ISLxc2

  • Family IS481
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
EF176596 ND Leifsonia xyli
Leifsonia xyli subsp. cynodontis
DNA section
IS Length : 1113 bp

Ends


IR Length : 20/22

IRL : TGTGCTGCCCAGGGACGTTGGTTGAGGTGTGACGCGATAGATGGGTGAGG
IRR : TGTGCTTCTCAGGGACGTTGGTCAATCTGCTGATGGGTGGCTGGCTGCCG

Insertion site


Left flankDirect repeatRight flankDR Length
CCTAGGCCACGG0

DNA sequence

TGTGCTGCCCAGGGACGTTGGTTGAGGTGTGACGCGATAGATGGGTGAGGACCTCCCGGTCGAGAGTGGGGCTGTCTAGTTCCCTGCACTCGATGACTTA
GGAGGTCCTCGTGACCCACGCTAATGCTGCTTTGACTCCTCGCGAATGCCTCCGCCTGGCCCGCCAAGTCGTCGACGACGGCTGGTCCGTTGCTGCGGCG
GCGACCTACTTCCGAGTGTCCTGACGCACCGCGGACCGATGGGCTCGTCGTTACGTGGAGATGGGCGAGGCGGGAATGCTGGACCGTTCGTCACGGCCGC
ATCACAGCCCGAACAAGACCCCGCGAAGACTGGTCCGCAAGGTCGTGCATCTGCGGTGGAAGAAGCGGCTGGGACCAGTCGGTATCGGCGCCCAGCTCGG
CATGCCCGCCTCGACCGTTCACACGGTCCTCTCCCGGTGCCGGATCAATCGGCCCAGCCACGTCGACGTCCGCACCGGCGAACCCGCCCGCCGCTACGAG
CACGAGCATCCCGGATCGATGATCCACGTCGACATCAAGAAACTCGGCAACATCCCCGACGGTGGCGGCTGGCGCTACATCGGACGTCTCCAGGGAGAGC
GGAACAAGGTCATCACCGCGAAGCGGACCGGGAAACACGGGATCACCGGCGACATGATCACCGGCACAGCGTTCGTTCATACCGTCATCGACGATCACTC
CCGTGTCGCTTACGCCGAGATCCACGACGACGAAACCGCCGCCACTGCAATCGCTGTTCTGCGTCGAGCGGTCGGCTGGTTCGCCAGCCGTGGCGTCACC
GTCGAACAGGGTGCTCTCCGACAACGGCTCCGCATACCGCTCATACACCTGGGCGCGACGCTTGCGCCGAGCTCAGCATCCAAACGGAAAACGCACCCCG
GCCCTACCATCCGCAAACGAACGGGCAAAGATCGAACGCTTCCACCGGCACCCTCGCCCGACGGCTGGGCATACGCCCGGCACTACAACTCCGAATCAGC
CCGCTGCAACGCACTCCCGGCCTGGCTGCACTCCTACAATCACCACAGGCCCCACACCGCCATCGGCAGCCAGCCACCCATCAGCAGATTGACCAACGTC
CCTGAGAAGCACA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1005 bp334 aa1111115+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

 

Blast result :
Comments
ISLxc2 is 67% aa similar to ISMysp5. There are a STOP codon in frame, the transposase is probably non functionnal.
References
1] Lin,H., Li,T.Y., Xie,M.H. and Zhang,Y.(2007) J. Bacteriol. 189 (8), 3217-3227