ISPa16
- Family IS5
- Group IS5
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AJ877225 | ND | Pseudomonas aeruginosa | Pseudomonas aeruginosa plasmid Rms149 |
DNA section
IS Length : 1192 bp
Ends
IR Length : 12
IRL : GGAAGGTCTGAAAAAGACTTCCCGCATCTGGTGAAATACGCCGATCCCGC
IRR : GGAAGGTCTGAAGTAGCCCTGTATTTCCGGTCGACTTCAGCCCTCGCTGC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TGAAAGCTCT | CTAG | GGGCAGATGC | 4 |
DNA sequence
GGAAGGTCTGAAAAAGACTTCCCGCATCTGGTGAAATACGCCGATCCCGCCAGCCGAGTTTTTCCATGAAGCAGATGACCTTCGCCGACGCCGAGTACGC
CGGCAAGCGCAAGCAGACCCGTAAGGAATTGTTCCTGATCGAGATGGATCAGGTGGTGCCGTGGAAGGGATTGATTGCCCTGATCGAGCCACACTACCCA
AAGGGTGAAGGTGGTCGTCCAGCCTATCCGCTGATGGCCATGTTACGTATCCATCTGATGCAGAACTGGTTCGGCTACAGCGACCCGGCCATGGAAGAAG
CGCTCTACGAGACGACCATCCTGCGTCAGTTCGCCGGGCTGAGCCTGGAGCGCATTCCCGACGAAACCACCATCCTCAACTTCCGTCGTTTGCTGGAGAA
ACATGAGCTGGCAGCCGGCATCCTCGGCGTAATCAATGGCTACCTGGGGGATCGCGGCCTGTCGCTGCGCCAGGGCACTATCGTCGATGCCACACTGATC
CACGCGCCCAGCTCGACCAAGAACCAGGACGGCAAGCGCGACCCGGAAATGCACCAGAGCAAGAAAGGGAACCAGTATTACTTTGGCATGAAGGCGCACA
TCGGCGTGGATGATGAGTCGGGGCTGGTACACAGCGTGGTAGGCACGGCAGCCAACGTGGCGGATATCACCCAGGTCGACAAACTGCTGCACGGTGACGA
GAACGTCGTCTGCGCCGATGCCGGCTACACCGGCGTCGAAAAGCGCCCCGAACATGCTGGCCGCGAAGTGATCTGGCAGGTCGCAGCACGCCGCAGCACC
TACAAGAAGCTCGATAAACGCAGCGCCCTGTACAAAGCCAAGCGCAAGATCGAGAAGGCCAAGGCACAAGTGCGAGCGAAGGTCGAGCACCCGTTTCGAG
TGATCAAGCGCCAGTTCGGTTACGTGAAGGTGCGCTTCCGTGGCCTGGCCAAGAACACCGCTCAGCTGGTGACGCTGTTCGCGCTGTCGAACCTATGGAT
GGCGCGCCGACATTTGCTGACTACCGCAGGAAAGGTGCACCTGTAATGCGGAAAATGGCTGCTGCGAGGTGCTCGCGGCGGCCAAAAACGGAGAACTGAG
CGGGTTATCTGGTCGATTTTGATCGACGGCCCGCTTTCAAAAGCAGCGAGGGCTGAAGTCGACCGGAAATACAGGGCTACTTCAGACCTTCC
CGGCAAGCGCAAGCAGACCCGTAAGGAATTGTTCCTGATCGAGATGGATCAGGTGGTGCCGTGGAAGGGATTGATTGCCCTGATCGAGCCACACTACCCA
AAGGGTGAAGGTGGTCGTCCAGCCTATCCGCTGATGGCCATGTTACGTATCCATCTGATGCAGAACTGGTTCGGCTACAGCGACCCGGCCATGGAAGAAG
CGCTCTACGAGACGACCATCCTGCGTCAGTTCGCCGGGCTGAGCCTGGAGCGCATTCCCGACGAAACCACCATCCTCAACTTCCGTCGTTTGCTGGAGAA
ACATGAGCTGGCAGCCGGCATCCTCGGCGTAATCAATGGCTACCTGGGGGATCGCGGCCTGTCGCTGCGCCAGGGCACTATCGTCGATGCCACACTGATC
CACGCGCCCAGCTCGACCAAGAACCAGGACGGCAAGCGCGACCCGGAAATGCACCAGAGCAAGAAAGGGAACCAGTATTACTTTGGCATGAAGGCGCACA
TCGGCGTGGATGATGAGTCGGGGCTGGTACACAGCGTGGTAGGCACGGCAGCCAACGTGGCGGATATCACCCAGGTCGACAAACTGCTGCACGGTGACGA
GAACGTCGTCTGCGCCGATGCCGGCTACACCGGCGTCGAAAAGCGCCCCGAACATGCTGGCCGCGAAGTGATCTGGCAGGTCGCAGCACGCCGCAGCACC
TACAAGAAGCTCGATAAACGCAGCGCCCTGTACAAAGCCAAGCGCAAGATCGAGAAGGCCAAGGCACAAGTGCGAGCGAAGGTCGAGCACCCGTTTCGAG
TGATCAAGCGCCAGTTCGGTTACGTGAAGGTGCGCTTCCGTGGCCTGGCCAAGAACACCGCTCAGCTGGTGACGCTGTTCGCGCTGTCGAACCTATGGAT
GGCGCGCCGACATTTGCTGACTACCGCAGGAAAGGTGCACCTGTAATGCGGAAAATGGCTGCTGCGAGGTGCTCGCGGCGGCCAAAAACGGAGAACTGAG
CGGGTTATCTGGTCGATTTTGATCGACGGCCCGCTTTCAAAAGCAGCGAGGGCTGAAGTCGACCGGAAATACAGGGCTACTTCAGACCTTCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
981 bp | 326 aa | 66 | 1046 | + | No |
Chemistry : DDE
ORF sequence :
MKQMTFADAEYAGKRKQTRKELFLIEMDQVVPWKGLIALIEPHYPKGEGGRPAYPLMAMLRIHLMQNWFGYSDPAMEEALYETTILRQFAGLSLERIPDE
TTILNFRRLLEKHELAAGILGVINGYLGDRGLSLRQGTIVDATLIHAPSSTKNQDGKRDPEMHQSKKGNQYYFGMKAHIGVDDESGLVHSVVGTAANVAD
ITQVDKLLHGDENVVCADAGYTGVEKRPEHAGREVIWQVAARRSTYKKLDKRSALYKAKRKIEKAKAQVRAKVEHPFRVIKRQFGYVKVRFRGLAKNTAQ
LVTLFALSNLWMARRHLLTTAGKVHL
TTILNFRRLLEKHELAAGILGVINGYLGDRGLSLRQGTIVDATLIHAPSSTKNQDGKRDPEMHQSKKGNQYYFGMKAHIGVDDESGLVHSVVGTAANVAD
ITQVDKLLHGDENVVCADAGYTGVEKRPEHAGREVIWQVAARRSTYKKLDKRSALYKAKRKIEKAKAQVRAKVEHPFRVIKRQFGYVKVRFRGLAKNTAQ
LVTLFALSNLWMARRHLLTTAGKVHL
Blast result :
Comments
ISPa16 is 99% aa similar to ISPpu18.
Found in Tn1011.
Found in Tn1011.
References
1] Haines A.S., Jones K., Cheung M., Thomas C.M. (2005) J. Bacteriol. 187(14) 4728-4738