ISMsm5

  • Family IS630
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_008596 ND Mycobacterium smegmatis
Mycobacterium smegmatis MC2 155
DNA section
IS Length : 1103 bp

Ends


IR Length : 32/38

IRL : GTGTCGCGCGTCATTAATTAGTTTACAGTGTGGGATGATGGTGTATGCCG
IRR : GTGTCGCGCGTCTGAAGTTTGTTTACGAGTGTGGGGCAGGATTTCGTCGG

Insertion site


Left flankDirect repeatRight flankDR Length
TCGCTGCAGCTAGGCGGCATCT2
CAAGCCGATCTAGAAGCTCCCG2
CAAGCGCAGCTAGCGTTCTGCG2
CCCGAGCGCCTAGATGGGCTAA2
CGGCGGGCGCTAGCTTGACCTG2

DNA sequence

GTGTCGCGCGTCATTAATTAGTTTACAGTGTGGGATGATGGTGTATGCCGTCATCCACATTGGTGATCAGTTCTGAAGATCGTGTGACGTTGGAGTCGTG
GACGCGGTCCTCGACGGTGCCTGCCGGCCGTGTTGAGCGGGCGCGGATCGTGCTGGCGGTGGCCGACGGTGCGGGGACCTCGGGTGCGGCGCGGCAGGTG
GGGGTGTCGCGGCCGACGGTGATCAAGTGGCGGGATCGGTTCGCCGCGTTCGGCATTGAGGGGCTTGATGACGAACCACGCAGCGGCCGACCCAAGACGG
TCGATGACGCCGAGATCCTGGCGACCACGCTCGAGCCGCCACCGGAATCGTTGGCCGTGACCCACTGGTCGAGTCGACTGCTCGGAAAGCACCTCGGGAT
CGGGGATGCCACGGTGGCCCGGGCGTGGCGACGCTACGGGGTCAAACCGTGGCGGCGCGAGACGTTCAAGTTCTCCACCGACCCTGAACTGGAGGCCAAG
GTCCGTGACGTGATCGGCCTGTATCTGAACCCACCAGAAAAGGCGGTCGTGTTGTGCGTGGACGAAAAGAGCCAGATTCAGGCACTCAACCGCACCCAGC
CGATTTTGCCGTTGCGTCCGGGACTGCCGGAGAAGGCGACCCACGACTATCAGCGCAACGGCACCGCCACGTTGTTCGCCGCCTTGGAAATCGCAACCGG
CAAAGTGACCGACCGCTGCTACGAGCGGCACGGCAAAGCCGAGTTCCTCGATTTCCTCAAGACGGTCGCCCGGGCCTACCCGCGCCGCAAACTGCATGTG
GTGTGCGACAACTACCACACCCACAAACACGCTGACATCAATGCGTGGTTGGTCAAGAATCCCCGCGTGACACTGCATTTCACCCCGACCTCAGGCTCCT
GGTTGAACCTGGTCGAGGTGTTCTTCTCGATCATCACCCGCCAAGCAATCCGCCGGGGCTCGTTCAACAGCGTTAAAGAACTCATCGCTGCCATCAGCGC
CTTCATCGAGGGCCGGAACCAACGCGCCCACCCATTCGTGTGGACCAAGACCGCCGACGAAATCCTGCCCCACACTCGTAAACAAACTTCAGACGCGCGA
CAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1059 bp353 aa451103+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MPSSTLVISSEDRVTLESWTRSSTVPAGRVERARIVLAVADGAGTSGAARQVGVSRPTVIKWRDRFAAFGIEGLDDEPRSGRPKTVDDAEILATTLEPPP
ESLAVTHWSSRLLGKHLGIGDATVARAWRRYGVKPWRRETFKFSTDPELEAKVRDVIGLYLNPPEKAVVLCVDEKSQIQALNRTQPILPLRPGLPEKATH
DYQRNGTATLFAALEIATGKVTDRCYERHGKAEFLDFLKTVARAYPRRKLHVVCDNYHTHKHADINAWLVKNPRVTLHFTPTSGSWLNLVEVFFSIITRQ
AIRRGSFNSVKELIAAISAFIEGRNQRAHPFVWTKTADEILPHTRKQTSDARH

 

Blast result :
Comments
ISMsm5 is 62% aa similar to ISRso5.
References
1]Fleischmann,R.D., Dodson,R.J., Haft,D.H., Merkel,J.S., Nelson,W.C. and Fraser,C.M.(2006) Direct Submission GenBank.