ISLhe9

  • Family IS607
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP000517 ND Lactobacillus helveticus
Lactobacillus helveticus DPC 4571
DNA section
IS Length : 2607 bp

Ends


IR Length : 0

IRL : GGGTTATCAGCAGTTAACAAAATAAATATTAAAAAGTGGCAAAATCTGTT
IRR : CCGAATTATAAAACCTAATAAAAACTAATATTCCTAATAGCTTTTATCAT

Insertion site


Left flankDirect repeatRight flankDR Length
CCTTACATTCACTCAGCTCGTGAAGTAAAATTGCTTGG0

DNA sequence

GGGTTATCAGCAGTTAACAAAATAAATATTAAAAAGTGGCAAAATCTGTTAATTTATGTCAATAAGTGATATAATCTCCTTAACGAAAGTTGAGGAGTTT
TTTTATGGCATCCAATACACAATTACCCAAGTATTTATCTATCGGACAAGCTTCTAAATATTTAAATATCGCAATTCCTACTCTAAGGCTGTGGGAAAGA
AAAGGAATTATTAAGCCAATCAGAACTGCTGGAAATCAAAGAAGATATACCCTGCAAATGCTGGATGATGCACTAGCAGGGAAAAAGCCTGCCAAGCCAG
TATCCAAAGATAAATTGATAATTGGCTATTGTCGTGTCTCTTCTGCCGGACAAAAAAACGATTTAAAGCGTCAAATAGCAGTAGTTACTAATTTCTGTGA
AATGCAAGGCAAGCCGTTTAAAATTATTTCTGATATTGGTTCAGGGCTTAATTATCACAAAAAAGGCTTAAAAGAGCTGATTCATCTGATCTGCACCCAG
CAATGCAGTCAAGTAGTAGTCAATTATCAGGATCGTTTAGTTAGATTTGGTTTTGAATTAATTGAAGACATATGCCAAGAAAACGATGTTGAAATAACAG
TTATTAATCAAACCAAAGCCGAAAGCTCTAATGAAGAGCTAGTAGACGATGTGCTTTCAGTTATTACTGTTTATTCTGCTAAGCTTTATGGAAAGAGAAG
CCATCATAATGAAAAGATCATCAAAACCAATCAAGAGCTATTCAAAGACCGTTAGAGCATACTCGCTTAAGCTTGATGAAGATACTTATACTAAATTAGA
TCAGCTTTTTATAAATTATGGCAAATGTCGCAATATGTTTCTAAATCAATATTGTGGCATCAGTCATATGCTTGATGTTAAGCAGTATCGCAAATTACGT
GATCAAATTAAAGGCTCTAAGCAAAACAAAAAGTATGTAGCCAAATACAATTTCTTAGATAAACATTGGTGTTACGCATTAAGCGATGCTTGTGCCAACA
TCAATTCGATGTGGAGTAATTTAGCTAACCAAATTCGTAGAGTCGTGCAAGCAAATGAGGCAATAGATAAAGATGAAAGACACTTGATCTACTATCTGCT
TTCCATTAGAGAGTTGTGGTATTATGCCTTAACCAACAATCAAGCAGTACTTTTAGATTTGTCTCACGGATTGCAAAAGCACCTAGCAGAATTAGAAGAA
GCTGTTACGCCTAAACAAAGAAAACATGCTTATTCATATTTAAGCAGATTAACTAGACGCTATAAATATACTCCTCGAAAGCATCATAGCTTAAATAAAT
CTATGACTTATGATGAAAGCATGTACAAGTTTACCGGCGATCAGCTAGAAGAACTTGCCATTTCATCGCATGTATCAAGAAAGAGATTTAGTTTAAAGCT
GACAAGTCCATGGCATTATCGTTTAAATGGCAATTTACAAATTATCTTAGATCGCGATAAAAAGCGGCTTGAAATTCATAAGGTAATTAAAGTTAGACAA
AAGAAAGAATATCAAGCAGGCACTAAACTCGGTATTGATAAAGGGCTTGCCACGCTGGTTTCTTGCAGTAGTGGTCGTGAATATGGCAAAGGTTTTAGCC
AGTTTACTAGACCTGAAATTGAACAGGAAAGCCAATACTTAGCTAGACGCAATCCTTATTACGGTTATCGCTATCAATTAAAGAAAAAGCTTAATCAGCT
AAAAAACGCCAATATACCTAAACAAATTATCAAGAAAAAGCAATTAACTAGGCAATTAAACAAGTTGAACGCTAATAATATTGGTCATAAGCGCAAAGAT
AAGCGCCACGCATCTTATCATGCTTGTCTTGAAAGCAAAATTAACCATGCAATTAAAACAATGATTAAGCTGGAAACACCAAGTTTGATTGTTAAAGAAG
ATTTGACCTTTACTAAGGAAAAAATAGCTAAGAAAGGCAGTAAATATGAACGCCAAGTTAGACGCACTCTTTCATCATGGACTAAAGGAGTATTAAATGA
ACGTTTAGAGTATTATTGCCAGCAATATGGCATTGACTTTAAAGACGTTAACCCAGCCTACACTTCCCAATATTGTCCAAATTGCGGACGGCACTTTATC
GTAAGATTTGGCAAGCACAATGAAAAGACCTTATGTCCTAATTGTGGAGAAATGGACTGTAATATCGCCGCATCAAAGAATATCCTAGCAAGAGCCACAG
ATAAAGAAATTACGCTTTATAAGCCATATAAAAAAGTAAAAGCAATTCTTGATCAAAGAATTGCCAGTTAAGAAGAATTATTAAATAAGTCGACTGCCAC
AAAGCGAAAGGCGGAATGCCTCTCCTTTTATCAGCTAAGCTGAGGACATGTCGCAAAGGACTTTAAGTCCATTCTTAGAGCTAGGGAATGTTCCTAGGCT
AAAGAAAAACAAGAATCGAAGAACCTTCATGTGGGGCAGATCAAAGCCAGTCCCTATTAATAGGGTAATAGAAATATTAACCGCGCCGCGTTCAACCGTA
CCCACAGAGCTTAACGCTTAAAAAAATCGCTCTAGCAAAAGCTAGAGTGAGTGAGACATGATAAAAGCTATTAGGAATATTAGTTTTTATTAGGTTTTAT
AATTCGG
Protein section
ORF number : 2

 

ORF 1
LengthBeginEndStrandFusion ORF
651 bp216 aa105755+No
ORF function : Transposase
Chemistry : Serine

ORF sequence :

MASNTQLPKYLSIGQASKYLNIAIPTLRLWERKGIIKPIRTAGNQRRYTLQMLDDALAGKKPAKPVSKDKLIIGYCRVSSAGQKNDLKRQIAVVTNFCEM
QGKPFKIISDIGSGLNYHKKGLKELIHLICTQQCSQVVVNYQDRLVRFGFELIEDICQENDVEITVINQTKAESSNEELVDDVLSVITVYSAKLYGKRSH
HNEKIIKTNQELFKDR

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
1584 bp527 aa6882271+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MEREAIIMKRSSKPIKSYSKTVRAYSLKLDEDTYTKLDQLFINYGKCRNMFLNQYCGISHMLDVKQYRKLRDQIKGSKQNKKYVAKYNFLDKHWCYALSD
ACANINSMWSNLANQIRRVVQANEAIDKDERHLIYYLLSIRELWYYALTNNQAVLLDLSHGLQKHLAELEEAVTPKQRKHAYSYLSRLTRRYKYTPRKHH
SLNKSMTYDESMYKFTGDQLEELAISSHVSRKRFSLKLTSPWHYRLNGNLQIILDRDKKRLEIHKVIKVRQKKEYQAGTKLGIDKGLATLVSCSSGREYG
KGFSQFTRPEIEQESQYLARRNPYYGYRYQLKKKLNQLKNANIPKQIIKKKQLTRQLNKLNANNIGHKRKDKRHASYHACLESKINHAIKTMIKLETPSL
IVKEDLTFTKEKIAKKGSKYERQVRRTLSSWTKGVLNERLEYYCQQYGIDFKDVNPAYTSQYCPNCGRHFIVRFGKHNEKTLCPNCGEMDCNIAASKNIL
ARATDKEITLYKPYKKVKAILDQRIAS

 

Blast result :
Comments
ISLhe9 is 65% (ORFA) aa similar to ISCfe1.
References
1] Callanan,M., Kaleta,P., O'Callaghan,J., O'Sullivan,O., Jordan,K., McAuliffe,O., Sangrador-Vegas,A., Slattery,L., Fitzgerald,G.F., Beresford,T. and Ross,R.P. (2007) J. Bacteriol. In press