ISDge5
- Family IS701
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_008025 | ND | Deinococcus geothermalis | Deinococcus geothermalis DSM 11300 Deinococcus geothermalis DSM 11300 plasmid 1 |
DNA section
IS Length : 1150 bp
Ends
IR Length : 15
IRL : TCAGGAGTTGCACCTGAATAGGTAGCGAAGAAGCGCTCCCAGACGCGAGA
IRR : TCAGGAGTTGCACCTTGCAATTTTGAGTGAATAGCCGTGCTGGCGCAGAA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TGACCGAGAACG | GCAAGAC | CGTGACTCGAGAGG | 7 |
DNA sequence
TCAGGAGTTGCACCTGAATAGGTAGCGAAGAAGCGCTCCCAGACGCGAGAATCTGGGGATGTCGAATTCGCAGATTCTGGGGGAGCGCGCCCGTATTCTG
GCAGATCAGCTCCTCGCTGTGCCCACCACCGTCTATCAGCAGCGCAGCTTGCAAGCTGCGCTGCACCTGTTCCTCGATACGGGGACCAAAACCGCCCTGC
ACCGTGCGCCGCTGGTCAGCAAGAGTGCGGTGAGCCGCTTGTTGAACAATTATGACTGGGATACAGCGGCCTGCTGGGCGTTGCTCCAGCGCAGCCAGTG
GGAGGCCCTGCTGCTCGCCGCACGACGCAAGCGTCGTGCCTGCCTCCGGTTGAGCGTGGACCTGACCAGCATCGAGAAGACGGGCAAGCAATTGCCCTTC
GTCCGCGTCTACAACGAAGTCCACGGCATTCATCTGGTCGTGCTGTTTGCCGAATACCGGGGGCTGAAATTCCCGGTGGGGTATCGGGTCTACCGGGGAA
AGGGCACAGCAACCCCCGTGTCGCTCGCCCTGGAATTGCTGGGGGAGGTGCCCGACGCCATTCGGAAGCGCTTTCGAATCCGTGTGCTGGCGGACAGCGG
CTTTGAAGCCGCTGTCTTCCTGGATGGGGTTCGTACCCTGGGCTTCGAGTTCGTCGTCGGCGTCCGAGCGACTCGGCGTACCACCCATCCCGGTCAAGTG
ACGGTGGCGGACTGCGAACATGGGGCCTGGCTGGAATTGCAGAACTGGCCGCATGACACCCTGACCCTCGCCCGAGTTGAGCGGGGAGAGCGGACCTTTT
TCTCGGTCGCCTCAGAGTTGATGACGGGAGACGAAGTGGCCGCCGAGGGGGGCAAGCGGTGGAACATCGAGTCCTTTTTCAAGGAGGGCAAGCACCAGTT
TAGTCTCCAGCAGTTCGCCTTGCGAACTGCCCGCGGCTTAGACCGCTGGGTGCTGCTGGTGTTTCTCGCCTTCACCTTAACGATGCTGCACCGCTCGCCT
GACCTCTCGCTTGAAGAGGCCGCAGGGCTGGCCTTGACCCTGGCCCTCCCTTTCCTCCGCTTGAACGTCATCTTCGCCCGCCTCGCCACAGACGAGGAAT
TTCTGCGCCAGCACGGCTATTCACTCAAAATTGCAAGGTGCAACTCCTGA
GCAGATCAGCTCCTCGCTGTGCCCACCACCGTCTATCAGCAGCGCAGCTTGCAAGCTGCGCTGCACCTGTTCCTCGATACGGGGACCAAAACCGCCCTGC
ACCGTGCGCCGCTGGTCAGCAAGAGTGCGGTGAGCCGCTTGTTGAACAATTATGACTGGGATACAGCGGCCTGCTGGGCGTTGCTCCAGCGCAGCCAGTG
GGAGGCCCTGCTGCTCGCCGCACGACGCAAGCGTCGTGCCTGCCTCCGGTTGAGCGTGGACCTGACCAGCATCGAGAAGACGGGCAAGCAATTGCCCTTC
GTCCGCGTCTACAACGAAGTCCACGGCATTCATCTGGTCGTGCTGTTTGCCGAATACCGGGGGCTGAAATTCCCGGTGGGGTATCGGGTCTACCGGGGAA
AGGGCACAGCAACCCCCGTGTCGCTCGCCCTGGAATTGCTGGGGGAGGTGCCCGACGCCATTCGGAAGCGCTTTCGAATCCGTGTGCTGGCGGACAGCGG
CTTTGAAGCCGCTGTCTTCCTGGATGGGGTTCGTACCCTGGGCTTCGAGTTCGTCGTCGGCGTCCGAGCGACTCGGCGTACCACCCATCCCGGTCAAGTG
ACGGTGGCGGACTGCGAACATGGGGCCTGGCTGGAATTGCAGAACTGGCCGCATGACACCCTGACCCTCGCCCGAGTTGAGCGGGGAGAGCGGACCTTTT
TCTCGGTCGCCTCAGAGTTGATGACGGGAGACGAAGTGGCCGCCGAGGGGGGCAAGCGGTGGAACATCGAGTCCTTTTTCAAGGAGGGCAAGCACCAGTT
TAGTCTCCAGCAGTTCGCCTTGCGAACTGCCCGCGGCTTAGACCGCTGGGTGCTGCTGGTGTTTCTCGCCTTCACCTTAACGATGCTGCACCGCTCGCCT
GACCTCTCGCTTGAAGAGGCCGCAGGGCTGGCCTTGACCCTGGCCCTCCCTTTCCTCCGCTTGAACGTCATCTTCGCCCGCCTCGCCACAGACGAGGAAT
TTCTGCGCCAGCACGGCTATTCACTCAAAATTGCAAGGTGCAACTCCTGA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1092 bp | 363 aa | 59 | 1150 | + | No |
Chemistry : DDE
ORF sequence :
MSNSQILGERARILADQLLAVPTTVYQQRSLQAALHLFLDTGTKTALHRAPLVSKSAVSRLLNNYDWDTAACWALLQRSQWEALLLAARRKRRACLRLSV
DLTSIEKTGKQLPFVRVYNEVHGIHLVVLFAEYRGLKFPVGYRVYRGKGTATPVSLALELLGEVPDAIRKRFRIRVLADSGFEAAVFLDGVRTLGFEFVV
GVRATRRTTHPGQVTVADCEHGAWLELQNWPHDTLTLARVERGERTFFSVASELMTGDEVAAEGGKRWNIESFFKEGKHQFSLQQFALRTARGLDRWVLL
VFLAFTLTMLHRSPDLSLEEAAGLALTLALPFLRLNVIFARLATDEEFLRQHGYSLKIARCNS
DLTSIEKTGKQLPFVRVYNEVHGIHLVVLFAEYRGLKFPVGYRVYRGKGTATPVSLALELLGEVPDAIRKRFRIRVLADSGFEAAVFLDGVRTLGFEFVV
GVRATRRTTHPGQVTVADCEHGAWLELQNWPHDTLTLARVERGERTFFSVASELMTGDEVAAEGGKRWNIESFFKEGKHQFSLQQFALRTARGLDRWVLL
VFLAFTLTMLHRSPDLSLEEAAGLALTLALPFLRLNVIFARLATDEEFLRQHGYSLKIARCNS
Blast result :
Comments
ISDge5 is 40% aa similar to ISNpu6.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Brettin,T., Bruce,D., Han,C., Tapia,R., Saunders,E., Gilna,P., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Daly,M.J., Fredrickson,J.K., Makarova,K.S., Gaidamakova,E.K., Zhai,M. and Richardson,P. US DOE Joint Genome Institute. (2006) Direct submission GenBank.