACCTC
AACGCCGCCCGGAACATCAAGCGGGAAGGGCTTTCGCAAATCGTCGTCGCGGGGCACGCGGAGACGTTAAACGCTCGGGGAGAGGGTGTCAGACCTGCGA
TAGCGGGCAGCCCTCGATGAAGCGAGAATCCAACGGCTTTAGCCGTTGGAGTGTCAA
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
399 bp | 132 aa | 146 | 544 | + | No |
Chemistry : Y1
ORF sequence :
MADQYKHANTTVYLLNYHFVFIPKRRRKVLVGPVETRLKEVLAEKCAEMKWDILALEVMPDHVHLFLAADPATAPNQVMHLLKGYTSRILRQEFPHLNTL
PALWTRSYFVSTAGAVSGATIQKYIAAQKTRD
PALWTRSYFVSTAGAVSGATIQKYIAAQKTRD
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1176 bp | 391 aa | 545 | 1720 | + | No |
AG : TnpB
ORF sequence :
MTTHRKVYRYRIEPTPVQESKLYMLAGSRRFVFNWALARRREHYAETGKTLGYNAQAGELTALKNQEETSWLKESDSQLLQQALKDVERAFVNFFEKRAR
FPRFKSKKTDTPRFRIPQRVRIEGSRVYVPKVGWVKLRKSQEIEGKTKSATFKREADGHWYVLLVSEFEMPDVPLPPVPESEVVGIDLGLKDFYVLSDGG
RKEAPRFARKGQRKLRRAARRHSKCTRGSNRKAKAKRKLARVHRQIANQRKDFVHKATSGLVQQYQGFCIENLSIKGMAKTKLSKSVLDAALGEFRRQLA
YKAQWHRKWLAVIDRWFPSSKLCGECGSINADLTLSDREWTCECGAVHDRDLNAARNIKREGLSQIVVAGHAETLNARGEGVRPAIAGSPR
FPRFKSKKTDTPRFRIPQRVRIEGSRVYVPKVGWVKLRKSQEIEGKTKSATFKREADGHWYVLLVSEFEMPDVPLPPVPESEVVGIDLGLKDFYVLSDGG
RKEAPRFARKGQRKLRRAARRHSKCTRGSNRKAKAKRKLARVHRQIANQRKDFVHKATSGLVQQYQGFCIENLSIKGMAKTKLSKSVLDAALGEFRRQLA
YKAQWHRKWLAVIDRWFPSSKLCGECGSINADLTLSDREWTCECGAVHDRDLNAARNIKREGLSQIVVAGHAETLNARGEGVRPAIAGSPR
Blast result :
Comments
ISDge10 is 69%(ORFA) aa similar to ISClte2 and 61% (ORF B) to ISDra2.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Brettin,T., Bruce,D., Han,C., Tapia,R., Saunders,E., Gilna,P., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Daly,M.J., Fredrickson,J.K., Makarova,K.S., Gaidamakova,E.K., Zhai,M. and Richardson,P. US DOE Joint Genome Institute. (2006) Direct submission GenBank.