ISDge5

  • Family IS701
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_008025 ND Deinococcus geothermalis
Deinococcus geothermalis DSM 11300
Deinococcus geothermalis DSM 11300 plasmid 1
DNA section
IS Length : 1150 bp

Ends


IR Length : 15

IRL : TCAGGAGTTGCACCTGAATAGGTAGCGAAGAAGCGCTCCCAGACGCGAGA
IRR : TCAGGAGTTGCACCTTGCAATTTTGAGTGAATAGCCGTGCTGGCGCAGAA

Insertion site


Left flankDirect repeatRight flankDR Length
TGACCGAGAACGGCAAGACCGTGACTCGAGAGG7

DNA sequence

TCAGGAGTTGCACCTGAATAGGTAGCGAAGAAGCGCTCCCAGACGCGAGAATCTGGGGATGTCGAATTCGCAGATTCTGGGGGAGCGCGCCCGTATTCTG
GCAGATCAGCTCCTCGCTGTGCCCACCACCGTCTATCAGCAGCGCAGCTTGCAAGCTGCGCTGCACCTGTTCCTCGATACGGGGACCAAAACCGCCCTGC
ACCGTGCGCCGCTGGTCAGCAAGAGTGCGGTGAGCCGCTTGTTGAACAATTATGACTGGGATACAGCGGCCTGCTGGGCGTTGCTCCAGCGCAGCCAGTG
GGAGGCCCTGCTGCTCGCCGCACGACGCAAGCGTCGTGCCTGCCTCCGGTTGAGCGTGGACCTGACCAGCATCGAGAAGACGGGCAAGCAATTGCCCTTC
GTCCGCGTCTACAACGAAGTCCACGGCATTCATCTGGTCGTGCTGTTTGCCGAATACCGGGGGCTGAAATTCCCGGTGGGGTATCGGGTCTACCGGGGAA
AGGGCACAGCAACCCCCGTGTCGCTCGCCCTGGAATTGCTGGGGGAGGTGCCCGACGCCATTCGGAAGCGCTTTCGAATCCGTGTGCTGGCGGACAGCGG
CTTTGAAGCCGCTGTCTTCCTGGATGGGGTTCGTACCCTGGGCTTCGAGTTCGTCGTCGGCGTCCGAGCGACTCGGCGTACCACCCATCCCGGTCAAGTG
ACGGTGGCGGACTGCGAACATGGGGCCTGGCTGGAATTGCAGAACTGGCCGCATGACACCCTGACCCTCGCCCGAGTTGAGCGGGGAGAGCGGACCTTTT
TCTCGGTCGCCTCAGAGTTGATGACGGGAGACGAAGTGGCCGCCGAGGGGGGCAAGCGGTGGAACATCGAGTCCTTTTTCAAGGAGGGCAAGCACCAGTT
TAGTCTCCAGCAGTTCGCCTTGCGAACTGCCCGCGGCTTAGACCGCTGGGTGCTGCTGGTGTTTCTCGCCTTCACCTTAACGATGCTGCACCGCTCGCCT
GACCTCTCGCTTGAAGAGGCCGCAGGGCTGGCCTTGACCCTGGCCCTCCCTTTCCTCCGCTTGAACGTCATCTTCGCCCGCCTCGCCACAGACGAGGAAT
TTCTGCGCCAGCACGGCTATTCACTCAAAATTGCAAGGTGCAACTCCTGA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1092 bp363 aa591150+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSNSQILGERARILADQLLAVPTTVYQQRSLQAALHLFLDTGTKTALHRAPLVSKSAVSRLLNNYDWDTAACWALLQRSQWEALLLAARRKRRACLRLSV
DLTSIEKTGKQLPFVRVYNEVHGIHLVVLFAEYRGLKFPVGYRVYRGKGTATPVSLALELLGEVPDAIRKRFRIRVLADSGFEAAVFLDGVRTLGFEFVV
GVRATRRTTHPGQVTVADCEHGAWLELQNWPHDTLTLARVERGERTFFSVASELMTGDEVAAEGGKRWNIESFFKEGKHQFSLQQFALRTARGLDRWVLL
VFLAFTLTMLHRSPDLSLEEAAGLALTLALPFLRLNVIFARLATDEEFLRQHGYSLKIARCNS

 

Blast result :
Comments
ISDge5 is 40% aa similar to ISNpu6.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Brettin,T., Bruce,D., Han,C., Tapia,R., Saunders,E., Gilna,P., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Daly,M.J., Fredrickson,J.K., Makarova,K.S., Gaidamakova,E.K., Zhai,M. and Richardson,P. US DOE Joint Genome Institute. (2006) Direct submission GenBank.