ISMsm3

  • Family IS1380
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_008596 ND Mycobacterium smegmatis
Mycobacterium smegmatis MC2 155
DNA section
IS Length : 1695 bp

Ends


IR Length : 15/18

IRL : CCCAGATTTTTCGCGGATTATCTCTGGTGAGGGCGTGTAGATAAGCGAAA
IRR : CCCGGATTTTTCGTCGATGGTGATGGCGGTGGATTTGTAGGGCGTGATGG

Insertion site


Left flankDirect repeatRight flankDR Length
AGCACTCCCGCTAACTCGCGCTAG4
CTTCGCAGACCTAGGAGTGGACGA4

DNA sequence

CCCAGATTTTTCGCGGATTATCTCTGGTGAGGGCGTGTAGATAAGCGAAAGTGCCTGTCCTGCAAGGGATAATTGGACTTCTCTAGGGTTCAACCATCCT
GACGGGAAGGCACTTCGCAGGTGAAGAGTATCGCGGCCGCATCGCGGGTGAAAGTGTCAGCCGACGGCCACGGGGTCGTGTCGCACGCCGGGATGGGCCT
ACTGCGGGAACTGGCCGACCGGACCGGCCTATCAGCGCAGGTCACCGGCGCTTTGGCCGACACCTACCGCGGGCCGTGGACCTACGCACCCGGCGAGGTG
TTCGCCGATCTGGCCGCGGCGGTCGCCGACGGCGCGGACTGCATTGACGGGGTCGGCCAACTGTGCGGCGACCGTGAGCACGCGTTCGGCGCGAAAGCCT
CCACGACCACGATGTGGCGGCTGGTCGATGAGCGCATCGACGCCGCACACCTGCCTGCGGTGCGCGCGGCCCGCGCCAGCGCGCGGGCGGCGGCCTGGGC
CGCCGGTGCGGCCCCCGAACCGGGTGGCTGGCTGCACATCGACATCGACGCCACCGTGGTGATCGATCACTCCGACAACAAACACGGCGCGACGCCGACC
TGGAAGAAAACGTTCGGACACCATCCGCTGCTGGCGTTCCTGGACCGCCCCGAGATCGCCGGCGGGGAAGCCCTGGCCGGGCTGCTGCGCAGCGGCAACG
CGGGCTCCAACACCGCCAGCGACCACATCATCGTCCTGGCCCAGGCGCTGGCAGCGCTGCCCGCGCCGTGGCGGCCCGACTCGAGTCGTGGCGGTGATCC
CGACCGGCCCCAGGTGCTGGTGCGTTGCGACACCGCCGGAGCCACCCACCGATTCGCCGACGCCTGCCGCGAGCAGGGAGTCGGATTCTCCTTCGGCTAC
CCCGTCGACGCCCGCGTCCAGGACGCCGCCGACACCCTCAACCTTGCCGAGGGCTGGTACCCGGCCATCGACACCGACGGCGGCATCCGTGACGGCGCCT
GGGTCGCCGAGGCCACCACCTTGGTCAACCTCAACAGCTGGCCGCCGGGCACCCGGCTGATCCTGCGCAAGGAGAGACCGCATCCCGGCGCCCAGCTGCG
GTTCACCGACACCGACGGAATGCGCGTCACCGCGTTCATCACCGACACACCCACCGGTGTCGTGGCCGGCCAAGTCGCCGGCCTGGAGTTGCGGCACCGC
CAGCACGCCCGCGTCGAGGACCGCATCCGCGAACTCAAGAACACCGGCCTACGCAACCTGCCGTGTCACGGCTTCTGGGCCAACGCCGCCTGGCTCGAGA
TCGTCCTGGCCGCCACCGACCTGGTCACCTGGGCACGGCTCATCGGATTCACCAGTGATCCGACGCTGGCCCGCGCCGAGATCGCCACGTTCCGCTACCG
CGTGCTGCACGTCGCAGCCCGCATCACCCGCGGCGCCCGCCAACTCCGGCTGCGCATCGACGCCACCTGGCGCTGGGCATCGGCGATCGCCACCGCCTGG
CAACACCTGCGCACCGCCTTCGGATAACAGCCGGCCTCCCGACCGATCGATCACGAAAGACCTACCGGCCATGGGAAAGCCCGCCCCACCCGGCGACACG
GGACCACCCCAGCATGCCTTGTGACCGCAGACGTCACCCGACCAACCATCACGCCCTACAAATCCACCGCCATCACCATCGACGAAAAATCCGGG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1407 bp468 aa1211527+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MKSIAAASRVKVSADGHGVVSHAGMGLLRELADRTGLSAQVTGALADTYRGPWTYAPGEVFADLAAAVADGADCIDGVGQLCGDREHAFGAKASTTTMWR
LVDERIDAAHLPAVRAARASARAAAWAAGAAPEPGGWLHIDIDATVVIDHSDNKHGATPTWKKTFGHHPLLAFLDRPEIAGGEALAGLLRSGNAGSNTAS
DHIIVLAQALAALPAPWRPDSSRGGDPDRPQVLVRCDTAGATHRFADACREQGVGFSFGYPVDARVQDAADTLNLAEGWYPAIDTDGGIRDGAWVAEATT
LVNLNSWPPGTRLILRKERPHPGAQLRFTDTDGMRVTAFITDTPTGVVAGQVAGLELRHRQHARVEDRIRELKNTGLRNLPCHGFWANAAWLEIVLAATD
LVTWARLIGFTSDPTLARAEIATFRYRVLHVAARITRGARQLRLRIDATWRWASAIATAWQHLRTAFG

 

Blast result :
Comments
ISMsm3 is 87% aa similar to ISMyma2.
References
1] Fleischmann,R.D., Dodson,R.J., Haft,D.H., Merkel,J.S., Nelson,W.C. and Fraser,C.M.(2006) Direct Submission GenBank.