ISDge4
- Family IS66
- Group ISBst12
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_008025 | ND | Deinococcus geothermalis | Deinococcus geothermalis DSM 11300 Deinococcus geothermalis DSM 11300 plasmid pDGEO01 |
DNA section
IS Length : 1453 bp
Ends
IR Length : 18/25
IRL : GTGACTACTCAGCAGGGGGAGTTGATGTCTGCGGCAAGGTAGAGTAGGGC
IRR : GTAACTGCTCAGCACGAGAAATCGAGTTTGGGTAGGACACCGCGAAAAAC
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| GGTTAAGGGA | AAGGGATG | AGGGTTTGAG | 8 |
| TACATTGAAA | TACACAGA | TACCTGAGTC | 8 |
| ACAGCCAATA | GGGTAACG | AGTCTCTAGG | 8 |
| GTTTAATGTT | TAATATTG | AAGAGATCGC | 8 |
| GCACCACTTC | GAAGAAAA | AGCGTTCATC | 8 |
| GCGCCCTGCT | GCCCAATC | TTCTGCTGGG | 8 |
DNA sequence
GTGACTACTCAGCAGGGGGAGTTGATGTCTGCGGCAAGGTAGAGTAGGGCATCACACAGGACGCCTGCCCGAACTGCCAACGACTGGAAGCTGAACTTGT
GCAGCTTCGTCAGGAACTTGAGCGTCTGAAGGCAGAGCTACGCGAACTGAAATCCCGTCTGAAACGCGATAGTGAGACTTCAAATCAGCCACCGAGCAAA
GACCCGCCCTGGAAGCCCAAAAGTGAGCGGCAGAAGAGCGAACGCTCTTCTGGTGGTCAGCGTGGTCATCCGGGGAAAACCCTGAAATTCAGTGACGAAC
CCGATGACATCCAGCCCCTCCCGCTCACGGGTCAATGCGGGTGTGGACAAGCGTGGGACGAGGTGAAGGCGACTGAACATCTGGCCCGGCAGGTTCACGA
CCTGCCGGAACTGCGCCTGCACATCACTGAATTTCAGGCTGAAGTCAAAATCTGTCCCAGGTGTGGTTGCCGGGGACAGGCGGCTTTTCCTGAGCATGTT
CCTGGACAGGTGCAATACGGGCCGCGCCTGCACGCCCTGACGACATATTTGAATGTGGTGCATTTCGTACCACTGCAACGGGTAACTCAGATCACGGACG
CGCTTTTTGGCGCGTCCATCAGCGATGGCACCGTGGCTCTGAACATCAATCTGGCCTCAGAGCGCCTCAAACCGTTTGAGGACGACCTGAAGGCTGGACT
CAGGCAGCAACCCGTGCTGCACGCAGATGAAACGGGCGCAAAGGTGAATGGCAAATTGAACTGGTTCCATGTCGCGTGCTTTGCTGGTGGGACGCTCTAC
ACGCTGCATCCGCAACGAGGCTATGCCGCGATCAAAGCCGCCGGTGTCCTGTCTGACTTTGGGGGCGTCGTGGTTCACGACGCTTGGAACACCTATTTCC
GTCTGCCAGGGGAACATGCGCTGTGCAATGCTCACCTGTTGCGGGAGTTACGCAAACTGGATGAGCATGACGGGCAACCCTGGGCCGGTGAACTGCGACG
CGAACTCCAGCAGGTCTACCACTTGCAAAAATCAGGAGGAATCACCGAACAGCAGAAAATGGCCTTCTATACACGCTTTGACGAACTGGTGCAGGCTGCT
CTGGAAGCCAACCCAGTGCAGGAACCCATTCCAAAACAGCGTGGAAAACCCAAACAACTTCCAGGGAGGAACCTAGCCTTGCGGTGCCAGCAGCATCGCG
CCGCGATGCTGCGCTTTCTGGAACGTGATGATGTGCCCTTTGATAACAACCAGGCCGAGCGTGACATCAGGATGCTATGCGTGAAACGCAAGGTTTCAGG
TGGGTTCCGCTCTGAGGCGGGTGGCGAGGCGTTCTGTCGCATTCGGAGTTTCGTGTCAACCCTTCACAAGCAGGGTCTATCCGTTTGGGACGGTTTAGTG
GATGTTTTTCGCGGTGTCCTACCCAAACTCGATTTCTCGTGCTGAGCAGTTAC
GCAGCTTCGTCAGGAACTTGAGCGTCTGAAGGCAGAGCTACGCGAACTGAAATCCCGTCTGAAACGCGATAGTGAGACTTCAAATCAGCCACCGAGCAAA
GACCCGCCCTGGAAGCCCAAAAGTGAGCGGCAGAAGAGCGAACGCTCTTCTGGTGGTCAGCGTGGTCATCCGGGGAAAACCCTGAAATTCAGTGACGAAC
CCGATGACATCCAGCCCCTCCCGCTCACGGGTCAATGCGGGTGTGGACAAGCGTGGGACGAGGTGAAGGCGACTGAACATCTGGCCCGGCAGGTTCACGA
CCTGCCGGAACTGCGCCTGCACATCACTGAATTTCAGGCTGAAGTCAAAATCTGTCCCAGGTGTGGTTGCCGGGGACAGGCGGCTTTTCCTGAGCATGTT
CCTGGACAGGTGCAATACGGGCCGCGCCTGCACGCCCTGACGACATATTTGAATGTGGTGCATTTCGTACCACTGCAACGGGTAACTCAGATCACGGACG
CGCTTTTTGGCGCGTCCATCAGCGATGGCACCGTGGCTCTGAACATCAATCTGGCCTCAGAGCGCCTCAAACCGTTTGAGGACGACCTGAAGGCTGGACT
CAGGCAGCAACCCGTGCTGCACGCAGATGAAACGGGCGCAAAGGTGAATGGCAAATTGAACTGGTTCCATGTCGCGTGCTTTGCTGGTGGGACGCTCTAC
ACGCTGCATCCGCAACGAGGCTATGCCGCGATCAAAGCCGCCGGTGTCCTGTCTGACTTTGGGGGCGTCGTGGTTCACGACGCTTGGAACACCTATTTCC
GTCTGCCAGGGGAACATGCGCTGTGCAATGCTCACCTGTTGCGGGAGTTACGCAAACTGGATGAGCATGACGGGCAACCCTGGGCCGGTGAACTGCGACG
CGAACTCCAGCAGGTCTACCACTTGCAAAAATCAGGAGGAATCACCGAACAGCAGAAAATGGCCTTCTATACACGCTTTGACGAACTGGTGCAGGCTGCT
CTGGAAGCCAACCCAGTGCAGGAACCCATTCCAAAACAGCGTGGAAAACCCAAACAACTTCCAGGGAGGAACCTAGCCTTGCGGTGCCAGCAGCATCGCG
CCGCGATGCTGCGCTTTCTGGAACGTGATGATGTGCCCTTTGATAACAACCAGGCCGAGCGTGACATCAGGATGCTATGCGTGAAACGCAAGGTTTCAGG
TGGGTTCCGCTCTGAGGCGGGTGGCGAGGCGTTCTGTCGCATTCGGAGTTTCGTGTCAACCCTTCACAAGCAGGGTCTATCCGTTTGGGACGGTTTAGTG
GATGTTTTTCGCGGTGTCCTACCCAAACTCGATTTCTCGTGCTGAGCAGTTAC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1347 bp | 448 aa | 99 | 1445 | + | No |
Chemistry : DDE
ORF sequence :
MQLRQELERLKAELRELKSRLKRDSETSNQPPSKDPPWKPKSERQKSERSSGGQRGHPGKTLKFSDEPDDIQPLPLTGQCGCGQAWDEVKATEHLARQVH
DLPELRLHITEFQAEVKICPRCGCRGQAAFPEHVPGQVQYGPRLHALTTYLNVVHFVPLQRVTQITDALFGASISDGTVALNINLASERLKPFEDDLKAG
LRQQPVLHADETGAKVNGKLNWFHVACFAGGTLYTLHPQRGYAAIKAAGVLSDFGGVVVHDAWNTYFRLPGEHALCNAHLLRELRKLDEHDGQPWAGELR
RELQQVYHLQKSGGITEQQKMAFYTRFDELVQAALEANPVQEPIPKQRGKPKQLPGRNLALRCQQHRAAMLRFLERDDVPFDNNQAERDIRMLCVKRKVS
GGFRSEAGGEAFCRIRSFVSTLHKQGLSVWDGLVDVFRGVLPKLDFSC
DLPELRLHITEFQAEVKICPRCGCRGQAAFPEHVPGQVQYGPRLHALTTYLNVVHFVPLQRVTQITDALFGASISDGTVALNINLASERLKPFEDDLKAG
LRQQPVLHADETGAKVNGKLNWFHVACFAGGTLYTLHPQRGYAAIKAAGVLSDFGGVVVHDAWNTYFRLPGEHALCNAHLLRELRKLDEHDGQPWAGELR
RELQQVYHLQKSGGITEQQKMAFYTRFDELVQAALEANPVQEPIPKQRGKPKQLPGRNLALRCQQHRAAMLRFLERDDVPFDNNQAERDIRMLCVKRKVS
GGFRSEAGGEAFCRIRSFVSTLHKQGLSVWDGLVDVFRGVLPKLDFSC
Blast result :
Comments
ISDge4 is 89% aa similar to ISDra8.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Brettin,T., Bruce,D., Han,C., Tapia,R., Saunders,E., Gilna,P., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Daly,M.J., Fredrickson,J.K., Makarova,K.S., Gaidamakova,E.K., Zhai,M. and Richardson,P. US DOE Joint Genome Institute. (2006) Direct submission GenBank.