ISLxc2
- Family IS481
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
EF176596 | ND | Leifsonia xyli | Leifsonia xyli subsp. cynodontis |
DNA section
IS Length : 1113 bp
Ends
IR Length : 20/22
IRL : TGTGCTGCCCAGGGACGTTGGTTGAGGTGTGACGCGATAGATGGGTGAGG
IRR : TGTGCTTCTCAGGGACGTTGGTCAATCTGCTGATGGGTGGCTGGCTGCCG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CCTAGG | CCACGG | 0 |
DNA sequence
TGTGCTGCCCAGGGACGTTGGTTGAGGTGTGACGCGATAGATGGGTGAGGACCTCCCGGTCGAGAGTGGGGCTGTCTAGTTCCCTGCACTCGATGACTTA
GGAGGTCCTCGTGACCCACGCTAATGCTGCTTTGACTCCTCGCGAATGCCTCCGCCTGGCCCGCCAAGTCGTCGACGACGGCTGGTCCGTTGCTGCGGCG
GCGACCTACTTCCGAGTGTCCTGACGCACCGCGGACCGATGGGCTCGTCGTTACGTGGAGATGGGCGAGGCGGGAATGCTGGACCGTTCGTCACGGCCGC
ATCACAGCCCGAACAAGACCCCGCGAAGACTGGTCCGCAAGGTCGTGCATCTGCGGTGGAAGAAGCGGCTGGGACCAGTCGGTATCGGCGCCCAGCTCGG
CATGCCCGCCTCGACCGTTCACACGGTCCTCTCCCGGTGCCGGATCAATCGGCCCAGCCACGTCGACGTCCGCACCGGCGAACCCGCCCGCCGCTACGAG
CACGAGCATCCCGGATCGATGATCCACGTCGACATCAAGAAACTCGGCAACATCCCCGACGGTGGCGGCTGGCGCTACATCGGACGTCTCCAGGGAGAGC
GGAACAAGGTCATCACCGCGAAGCGGACCGGGAAACACGGGATCACCGGCGACATGATCACCGGCACAGCGTTCGTTCATACCGTCATCGACGATCACTC
CCGTGTCGCTTACGCCGAGATCCACGACGACGAAACCGCCGCCACTGCAATCGCTGTTCTGCGTCGAGCGGTCGGCTGGTTCGCCAGCCGTGGCGTCACC
GTCGAACAGGGTGCTCTCCGACAACGGCTCCGCATACCGCTCATACACCTGGGCGCGACGCTTGCGCCGAGCTCAGCATCCAAACGGAAAACGCACCCCG
GCCCTACCATCCGCAAACGAACGGGCAAAGATCGAACGCTTCCACCGGCACCCTCGCCCGACGGCTGGGCATACGCCCGGCACTACAACTCCGAATCAGC
CCGCTGCAACGCACTCCCGGCCTGGCTGCACTCCTACAATCACCACAGGCCCCACACCGCCATCGGCAGCCAGCCACCCATCAGCAGATTGACCAACGTC
CCTGAGAAGCACA
GGAGGTCCTCGTGACCCACGCTAATGCTGCTTTGACTCCTCGCGAATGCCTCCGCCTGGCCCGCCAAGTCGTCGACGACGGCTGGTCCGTTGCTGCGGCG
GCGACCTACTTCCGAGTGTCCTGACGCACCGCGGACCGATGGGCTCGTCGTTACGTGGAGATGGGCGAGGCGGGAATGCTGGACCGTTCGTCACGGCCGC
ATCACAGCCCGAACAAGACCCCGCGAAGACTGGTCCGCAAGGTCGTGCATCTGCGGTGGAAGAAGCGGCTGGGACCAGTCGGTATCGGCGCCCAGCTCGG
CATGCCCGCCTCGACCGTTCACACGGTCCTCTCCCGGTGCCGGATCAATCGGCCCAGCCACGTCGACGTCCGCACCGGCGAACCCGCCCGCCGCTACGAG
CACGAGCATCCCGGATCGATGATCCACGTCGACATCAAGAAACTCGGCAACATCCCCGACGGTGGCGGCTGGCGCTACATCGGACGTCTCCAGGGAGAGC
GGAACAAGGTCATCACCGCGAAGCGGACCGGGAAACACGGGATCACCGGCGACATGATCACCGGCACAGCGTTCGTTCATACCGTCATCGACGATCACTC
CCGTGTCGCTTACGCCGAGATCCACGACGACGAAACCGCCGCCACTGCAATCGCTGTTCTGCGTCGAGCGGTCGGCTGGTTCGCCAGCCGTGGCGTCACC
GTCGAACAGGGTGCTCTCCGACAACGGCTCCGCATACCGCTCATACACCTGGGCGCGACGCTTGCGCCGAGCTCAGCATCCAAACGGAAAACGCACCCCG
GCCCTACCATCCGCAAACGAACGGGCAAAGATCGAACGCTTCCACCGGCACCCTCGCCCGACGGCTGGGCATACGCCCGGCACTACAACTCCGAATCAGC
CCGCTGCAACGCACTCCCGGCCTGGCTGCACTCCTACAATCACCACAGGCCCCACACCGCCATCGGCAGCCAGCCACCCATCAGCAGATTGACCAACGTC
CCTGAGAAGCACA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1005 bp | 334 aa | 111 | 1115 | + | No |
Chemistry : DDE
ORF sequence :
Blast result :
Comments
ISLxc2 is 67% aa similar to ISMysp5. There are a STOP codon in frame, the transposase is probably non functionnal.
References
1] Lin,H., Li,T.Y., Xie,M.H. and Zhang,Y.(2007) J. Bacteriol. 189 (8), 3217-3227