ISDge8
- Family IS982
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_008025 | ND | Deinococcus geothermalis | Deinococcus geothermalis DSM 11300 |
DNA section
IS Length : 907 bp
Ends
IR Length : 19
IRL : ACCGCGAATAGGGGTTGACAGAGCAGGGGGAGAAATGGCAAAGGGACGGT
IRR : ACCGCGAATAGGGGTTGACTCGGAGGCTGGGCTGTGATCAGGGGGAGAGG
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| AGATTCTTCATTGT | GAGCT | GTGAAAAATT | 5 |
DNA sequence
ACCGCGAATAGGGGTTGACAGAGCAGGGGGAGAAATGGCAAAGGGACGGTGCTCATGTGCCGTCCCGACCTCAGTTTACTCCCCATCCCGGAGGCGCTCC
AGCACCTCACGGTCTGGCTCACTCCGCAGATGCCTCCCAAGCTGATCCATCCGCACGAAAAAATCAGTGACGGCGAACTGGTCGCTGTTGCCCTGTTGCA
ACGCCTCTACAAAGCGCCGTATTTCAAGGGGTGGTGGAAGCTCAATCACTGTCCCCACTTCCCCTCCGAGGTGCAGGCCCGAACCCGTTTGGAACGCCTG
ACGCCTGTAATGGAGCGACTTGCAACCGAAGTCCAGGCACTGGACTTCGTCGCTGTGGACTCCGAACCGCTCCCGGTGTGCACCTTCAAACGCGCGCCCC
GCTGCAAGTTCAAAGGGGCACGACACGGCTTCAGTACTGCTGGCCCGGTCTATGGGTTCAAGCTGCATGCCTGGACCACCCTGAACGGCAAGATCGCTAA
GTATGAGATCCGGCCCGCCAACGAACACGACTTCACGGTCGGGTGCGTGATGAACCAGGATTGGCCCGCCTATGGGAGGAATGGCGTCCTCAGGGGCGTC
CGTTCAAGACGAACAGGGCCGAAGCAAATTGGGGACAAAGGCTACCAGTCGGGCACCTATCTGACGCCTCCCAAGAAGAATGCCAAGCGATCTGACCCTC
GGTGGAAAGAAGAATATGCGGCAGCTCGTAAGATCATCGAATCGGCGTTCTCCGTCCTGGTCGGCTCCGGGCTGCGCTGGGGGCAGGTCAAAACCCTGGT
TAGTCTCTGCCTTAAGGTCGCCCTCCTCGTCCTGGCGCACAACCTCAAGTTCCTTGACCTCTCCCCCTGATCACAGCCCAGCCTCCGAGTCAACCCCTAT
TCGCGGT
AGCACCTCACGGTCTGGCTCACTCCGCAGATGCCTCCCAAGCTGATCCATCCGCACGAAAAAATCAGTGACGGCGAACTGGTCGCTGTTGCCCTGTTGCA
ACGCCTCTACAAAGCGCCGTATTTCAAGGGGTGGTGGAAGCTCAATCACTGTCCCCACTTCCCCTCCGAGGTGCAGGCCCGAACCCGTTTGGAACGCCTG
ACGCCTGTAATGGAGCGACTTGCAACCGAAGTCCAGGCACTGGACTTCGTCGCTGTGGACTCCGAACCGCTCCCGGTGTGCACCTTCAAACGCGCGCCCC
GCTGCAAGTTCAAAGGGGCACGACACGGCTTCAGTACTGCTGGCCCGGTCTATGGGTTCAAGCTGCATGCCTGGACCACCCTGAACGGCAAGATCGCTAA
GTATGAGATCCGGCCCGCCAACGAACACGACTTCACGGTCGGGTGCGTGATGAACCAGGATTGGCCCGCCTATGGGAGGAATGGCGTCCTCAGGGGCGTC
CGTTCAAGACGAACAGGGCCGAAGCAAATTGGGGACAAAGGCTACCAGTCGGGCACCTATCTGACGCCTCCCAAGAAGAATGCCAAGCGATCTGACCCTC
GGTGGAAAGAAGAATATGCGGCAGCTCGTAAGATCATCGAATCGGCGTTCTCCGTCCTGGTCGGCTCCGGGCTGCGCTGGGGGCAGGTCAAAACCCTGGT
TAGTCTCTGCCTTAAGGTCGCCCTCCTCGTCCTGGCGCACAACCTCAAGTTCCTTGACCTCTCCCCCTGATCACAGCCCAGCCTCCGAGTCAACCCCTAT
TCGCGGT
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 816 bp | 271 aa | 55 | 870 | + | No |
Chemistry : DDE
ORF sequence :
MCRPDLSLLPIPEALQHLTVWLTPQMPPKLIHPHEKISDGELVAVALLQRLYKAPYFKGWWKLNHCPHFPSEVQARTRLERLTPVMERLATEVQALDFVA
VDSEPLPVCTFKRAPRCKFKGARHGFSTAGPVYGFKLHAWTTLNGKIAKYEIRPANEHDFTVGCVMNQDWPAYGRNGVLRGVRSRRTGPKQIGDKGYQSG
TYLTPPKKNAKRSDPRWKEEYAAARKIIESAFSVLVGSGLRWGQVKTLVSLCLKVALLVLAHNLKFLDLSP
VDSEPLPVCTFKRAPRCKFKGARHGFSTAGPVYGFKLHAWTTLNGKIAKYEIRPANEHDFTVGCVMNQDWPAYGRNGVLRGVRSRRTGPKQIGDKGYQSG
TYLTPPKKNAKRSDPRWKEEYAAARKIIESAFSVLVGSGLRWGQVKTLVSLCLKVALLVLAHNLKFLDLSP
Blast result :
Comments
ISDge8 is 43% aa similar to ISLpl4.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Brettin,T., Bruce,D., Han,C., Tapia,R., Saunders,E., Gilna,P., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Daly,M.J., Fredrickson,J.K., Makarova,K.S., Gaidamakova,E.K., Zhai,M. and Richardson,P. US DOE Joint Genome Institute. (2006) Direct submission GenBank.