ISPaac1

  • Family IS256
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_015702 ND Parachlamydia acanthamoebae
Parachlamydia acanthamoebae UV-7
DNA section
IS Length : 1397 bp

Ends


IR Length : 18/21

IRL : GAGATATGATCAAAAGTTGTGCATGAGGTGAAAAAAAGAGAGCGCATCCT
IRR : GAGATATTGTCAAATGTTGTGTTTTGAGCATCTAATAGCGCATCCAATTT

Insertion site


Left flankDirect repeatRight flankDR Length
ATACCCTTTATTGTTACGTGA0
TAATCGACCTGTTAAAGCTCCTAGCATATTG9
CCAAATCCCCTGTATAGCCAT0
TTTTTAGGCTCAATAGATAAT0

DNA sequence

GAGATATGATCAAAAGTTGTGCATGAGGTGAAAAAAAGAGAGCGCATCCTTAAAATGTTTTTTACGACAAAAACTAAATGGGAGTGCGCTCATGGAAGAT
TTTCGCTTTTCTTCAGAAAAAATGCCATCAACAAATGAACAAAATAATCCTCTCGAAGAAATTCTTCGTAAAGGGGCTCAAAAATTGTTACAGCAAGCTA
TTGAATTTGAAGTACAAGAATATCTGGAACTTTACAAACAATCGAAAGAATCTACCCATCAATCTCCTGCAGTAAGAAATGGTTACTTACCAGAAAAAAA
CATTCAAACCGGTCTTGGCCCAATTGCAATTCGCCAGCCTAGAATAAGACATAGAGACAATGGCAAGTTCACAAGTGCGATTTTGCCACCTTATTTGAGA
AGGACACAAAGTATAGATGCGGTTATTCCTGCTTTGTATCTTAAAGGAATATCCACCCTGGATTTTCCGAAAGCTCTAGAGGCAATTTTGGGAGAAAATG
CTAAAGGACTATCACCCACAAATATCGTTAGATTGAAAGATTCATGGACAACAGAATATCAAAATTGGCTCAAAAGTGATTTATCCGCAAAAAAGTATGT
TTATATATGGGCGGATGGGATTTATTTTAACATTCGTTTAGAAGAAGATCGACCCTGCGTTCTGGTTCTGATAGGTGCTTTAGAGAATGGAAATAAAGAA
CTTATCATGATCCATGATGGGCACCGAGAAAGCAAGCAGTCTTGGAAAGAAGTTTTGCAAAATTTAAAACATCGAGGTCTCAAAGAAGGACCAAAGCTTG
CTATTGGAGATGGAGCACTTGGCTTTTGGGCAGCTTTAAATGAAGAGTTTCCAGCAACAAAGCAGCAAAGGTGTTGGGTGCATAAAACGGCTAATATTTT
AGATAAAATGCCAAAAAGTATTCAAAAGTATGCCAAAGAGATCATTCACGAAATTTATATGGCTCCAAGAAAAACGGATGGACTAAAAGCTTTTGAGAAG
TTTCTTGGAACATATGAATCAAAATATCCAAAGGCCTGTGAATGTTTGAAAAAAGACAAAGATCAATTATTTAGCTTTTATGATTTTCCAGGCATGCATT
GGCAACATATAAGAACAACGAATCCAATCGAATCAACATTTGCAACTATTAGGCACCGCACACGACAAACCAAAGGCTGTGGGTCCAGAACAGCCACACT
TGCCATGGTTTACAAGCTTTCAATGGAAGCGCAAAAGCGATGGCGAAAATTAAAAGGTCATGAGTTGATTAACAAACTGATTTTGGGTGTGCAGTTTAAA
GATGGGGAAGAAGTCTTTAACATGAAATACACAGCTTAATTTTTAAAAAATTGGATGCGCTATTAGATGCTCAAAACACAACATTTGACAATATCTC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1248 bp415 aa921339+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MEDFRFSSEKMPSTNEQNNPLEEILRKGAQKLLQQAIEFEVQEYLELYKQSKESTHQSPAVRNGYLPEKNIQTGLGPIAIRQPRIRHRDNGKFTSAILPP
YLRRTQSIDAVIPALYLKGISTLDFPKALEAILGENAKGLSPTNIVRLKDSWTTEYQNWLKSDLSAKKYVYIWADGIYFNIRLEEDRPCVLVLIGALENG
NKELIMIHDGHRESKQSWKEVLQNLKHRGLKEGPKLAIGDGALGFWAALNEEFPATKQQRCWVHKTANILDKMPKSIQKYAKEIIHEIYMAPRKTDGLKA
FEKFLGTYESKYPKACECLKKDKDQLFSFYDFPGMHWQHIRTTNPIESTFATIRHRTRQTKGCGSRTATLAMVYKLSMEAQKRWRKLKGHELINKLILGV
QFKDGEEVFNMKYTA

 

Blast result :
Comments
ISPaac1 is 70% aa similar to ISMdi13.
References