ISMsm8

  • Family IS30
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_008596 ND Mycobacterium smegmatis
Mycobacterium smegmatis MC2 155
DNA section
IS Length : 1457 bp

Ends


IR Length : 29

IRL : GGGCGGATTCAACTGATCGTCGCAACACCTCGATTATGGAGGTGTGGAAT
IRR : GGGCGGATTCAACTGATCGTCGCAACACCGGCTTGATGAAGTGAGTGTAG

Insertion site


Left flankDirect repeatRight flankDR Length
GACGTGAACTTGCGATCCGG0
GCGGTGTATTTGCGAGCCCG0

DNA sequence

GGGCGGATTCAACTGATCGTCGCAACACCTCGATTATGGAGGTGTGGAATGGGTGTGTTGGATCGGCAGCGGGCGGTTCGGTTGTATCGGGGACAGATTC
CGTCTCCGGGTCGGCCGTCGGTGGCGTGGCGTCAGGATCGGGTGAGGTTCTGGGCGGCGATCGCTGCGGGGGCTATGACTGAGGACGCCGCTGCCGAAGC
GGGCGTGTCGTCGCCGGTTGGGTTCCGCTGGTTCCGTCACGCTGGTGGAGTGAATCCATGCTTGCCAGAAACAGTTTCGGGACGTTACCTGTCCTCGGAT
GAACGTGAGAACATCGCGTTGTGGCGCGCCCAGGGCGCCGGGGTGCGTGAGATCGCCCGGCGGCTCAAGCGTGCACCGTCGACCATCTCACGGGAGTTGC
GCCGCAATGCCTCGACCCGCACCTATCGACTCGACTATAAGGCCTCCACTGCGCAGTGGCACGCCGAGCGGCGCGCCCGCCGCCCCAAGACCGCCAAGCT
CGTTAGCAACGACCGGCTGCGTCAGTACGTCCAGGACAAACTGTCCGGCGTCGTTCGCGGCGCTGATGGCCAGGTCATCGTCGGTCCCGCCGCCGCCCCG
TGGAAGGGACGCAACAAGCCGCACCGGGGTGATCGGGCCTGGGTGCAGGCATGGAGTCCAGAACAGATCGCTCGACGGCTCCCGCTGGACTTCCCCGATG
ATGTGACTATGCGGATCAGCCACGAGGCCATCTATCAAGCGCTGTACGTCGAATCTCGCGGTGCGCTGAAGCGGGATCTGGTCAGCTGCCTGCGCCGAGG
CCGGGCACTGCGGGTACCGCGGGCACGAACGCGGTCCAAGGCGTGGGCCCATGTCACCCCTGAGACGTTGATCAGCCAACGCCCACCCGAGGTCGATGAT
CGCGCTGTTCCCGGACATTGGGAGGGTGATCTCCTGATTGGCTTGCAGCGCAGTGCAATCGGCACGCTGGTCGAGCGCAGCAGCCGGTTCACCATGCTGG
TCCATCTGCCACGTGAAGTTGGTTACGGGATAATTCCGCGGACCAAGAACGGGCCGGCGTTGGCCGGCTATGGCGCCATCACGATGGCCAACGCTCTGGA
ACAGACGATCACCACGTTGCCCGCGCAACTGCGTCGGTCGTTGACCTGGGACCGGGGCAAGGAACTGTCGGCGCACGCCCAGTTCTCGGTCGCCTCCGGA
GTCAAGGTGTTCTTCGCTGATCCGAAGAGTCCGTGGCAGCGCGGTACCAATGAGAACACCAATGGCCTGTTACGCCAATACTTTCCAAAAGGGACCGACC
TCTCAAGATGGTCGGCCGAGGACGTGGCAGCGATCGCCCATACCCTCAACACCAGGCCGCGGAAAACCCTCGGCTGGCGCACTCCCGCGGAAGCCTTCGC
CGAACACCTACACTCACTTCATCAAGCCGGTGTTGCGACGATCAGTTGAATCCGCCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1401 bp466 aa491449+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MGVLDRQRAVRLYRGQIPSPGRPSVAWRQDRVRFWAAIAAGAMTEDAAAEAGVSSPVGFRWFRHAGGVNPCLPETVSGRYLSSDERENIALWRAQGAGVR
EIARRLKRAPSTISRELRRNASTRTYRLDYKASTAQWHAERRARRPKTAKLVSNDRLRQYVQDKLSGVVRGADGQVIVGPAAAPWKGRNKPHRGDRAWVQ
AWSPEQIARRLPLDFPDDVTMRISHEAIYQALYVESRGALKRDLVSCLRRGRALRVPRARTRSKAWAHVTPETLISQRPPEVDDRAVPGHWEGDLLIGLQ
RSAIGTLVERSSRFTMLVHLPREVGYGIIPRTKNGPALAGYGAITMANALEQTITTLPAQLRRSLTWDRGKELSAHAQFSVASGVKVFFADPKSPWQRGT
NENTNGLLRQYFPKGTDLSRWSAEDVAAIAHTLNTRPRKTLGWRTPAEAFAEHLHSLHQAGVATIS

 

Blast result :
Comments
ISMsm8 is 59% aa similar to ISLxx5.
References
1] Fleischmann,R.D., Dodson,R.J., Haft,D.H., Merkel,J.S., Nelson,W.C. and Fraser,C.M. (2006) Direct Submission GenBank.