ISLxx6
- Family IS5
- Group IS427
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_006087 | ND | Leifsonia xyli | Leifsonia xyli subsp. xyli CTCB07 |
DNA section
IS Length : 919 bp
Ends
IR Length : 20
IRL : GGGATGGTTTCAGTAGTTGGCGTGGTGGTGGTTGTTGTGGCTGGTTGGTG
IRR : GGGATGGTTTCAGTAGTTGGTTTTGGTGAGTTTGCGGGCGCTGGTGATCG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CCAGAACTAA | TTAGAGCGCG | 0 |
DNA sequence
GGGATGGTTTCAGTAGTTGGCGTGGTGGTGGTTGTTGTGGCTGGTTGGTGGGGATGCTGGTGGAGTGTCGGCGCTTGCCGAGGATCGGTTCATTAAGGAT
ACGTTGTGGGAGCGGTTGGAGTCGTTGATCCCGTCGCGGCCGCCGGCGGTCAATGGGCGGACGGGGCAGCCTCGGGTTCCGGACCGGAAGGTGTTCGCTG
GGATCGTGTTCGTGCTGTTGACAGGGATCCCGTGGAGGAAGCTTCCATCCGAGCTTGGGTACGGGTCTGGGATCACCTGCTGGCGGCGTCTGCGTGAATG
GTCCGAAGCGGGGGTGTGGGACGCACTGCGGAGGATCCTGCTCGATGAGCTCGGCCACGCAAAACGCTCGGCTGGGAAACCCCAGCCGAACGCCTCGCTA
AACTACTCGCCAGCTAATCGTCGTGTTGCAACAACCACTGGAATCCGCCCTGGACCTAACCCCACGGATCGCGGGAAACTCGGCACGAAGTACCATGTCC
TGACCGACCGCAACGGGATCCCGCTGCATGTCGAGATCTCCGGCGCGAACCGACATGACTCCATGCTCGTGCAACCCGTGTTGGACAACATCACCGCGAT
CAAGGGTGTCGGCCGCGGTCGGCCGAGACGCCGCCCGGTCATCTTCCACGCCGACAAGGCCTACGACAACCGACGCGTCCGCCGCTACCTGCGACGTCGT
GGCATCAAGACGCGCATCGCAAGAATCGGAGTCAACTCCAAACAGCGACTCGGCAAACACCGCTGGGTAGTCGAACACACCATGGCCTGGGTCCTCGACT
TCCGGAAACTCGCCACTAGCTACGACCGCACCGCCCCAACGATCACAACGCTCGTCGCTCTAGCAGTCGCGATCACCAGCGCCCGCAAACTCACCAAAAC
CAACTACTGAAACCATCCC
ACGTTGTGGGAGCGGTTGGAGTCGTTGATCCCGTCGCGGCCGCCGGCGGTCAATGGGCGGACGGGGCAGCCTCGGGTTCCGGACCGGAAGGTGTTCGCTG
GGATCGTGTTCGTGCTGTTGACAGGGATCCCGTGGAGGAAGCTTCCATCCGAGCTTGGGTACGGGTCTGGGATCACCTGCTGGCGGCGTCTGCGTGAATG
GTCCGAAGCGGGGGTGTGGGACGCACTGCGGAGGATCCTGCTCGATGAGCTCGGCCACGCAAAACGCTCGGCTGGGAAACCCCAGCCGAACGCCTCGCTA
AACTACTCGCCAGCTAATCGTCGTGTTGCAACAACCACTGGAATCCGCCCTGGACCTAACCCCACGGATCGCGGGAAACTCGGCACGAAGTACCATGTCC
TGACCGACCGCAACGGGATCCCGCTGCATGTCGAGATCTCCGGCGCGAACCGACATGACTCCATGCTCGTGCAACCCGTGTTGGACAACATCACCGCGAT
CAAGGGTGTCGGCCGCGGTCGGCCGAGACGCCGCCCGGTCATCTTCCACGCCGACAAGGCCTACGACAACCGACGCGTCCGCCGCTACCTGCGACGTCGT
GGCATCAAGACGCGCATCGCAAGAATCGGAGTCAACTCCAAACAGCGACTCGGCAAACACCGCTGGGTAGTCGAACACACCATGGCCTGGGTCCTCGACT
TCCGGAAACTCGCCACTAGCTACGACCGCACCGCCCCAACGATCACAACGCTCGTCGCTCTAGCAGTCGCGATCACCAGCGCCCGCAAACTCACCAAAAC
CAACTACTGAAACCATCCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
879 bp | 292 aa | 32 | 910 | + | No |
Chemistry : DDE
ORF sequence :
MLWLVGGDAGGVSALAEDRFIKDTLWERLESLIPSRPPAVNGRTGQPRVPDRKVFAGIVFVLLTGIPWRKLPSELGYGSGITCWRRLREWSEAGVWDALR
RILLDELGHAKRSAGKPQPNASLNYSPANRRVATTTGIRPGPNPTDRGKLGTKYHVLTDRNGIPLHVEISGANRHDSMLVQPVLDNITAIKGVGRGRPRR
RPVIFHADKAYDNRRVRRYLRRRGIKTRIARIGVNSKQRLGKHRWVVEHTMAWVLDFRKLATSYDRTAPTITTLVALAVAITSARKLTKTNY
RILLDELGHAKRSAGKPQPNASLNYSPANRRVATTTGIRPGPNPTDRGKLGTKYHVLTDRNGIPLHVEISGANRHDSMLVQPVLDNITAIKGVGRGRPRR
RPVIFHADKAYDNRRVRRYLRRRGIKTRIARIGVNSKQRLGKHRWVVEHTMAWVLDFRKLATSYDRTAPTITTLVALAVAITSARKLTKTNY
Blast result :
Comments
No DR was identified, however the first three nucleotides (TTA) flanking the 3'IR of ISLxx6 is the same sequence of the DR described for IS1237. It is possible that TTA was the target site for ISLxx6 insertion and a mutation has changed T for A in the TAA sequence flanking the 5'IR of ISLxx6. ISLxx6 is 78% aa similar to IS1237 (from Leifsonia xyli subsp. cynodontis).
References