ISDge9
- Family IS4
- Group IS10
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_008025 | ND | Deinococcus geothermalis | Deinococcus geothermalis DSM 11300 Deinococcus geothermalis DSM 11300 plasmid 1 |
DNA section
IS Length : 1127 bp
Ends
IR Length : 17
IRL : CTCTCTAGGGGTCAAAACTCAGATGGAGACTTGAGAAGTCGGCTCCTGTA
IRR : CTCTCTAGGGGTCAAAAGTGGCGAGAAAGTCGGGAAACGCGCGTGCAGCC
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| GAGGACTTAGGAG | GACAGAGTG | GTCTGGGCGCAG | 9 |
DNA sequence
CTCTCTAGGGGTCAAAACTCAGATGGAGACTTGAGAAGTCGGCTCCTGTACGGTGTTTTCTGCGATGAAAGACACCCGGAGCCGACCCGCTCAGTCTAGC
CTCACTGCCCTGCTTGCTGAGCACTTCCCGCTGGATCCTCGTCGCCTGACCGTCTTGAGCGCCCTGATCTTGGCCGTGATTCAGGCACGAAGCGTCGTTC
TTTACCAGCTCGTCCAGATCGTTGACCTTCCCGGCTCAAACGACACCGTGTACCAACGCCTGAAGCGCTTCGTGCAATTCGCACTTCCTGATCTCCTGGT
TGCCCGCTTCGTCCTGGCCCATCTGCGAGACGAGCAGCATCTGCTGCTCGTCCTGGACCGCACCAATTGGAAGCTCGGTCAGCAGGACATCAATATTCTC
CTGCTCAGTGTGCGGTGGCAGACCTTCAGTTTCCCGCTCGTCTGGACCTTGTTGCCGCATAGCGGCAACAGCAACATGGCGACCCGCATCGCGCTGGTCG
AACGCCTGCTCCCATTGCTCCAGGGCAAGACACTCTTCCTGGCCGCTGACCGAGAGTTCGTCGGTGGGGAGTGGTTCGTGGCCTTGCGCCGCATGAGCCT
TTCTCCCGTGATCCGTTTGCGGGCTGACAGCATGGTCGAGGGGTCCCCAGTCTGGGTCAGATTCAAGAAACTCAAGCCGGGTGAAGTGCGGGTCTGGTAC
AAGCCCACTCACGTCTACGGCGTGACGCTGCGCGTTCTAGCGTGCCAGAACGTCCACGGCCAGACTCTCTTCCTGGCTTACCAAGGCCATGCTGAAAAAG
CCCTGAAACGTTACGCGCTGCGCTGGACAGCAGAAAACATGCATCAGGCGCTGAAATCCAGGGGCTTTTTTCTCGAAAGCACTCACCTGACTGATCCCAG
TCGGGTTTCCACGCTCCTGGCCGTGGTCGCACTGGCCTTTGTATGGTGCTGTTTAGTGGGAGAGTTTGAGCAGCAGCGTGACCCGTCACGCTGCCTCAGG
CACGGCTATCCCCCCAAAAGCCTCTTCAGACGTGGCCTGGATGCCCTTCGCGCCGTGCTGACCAAGCCCAACCGTGGGGCTGCACGCGCGTTTCCCGACT
TTCTCGCCACTTTTGACCCCTAGAGAG
CTCACTGCCCTGCTTGCTGAGCACTTCCCGCTGGATCCTCGTCGCCTGACCGTCTTGAGCGCCCTGATCTTGGCCGTGATTCAGGCACGAAGCGTCGTTC
TTTACCAGCTCGTCCAGATCGTTGACCTTCCCGGCTCAAACGACACCGTGTACCAACGCCTGAAGCGCTTCGTGCAATTCGCACTTCCTGATCTCCTGGT
TGCCCGCTTCGTCCTGGCCCATCTGCGAGACGAGCAGCATCTGCTGCTCGTCCTGGACCGCACCAATTGGAAGCTCGGTCAGCAGGACATCAATATTCTC
CTGCTCAGTGTGCGGTGGCAGACCTTCAGTTTCCCGCTCGTCTGGACCTTGTTGCCGCATAGCGGCAACAGCAACATGGCGACCCGCATCGCGCTGGTCG
AACGCCTGCTCCCATTGCTCCAGGGCAAGACACTCTTCCTGGCCGCTGACCGAGAGTTCGTCGGTGGGGAGTGGTTCGTGGCCTTGCGCCGCATGAGCCT
TTCTCCCGTGATCCGTTTGCGGGCTGACAGCATGGTCGAGGGGTCCCCAGTCTGGGTCAGATTCAAGAAACTCAAGCCGGGTGAAGTGCGGGTCTGGTAC
AAGCCCACTCACGTCTACGGCGTGACGCTGCGCGTTCTAGCGTGCCAGAACGTCCACGGCCAGACTCTCTTCCTGGCTTACCAAGGCCATGCTGAAAAAG
CCCTGAAACGTTACGCGCTGCGCTGGACAGCAGAAAACATGCATCAGGCGCTGAAATCCAGGGGCTTTTTTCTCGAAAGCACTCACCTGACTGATCCCAG
TCGGGTTTCCACGCTCCTGGCCGTGGTCGCACTGGCCTTTGTATGGTGCTGTTTAGTGGGAGAGTTTGAGCAGCAGCGTGACCCGTCACGCTGCCTCAGG
CACGGCTATCCCCCCAAAAGCCTCTTCAGACGTGGCCTGGATGCCCTTCGCGCCGTGCTGACCAAGCCCAACCGTGGGGCTGCACGCGCGTTTCCCGACT
TTCTCGCCACTTTTGACCCCTAGAGAG
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1059 bp | 352 aa | 65 | 1123 | + | No |
Chemistry : DDE
ORF sequence :
MKDTRSRPAQSSLTALLAEHFPLDPRRLTVLSALILAVIQARSVVLYQLVQIVDLPGSNDTVYQRLKRFVQFALPDLLVARFVLAHLRDEQHLLLVLDRT
NWKLGQQDINILLLSVRWQTFSFPLVWTLLPHSGNSNMATRIALVERLLPLLQGKTLFLAADREFVGGEWFVALRRMSLSPVIRLRADSMVEGSPVWVRF
KKLKPGEVRVWYKPTHVYGVTLRVLACQNVHGQTLFLAYQGHAEKALKRYALRWTAENMHQALKSRGFFLESTHLTDPSRVSTLLAVVALAFVWCCLVGE
FEQQRDPSRCLRHGYPPKSLFRRGLDALRAVLTKPNRGAARAFPDFLATFDP
NWKLGQQDINILLLSVRWQTFSFPLVWTLLPHSGNSNMATRIALVERLLPLLQGKTLFLAADREFVGGEWFVALRRMSLSPVIRLRADSMVEGSPVWVRF
KKLKPGEVRVWYKPTHVYGVTLRVLACQNVHGQTLFLAYQGHAEKALKRYALRWTAENMHQALKSRGFFLESTHLTDPSRVSTLLAVVALAFVWCCLVGE
FEQQRDPSRCLRHGYPPKSLFRRGLDALRAVLTKPNRGAARAFPDFLATFDP
Blast result :
Comments
ISDge9 is 53% aa similar to ISDra1.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Brettin,T., Bruce,D., Han,C., Tapia,R., Saunders,E., Gilna,P., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Daly,M.J., Fredrickson,J.K., Makarova,K.S., Gaidamakova,E.K., Zhai,M. and Richardson,P. US DOE Joint Genome Institute. (2006) Direct submission GenBank.