ISMsm4

  • Family ISL3
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_008596 ND Mycobacterium smegmatis
Mycobacterium smegmatis MC2 155
DNA section
IS Length : 1458 bp

Ends


IR Length : 24/30

IRL : GGCTCTTCGCACTTGATAGGGGTCTGGTGTTGTCCGACGTTGTGTCGTGT
IRR : GGCTCTTCGCAGTTAGCAGTGGCGTTGGTGCCGGCTGGGTGTGACTCGTC

Insertion site


Left flankDirect repeatRight flankDR Length
TCGCTGGCGGTGTTTATCATCGCCTCAG8
GCCGACTACGGGTTTGAACTAACTCCTC8
TTTTGTTGGTGTTAAACAGAAGGTCCGC8
TTCCGGCCCACCTATCTACGGGTGCGCG8

DNA sequence

GGCTCTTCGCACTTGATAGGGGTCTGGTGTTGTCCGACGTTGTGTCGTGTCGGTGATTGATTAGGGGTCCGCGCCCCTGTGAGCTGGGTGTTCTTCAGGC
ATCCAGGACAAGGAACGCGGACCATGGTTGACGGTAGTTCACTGCTGCTCGATCTCGACGGTGTGGTCGTCGAATCGGTGCAGCGCCTCGAGGACGGCAC
CCGGTTGGTGCAGGTGCTCACCGCCCCCCAGTGGGTCGGGATCTGCCCCGAATGCGGGGAACGCTCCACCAGGTCGAAAGGCTGGGTACAGACCGGACCC
CGCGACGTTGTGGTGGGTCCGGACCGCCCGATACTGCGCTGGCGTAAGCGAAAGTGGTTGTGCCCCAGCACGGTCTGTACGCGCAAGGTGTTCACCGAGT
CGGTGCCCGGAATCCCGGCGCGGGCGCGGGTAACACCGCGGGCCAAGGCGACGATGGCCACTGCGGTGCTCGACGAGGACCGTTCGGTGGCCGCGGTGGC
CGGGCAGTACCGCTGCGGCTGGCACACCGTGCACGACGAAGTCATCGCCACCGCCGAGGACGCCCTGGCCGGCGAGCTGGCGCCGGTGGCGGTGCTCGGC
ATCGACGAGACCCGACGCGGTAAGGCCAAATGGGAACACAACCCGGTACTCGGGCGGCGGGTATGGGTGGATCGCTGGGACACCGGACTGGTCGACATCA
CCGGCGATCAAGGCCTCCTTGGCCAGGTCAACGGCCGCACCTCGGCGGCAGTGATCGACTGGCTCGCTGGCCAGGACCCTGACTGGCGGGCCGCAATCAC
CCACGTAGCCATCGACCTGTCCCCGGCCTATGCCCGGGTGGCTCGCGAAGCACTGCCGCACGCGATCCTGATCGCCGACCGGTTCCACCTGGTCAAGAAA
GCCAACGACATGGTTGATGCGGTGCGCCGCCGGGTCACCTGGACCCAACGGGGCCGGCGCGGCCGCAAGGCCGATGTCGAGTGGATCAACCGCCGCCGCC
TGCTGCGCGGCTCCGAGCGGCTCACCGCAGACCAACGCGCCACGTTGTTCGCCAAGCTGCTCTCCGCCGACCCCAACCAGGACATCGCCGCGGCCTGGAT
CGCCAAAGAACTGCTGCGCGACCTGCTTTCCTGCGCCGACCGCGGCGGGTTGCGCTACGAGATCACGACCGCCCTGGACCGGTTCTACCGTTTCTGCGCG
GCCTGCACAGTGCCCGAAGTGATCCGACTGGCCCGCACCATCGAGACCTGGCAGGCCCCCATCATCGCCGCCCTGCAGACCGGCCTGTCCAACGCCCGCA
CCGAAGGCTACAACCGCATCGTCAAACACGTCGGGCGCATCGCCTTCGGCTTCCGCAATCCTGAGAACCAACGCCGCCGAGTACGGTGGGCCTGCACTCG
CCGATCACGACGAGTCACACCCAGCCGGCACCAACGCCACTGCTAACTGCGAAGAGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1368 bp455 aa791446+No
ORF function : Transposase
Chemistry : Unknow

ORF sequence :

MSWVFFRHPGQGTRTMVDGSSLLLDLDGVVVESVQRLEDGTRLVQVLTAPQWVGICPECGERSTRSKGWVQTGPRDVVVGPDRPILRWRKRKWLCPSTVC
TRKVFTESVPGIPARARVTPRAKATMATAVLDEDRSVAAVAGQYRCGWHTVHDEVIATAEDALAGELAPVAVLGIDETRRGKAKWEHNPVLGRRVWVDRW
DTGLVDITGDQGLLGQVNGRTSAAVIDWLAGQDPDWRAAITHVAIDLSPAYARVAREALPHAILIADRFHLVKKANDMVDAVRRRVTWTQRGRRGRKADV
EWINRRRLLRGSERLTADQRATLFAKLLSADPNQDIAAAWIAKELLRDLLSCADRGGLRYEITTALDRFYRFCAACTVPEVIRLARTIETWQAPIIAALQ
TGLSNARTEGYNRIVKHVGRIAFGFRNPENQRRRVRWACTRRSRRVTPSRHQRHC

 

Blast result :
Comments
ISMsm4 is 76% aa similar to IS204.
References
1] Fleischmann,R.D., Dodson,R.J., Haft,D.H., Merkel,J.S., Nelson,W.C. and Fraser,C.M. (2006) Direct Submission GenBank.