ISDge10

  • Family IS200/IS605
  • Group IS605
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_008025 ND Deinococcus geothermalis
Deinococcus geothermalis DSM 11300
Deinococcus geothermalis DSM 11300 plasmid pDGEO02
DNA section
IS Length : 1757 bp

Ends


Left end : CAAAACGGGGTCTGGGGCGGAAAACCAACCCCTTCAGGGGTTGGATGCAGAGTCCCAGCCGGCCGTCAGGGCGGGCAGGGCTGAGGCTGTTGCGCCGTGT II struct. : Yes
Right end : GCGGAGACGTTAAACGCTCGGGGAGAGGGTGTCAGACCTGCGATAGCGGGCAGCCCTCGATGAAGCGAGAATCCAACGGCTTTAGCCGTTGGAGTGTCAA II struct. : Yes

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
GGCGCGCGCTCTTATGTGTTGGAGTTCAA

DNA sequence

CAAAACGGGGTCTGGGGCGGAAAACCAACCCCTTCAGGGGTTGGATGCAGAGTCCCAGCCGGCCGTCAGGGCGGGCAGGGCTGAGGCTGTTGCGCCGTGT
TAGTAGGGGCTTGCGACAAACGCCGAGCCGTGTCAGTCTCTCTTCGTGGCTGACCAGTACAAACACGCCAACACCACGGTGTATCTGCTGAACTACCACT
TCGTGTTCATCCCGAAGCGGCGGCGGAAGGTGCTGGTCGGCCCGGTCGAGACGCGCCTGAAGGAAGTGCTGGCGGAGAAGTGTGCGGAGATGAAGTGGGA
CATTCTCGCCCTTGAGGTGATGCCTGACCACGTTCACCTGTTCCTTGCCGCCGACCCCGCCACCGCGCCCAATCAGGTGATGCACTTGCTGAAGGGCTAC
ACGTCGCGGATTCTCCGGCAGGAGTTCCCGCACCTGAACACGCTCCCCGCCCTGTGGACCCGGAGCTACTTCGTGTCCACGGCTGGGGCGGTGAGTGGGG
CCACCATCCAAAAGTACATCGCCGCTCAGAAGACGAGGGACTGAATGACGACGCACCGCAAGGTCTACAGGTATCGGATTGAGCCGACCCCGGTTCAAGA
GTCGAAGCTGTACATGCTGGCGGGAAGTCGGCGCTTCGTCTTCAACTGGGCTCTTGCGCGTCGAAGGGAACACTACGCCGAAACGGGCAAGACCCTGGGG
TACAACGCTCAGGCGGGAGAGTTGACGGCCCTGAAGAACCAGGAGGAAACCTCCTGGCTGAAGGAATCGGACAGCCAGCTTCTCCAGCAGGCCCTCAAGG
ACGTGGAGCGGGCCTTCGTCAACTTCTTTGAGAAGCGGGCGAGGTTCCCCCGGTTCAAGAGCAAAAAGACGGATACTCCGCGCTTCCGTATTCCCCAGCG
GGTGCGGATAGAGGGGAGCCGTGTGTATGTCCCGAAGGTGGGATGGGTTAAGCTCCGCAAGTCTCAGGAGATAGAGGGCAAGACCAAGAGCGCGACGTTC
AAGCGGGAGGCAGACGGTCACTGGTACGTCTTGCTCGTCTCCGAGTTTGAGATGCCCGATGTACCGCTGCCCCCCGTCCCTGAGTCCGAGGTGGTCGGGA
TTGACCTCGGCCTGAAGGATTTCTACGTGTTGTCCGACGGCGGGCGGAAAGAGGCCCCGAGGTTTGCCCGCAAGGGGCAGCGGAAACTCCGCCGCGCTGC
CCGTCGTCACTCCAAATGCACCAGGGGGAGCAACCGCAAGGCGAAGGCCAAGCGGAAGCTCGCCCGTGTTCACCGCCAGATTGCGAATCAGAGAAAGGAC
TTCGTTCACAAGGCCACCTCCGGTCTTGTTCAGCAGTACCAGGGTTTCTGCATCGAGAACTTGAGCATCAAGGGGATGGCGAAAACCAAGCTGTCCAAGA
GCGTTCTCGACGCCGCCCTGGGAGAGTTTCGCCGCCAGCTCGCCTACAAGGCCCAGTGGCACCGGAAGTGGCTGGCGGTCATAGACCGCTGGTTTCCGTC
CAGCAAGCTGTGTGGGGAATGCGGCAGCATCAACGCAGACCTGACCCTGAGTGACCGGGAATGGACGTGCGAATGTGGAGCGGTTCACGACCGCGACCTC
AACGCCGCCCGGAACATCAAGCGGGAAGGGCTTTCGCAAATCGTCGTCGCGGGGCACGCGGAGACGTTAAACGCTCGGGGAGAGGGTGTCAGACCTGCGA
TAGCGGGCAGCCCTCGATGAAGCGAGAATCCAACGGCTTTAGCCGTTGGAGTGTCAA
Protein section
ORF number : 2

 

ORF 1
LengthBeginEndStrandFusion ORF
399 bp132 aa146544+No
ORF function : Transposase
Chemistry : Y1

ORF sequence :

MADQYKHANTTVYLLNYHFVFIPKRRRKVLVGPVETRLKEVLAEKCAEMKWDILALEVMPDHVHLFLAADPATAPNQVMHLLKGYTSRILRQEFPHLNTL
PALWTRSYFVSTAGAVSGATIQKYIAAQKTRD

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
1176 bp391 aa5451720+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MTTHRKVYRYRIEPTPVQESKLYMLAGSRRFVFNWALARRREHYAETGKTLGYNAQAGELTALKNQEETSWLKESDSQLLQQALKDVERAFVNFFEKRAR
FPRFKSKKTDTPRFRIPQRVRIEGSRVYVPKVGWVKLRKSQEIEGKTKSATFKREADGHWYVLLVSEFEMPDVPLPPVPESEVVGIDLGLKDFYVLSDGG
RKEAPRFARKGQRKLRRAARRHSKCTRGSNRKAKAKRKLARVHRQIANQRKDFVHKATSGLVQQYQGFCIENLSIKGMAKTKLSKSVLDAALGEFRRQLA
YKAQWHRKWLAVIDRWFPSSKLCGECGSINADLTLSDREWTCECGAVHDRDLNAARNIKREGLSQIVVAGHAETLNARGEGVRPAIAGSPR

 

Blast result :
Comments
ISDge10 is 69%(ORFA) aa similar to ISClte2 and 61% (ORF B) to ISDra2.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Brettin,T., Bruce,D., Han,C., Tapia,R., Saunders,E., Gilna,P., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Daly,M.J., Fredrickson,J.K., Makarova,K.S., Gaidamakova,E.K., Zhai,M. and Richardson,P. US DOE Joint Genome Institute. (2006) Direct submission GenBank.