ISPa16

  • Family IS5
  • Group IS5
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AJ877225 ND Pseudomonas aeruginosa
Pseudomonas aeruginosa plasmid Rms149
DNA section
IS Length : 1192 bp

Ends


IR Length : 12

IRL : GGAAGGTCTGAAAAAGACTTCCCGCATCTGGTGAAATACGCCGATCCCGC
IRR : GGAAGGTCTGAAGTAGCCCTGTATTTCCGGTCGACTTCAGCCCTCGCTGC

Insertion site


Left flankDirect repeatRight flankDR Length
TGAAAGCTCTCTAGGGGCAGATGC4

DNA sequence

GGAAGGTCTGAAAAAGACTTCCCGCATCTGGTGAAATACGCCGATCCCGCCAGCCGAGTTTTTCCATGAAGCAGATGACCTTCGCCGACGCCGAGTACGC
CGGCAAGCGCAAGCAGACCCGTAAGGAATTGTTCCTGATCGAGATGGATCAGGTGGTGCCGTGGAAGGGATTGATTGCCCTGATCGAGCCACACTACCCA
AAGGGTGAAGGTGGTCGTCCAGCCTATCCGCTGATGGCCATGTTACGTATCCATCTGATGCAGAACTGGTTCGGCTACAGCGACCCGGCCATGGAAGAAG
CGCTCTACGAGACGACCATCCTGCGTCAGTTCGCCGGGCTGAGCCTGGAGCGCATTCCCGACGAAACCACCATCCTCAACTTCCGTCGTTTGCTGGAGAA
ACATGAGCTGGCAGCCGGCATCCTCGGCGTAATCAATGGCTACCTGGGGGATCGCGGCCTGTCGCTGCGCCAGGGCACTATCGTCGATGCCACACTGATC
CACGCGCCCAGCTCGACCAAGAACCAGGACGGCAAGCGCGACCCGGAAATGCACCAGAGCAAGAAAGGGAACCAGTATTACTTTGGCATGAAGGCGCACA
TCGGCGTGGATGATGAGTCGGGGCTGGTACACAGCGTGGTAGGCACGGCAGCCAACGTGGCGGATATCACCCAGGTCGACAAACTGCTGCACGGTGACGA
GAACGTCGTCTGCGCCGATGCCGGCTACACCGGCGTCGAAAAGCGCCCCGAACATGCTGGCCGCGAAGTGATCTGGCAGGTCGCAGCACGCCGCAGCACC
TACAAGAAGCTCGATAAACGCAGCGCCCTGTACAAAGCCAAGCGCAAGATCGAGAAGGCCAAGGCACAAGTGCGAGCGAAGGTCGAGCACCCGTTTCGAG
TGATCAAGCGCCAGTTCGGTTACGTGAAGGTGCGCTTCCGTGGCCTGGCCAAGAACACCGCTCAGCTGGTGACGCTGTTCGCGCTGTCGAACCTATGGAT
GGCGCGCCGACATTTGCTGACTACCGCAGGAAAGGTGCACCTGTAATGCGGAAAATGGCTGCTGCGAGGTGCTCGCGGCGGCCAAAAACGGAGAACTGAG
CGGGTTATCTGGTCGATTTTGATCGACGGCCCGCTTTCAAAAGCAGCGAGGGCTGAAGTCGACCGGAAATACAGGGCTACTTCAGACCTTCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
981 bp326 aa661046+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MKQMTFADAEYAGKRKQTRKELFLIEMDQVVPWKGLIALIEPHYPKGEGGRPAYPLMAMLRIHLMQNWFGYSDPAMEEALYETTILRQFAGLSLERIPDE
TTILNFRRLLEKHELAAGILGVINGYLGDRGLSLRQGTIVDATLIHAPSSTKNQDGKRDPEMHQSKKGNQYYFGMKAHIGVDDESGLVHSVVGTAANVAD
ITQVDKLLHGDENVVCADAGYTGVEKRPEHAGREVIWQVAARRSTYKKLDKRSALYKAKRKIEKAKAQVRAKVEHPFRVIKRQFGYVKVRFRGLAKNTAQ
LVTLFALSNLWMARRHLLTTAGKVHL

 

Blast result :
Comments
ISPa16 is 99% aa similar to ISPpu18.
Found in Tn1011.
References
1] Haines A.S., Jones K., Cheung M., Thomas C.M. (2005) J. Bacteriol. 187(14) 4728-4738