ISDvu5
- Family ISL3
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_002937 | ND | Desulfovibrio vulgaris | Desulfovibrio vulgaris subsp. vulgaris Hildenborough |
DNA section
IS Length : 1357 bp
Ends
IR Length : 20/28
IRL : GGTTCCTCGCCGCGAGACGTGGAAATCAGCTTTCTTGACTCTCCTTCCTG
IRR : GGTCTTCGACGTTAGCTGTGGAATTCACGCCTCCAAGAGTTGGGTGATGG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TTCAATTGAAAAGAAAACT | CTAAAAACGTGAGGGATTGA | 0 |
DNA sequence
GGTTCCTCGCCGCGAGACGTGGAAATCAGCTTTCTTGACTCTCCTTCCTGACGCATCGTAGCCTTTCCTTTTGCCCAGGAGGGAAGGAGCCGTGGAAGCT
AACGATTTACTGACGTTGGGCCTTGGCCTCACAGCTCCCTGGCGAGTCGTGGACCAGTCTCTGGACCTTTCAAAGCAGCCAAGCGAACTTCGCCTTGAGG
TCGAGGCCGCGAGAGGTGAGCGCTACCCTTGCCCGGCGTGCGGTGCGTTGTGTAAGGCCCATGATTTCGCTGAGTTCAGCTGGCGGCATCTCAACTTCTT
CCAGCATCACTGCCTGATCAAGGCCCGTGTCCCCCGAGTGAGATGCCCGGAACATGGCCTCAAGCGCGTCAATGTCCCATGGGCACGGCCTGGCAGCGGG
TTCACCCTGCTTTTCGAGCAAGCGGTCATGCTTCTTGCCCGAGAGATGCCGGTCAACGCCGTGGCGCGTTACGTCGGCGTCACCGACAAGCGGATATGGC
GGGTCGTGACGCACTACGTCTTGAAGGGCATGGGCAAGCTTGATCTCAGCCGACTGTGCGGAATCGGCCTTGACGAAACGGCAACCAAGCGTGGCCATCA
TTACGTCACCATCTTCGTGGACATGGACCGGGAAAGCCGCCCGGTGGTCTTCGCGACTCCAGGCAAAGGCAAGGAATGCCTCAAGACCTTTGCCGCGTAC
CTCAAAGGGCGTCAGGGCAATCCGGAGAACGTGGTCGAGGTGGTCTGCGACATGTCACCAGCTTTTCTGTCGGCGGCCGAGGCGACCTTCAGAAATGCCG
CTGTAACCGTGGACTGGTTCCATGTGGTTCAGATTTTCACCAAAGCCCTCGACGAGGTCAGGCGTCTGGAAGCCAGAGAGGTCATACTTCCCAAGGCTGC
CCGGTGGGCGGTTCTCAAGGGCCTGGAAACTTGGCGTATCGAGGAGCAGGTCGCGGCGCTCAAGGAGTTGGAGGAACGTGGATTGGCGACAGCCACCGCG
TTTCGGGTGAAGGAACTGCTGCGGTGGGTGCGCAAAGCTGACACCAGGCAGGGTGCGCGATGGCGAGCAACGCGGTTTTTCGAATTCGCTCGGGAACTTG
CCGGGGATTCGGTTCTGCTCGCACCGGTACGCAAGGCGCTGAACACGTTCGAGGATCATTTGCCTCGAATATTGAGAAGATGGGACTCCTTGCTTTCCAA
TGCTCGCTTGGAAGGGCTCAATGGCCTCTTTCAGGCTGCTCGCTCGCGGGCCAGAGGGTATCGGAACGTAACAACCTTCATCACCATGATCTACCTGATC
GGAGCGCCCATCACCCAACTCTTGGAGGCGTGAATTCCACAGCTAACGTCGAAGACC
AACGATTTACTGACGTTGGGCCTTGGCCTCACAGCTCCCTGGCGAGTCGTGGACCAGTCTCTGGACCTTTCAAAGCAGCCAAGCGAACTTCGCCTTGAGG
TCGAGGCCGCGAGAGGTGAGCGCTACCCTTGCCCGGCGTGCGGTGCGTTGTGTAAGGCCCATGATTTCGCTGAGTTCAGCTGGCGGCATCTCAACTTCTT
CCAGCATCACTGCCTGATCAAGGCCCGTGTCCCCCGAGTGAGATGCCCGGAACATGGCCTCAAGCGCGTCAATGTCCCATGGGCACGGCCTGGCAGCGGG
TTCACCCTGCTTTTCGAGCAAGCGGTCATGCTTCTTGCCCGAGAGATGCCGGTCAACGCCGTGGCGCGTTACGTCGGCGTCACCGACAAGCGGATATGGC
GGGTCGTGACGCACTACGTCTTGAAGGGCATGGGCAAGCTTGATCTCAGCCGACTGTGCGGAATCGGCCTTGACGAAACGGCAACCAAGCGTGGCCATCA
TTACGTCACCATCTTCGTGGACATGGACCGGGAAAGCCGCCCGGTGGTCTTCGCGACTCCAGGCAAAGGCAAGGAATGCCTCAAGACCTTTGCCGCGTAC
CTCAAAGGGCGTCAGGGCAATCCGGAGAACGTGGTCGAGGTGGTCTGCGACATGTCACCAGCTTTTCTGTCGGCGGCCGAGGCGACCTTCAGAAATGCCG
CTGTAACCGTGGACTGGTTCCATGTGGTTCAGATTTTCACCAAAGCCCTCGACGAGGTCAGGCGTCTGGAAGCCAGAGAGGTCATACTTCCCAAGGCTGC
CCGGTGGGCGGTTCTCAAGGGCCTGGAAACTTGGCGTATCGAGGAGCAGGTCGCGGCGCTCAAGGAGTTGGAGGAACGTGGATTGGCGACAGCCACCGCG
TTTCGGGTGAAGGAACTGCTGCGGTGGGTGCGCAAAGCTGACACCAGGCAGGGTGCGCGATGGCGAGCAACGCGGTTTTTCGAATTCGCTCGGGAACTTG
CCGGGGATTCGGTTCTGCTCGCACCGGTACGCAAGGCGCTGAACACGTTCGAGGATCATTTGCCTCGAATATTGAGAAGATGGGACTCCTTGCTTTCCAA
TGCTCGCTTGGAAGGGCTCAATGGCCTCTTTCAGGCTGCTCGCTCGCGGGCCAGAGGGTATCGGAACGTAACAACCTTCATCACCATGATCTACCTGATC
GGAGCGCCCATCACCCAACTCTTGGAGGCGTGAATTCCACAGCTAACGTCGAAGACC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1242 bp | 413 aa | 92 | 1333 | + | No |
Chemistry : Unknow
ORF sequence :
MEANDLLTLGLGLTAPWRVVDQSLDLSKQPSELRLEVEAARGERYPCPACGALCKAHDFAEFSWRHLNFFQHHCLIKARVPRVRCPEHGLKRVNVPWARP
GSGFTLLFEQAVMLLAREMPVNAVARYVGVTDKRIWRVVTHYVLKGMGKLDLSRLCGIGLDETATKRGHHYVTIFVDMDRESRPVVFATPGKGKECLKTF
AAYLKGRQGNPENVVEVVCDMSPAFLSAAEATFRNAAVTVDWFHVVQIFTKALDEVRRLEAREVILPKAARWAVLKGLETWRIEEQVAALKELEERGLAT
ATAFRVKELLRWVRKADTRQGARWRATRFFEFARELAGDSVLLAPVRKALNTFEDHLPRILRRWDSLLSNARLEGLNGLFQAARSRARGYRNVTTFITMI
YLIGAPITQLLEA
GSGFTLLFEQAVMLLAREMPVNAVARYVGVTDKRIWRVVTHYVLKGMGKLDLSRLCGIGLDETATKRGHHYVTIFVDMDRESRPVVFATPGKGKECLKTF
AAYLKGRQGNPENVVEVVCDMSPAFLSAAEATFRNAAVTVDWFHVVQIFTKALDEVRRLEAREVILPKAARWAVLKGLETWRIEEQVAALKELEERGLAT
ATAFRVKELLRWVRKADTRQGARWRATRFFEFARELAGDSVLLAPVRKALNTFEDHLPRILRRWDSLLSNARLEGLNGLFQAARSRARGYRNVTTFITMI
YLIGAPITQLLEA
Blast result :
Comments
ISDvu5 is 58% aa similar to ISTfe1.
References
1] Heidelberg,J.F., Seshadri,R., Haveman,S.A., Hemme,C.L., Paulsen,I.T., Kolonay,J.F., Eisen,J.A., Ward,N., Methe,B., Brinkac,L.M., Daugherty,S.C., Deboy,R.T., Dodson,R.J., Durkin,A.S., Madupu,R., Nelson,W.C., Sullivan,S.A., Fouts,D., Haft,D.H., Selengut,J., Peterson,J.D., Davidsen,T.M., Zafar,N., Zhou,L., Radune,D., Dimitrov,G., Hance,M., Tran,K., Khouri,H., Gill,J., Utterback,T.R., Feldblyum,T.V., Wall,J.D., Voordouw,G. and Fraser,C.M. (2004) Nat. Biotechnol. 22 (5), 554-559.