ISDvu5

  • Family ISL3
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_002937 ND Desulfovibrio vulgaris
Desulfovibrio vulgaris subsp. vulgaris Hildenborough
DNA section
IS Length : 1357 bp

Ends


IR Length : 20/28

IRL : GGTTCCTCGCCGCGAGACGTGGAAATCAGCTTTCTTGACTCTCCTTCCTG
IRR : GGTCTTCGACGTTAGCTGTGGAATTCACGCCTCCAAGAGTTGGGTGATGG

Insertion site


Left flankDirect repeatRight flankDR Length
TTCAATTGAAAAGAAAACTCTAAAAACGTGAGGGATTGA0

DNA sequence

GGTTCCTCGCCGCGAGACGTGGAAATCAGCTTTCTTGACTCTCCTTCCTGACGCATCGTAGCCTTTCCTTTTGCCCAGGAGGGAAGGAGCCGTGGAAGCT
AACGATTTACTGACGTTGGGCCTTGGCCTCACAGCTCCCTGGCGAGTCGTGGACCAGTCTCTGGACCTTTCAAAGCAGCCAAGCGAACTTCGCCTTGAGG
TCGAGGCCGCGAGAGGTGAGCGCTACCCTTGCCCGGCGTGCGGTGCGTTGTGTAAGGCCCATGATTTCGCTGAGTTCAGCTGGCGGCATCTCAACTTCTT
CCAGCATCACTGCCTGATCAAGGCCCGTGTCCCCCGAGTGAGATGCCCGGAACATGGCCTCAAGCGCGTCAATGTCCCATGGGCACGGCCTGGCAGCGGG
TTCACCCTGCTTTTCGAGCAAGCGGTCATGCTTCTTGCCCGAGAGATGCCGGTCAACGCCGTGGCGCGTTACGTCGGCGTCACCGACAAGCGGATATGGC
GGGTCGTGACGCACTACGTCTTGAAGGGCATGGGCAAGCTTGATCTCAGCCGACTGTGCGGAATCGGCCTTGACGAAACGGCAACCAAGCGTGGCCATCA
TTACGTCACCATCTTCGTGGACATGGACCGGGAAAGCCGCCCGGTGGTCTTCGCGACTCCAGGCAAAGGCAAGGAATGCCTCAAGACCTTTGCCGCGTAC
CTCAAAGGGCGTCAGGGCAATCCGGAGAACGTGGTCGAGGTGGTCTGCGACATGTCACCAGCTTTTCTGTCGGCGGCCGAGGCGACCTTCAGAAATGCCG
CTGTAACCGTGGACTGGTTCCATGTGGTTCAGATTTTCACCAAAGCCCTCGACGAGGTCAGGCGTCTGGAAGCCAGAGAGGTCATACTTCCCAAGGCTGC
CCGGTGGGCGGTTCTCAAGGGCCTGGAAACTTGGCGTATCGAGGAGCAGGTCGCGGCGCTCAAGGAGTTGGAGGAACGTGGATTGGCGACAGCCACCGCG
TTTCGGGTGAAGGAACTGCTGCGGTGGGTGCGCAAAGCTGACACCAGGCAGGGTGCGCGATGGCGAGCAACGCGGTTTTTCGAATTCGCTCGGGAACTTG
CCGGGGATTCGGTTCTGCTCGCACCGGTACGCAAGGCGCTGAACACGTTCGAGGATCATTTGCCTCGAATATTGAGAAGATGGGACTCCTTGCTTTCCAA
TGCTCGCTTGGAAGGGCTCAATGGCCTCTTTCAGGCTGCTCGCTCGCGGGCCAGAGGGTATCGGAACGTAACAACCTTCATCACCATGATCTACCTGATC
GGAGCGCCCATCACCCAACTCTTGGAGGCGTGAATTCCACAGCTAACGTCGAAGACC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1242 bp413 aa921333+No
ORF function : Transposase
Chemistry : Unknow

ORF sequence :

MEANDLLTLGLGLTAPWRVVDQSLDLSKQPSELRLEVEAARGERYPCPACGALCKAHDFAEFSWRHLNFFQHHCLIKARVPRVRCPEHGLKRVNVPWARP
GSGFTLLFEQAVMLLAREMPVNAVARYVGVTDKRIWRVVTHYVLKGMGKLDLSRLCGIGLDETATKRGHHYVTIFVDMDRESRPVVFATPGKGKECLKTF
AAYLKGRQGNPENVVEVVCDMSPAFLSAAEATFRNAAVTVDWFHVVQIFTKALDEVRRLEAREVILPKAARWAVLKGLETWRIEEQVAALKELEERGLAT
ATAFRVKELLRWVRKADTRQGARWRATRFFEFARELAGDSVLLAPVRKALNTFEDHLPRILRRWDSLLSNARLEGLNGLFQAARSRARGYRNVTTFITMI
YLIGAPITQLLEA

 

Blast result :
Comments
ISDvu5 is 58% aa similar to ISTfe1.
References
1] Heidelberg,J.F., Seshadri,R., Haveman,S.A., Hemme,C.L., Paulsen,I.T., Kolonay,J.F., Eisen,J.A., Ward,N., Methe,B., Brinkac,L.M., Daugherty,S.C., Deboy,R.T., Dodson,R.J., Durkin,A.S., Madupu,R., Nelson,W.C., Sullivan,S.A., Fouts,D., Haft,D.H., Selengut,J., Peterson,J.D., Davidsen,T.M., Zafar,N., Zhou,L., Radune,D., Dimitrov,G., Hance,M., Tran,K., Khouri,H., Gill,J., Utterback,T.R., Feldblyum,T.V., Wall,J.D., Voordouw,G. and Fraser,C.M. (2004) Nat. Biotechnol. 22 (5), 554-559.