ISfinder Mirror Site

ISHne5

Family IS110
Group

MGE type ISRelated element(s) :
Isoform Synonym(s)

Accession number	Transposition	Origin	Host
NC_008358	ND	Hyphomonas neptunium	Hyphomonas neptunium ATCC 15444

DNA section

IS Length : 1182 bp

Ends

Left end : GGCGCATCCTTCGACTTCGCTTGTCTTATGGCATTTGCGTCTGATCTGGTCAGACTGGAACCGCTGACGGGAGTTACCGCTCCCGTCAGCGGCGAGGGTG
Right end : CATCATGCGAAAGCTTATCATCCTCGCAAACACACTCATCCGAGAAAATCGGAAATGGACACCAAAACCCAATTGACCAACACGGATACTCAGGATGAGC

Insertion site

Left flank	Direct repeat	Right flank	DR Length
TGTGCTGTTT		GTTGTATGGT	0
GGCGCGCCCC		CCTTCGAGAG	0

DNA sequence

GGCGCATCCTTCGACTTCGCTTGTCTTATGGCATTTGCGTCTGATCTGGTCAGACTGGAACCGCTGACGGGAGTTACCGCTCCCGTCAGCGGCGAGGGTG
GGACCGTGACTTCGCAGGCGCCTGGGCGCCGTTCCTGAGTGAGGTCGCCCTCGTCTTTCCCATCGGCCTGAACGGATACAGGGGCTTTGAGGCCCGCATG
ACAAGCAGAGGCAGGAAAGATGACACTGATTACCATCGGCGTGGATGTTTCAAAAGACACTCTTGATGTCCACCTTCATCCTGACGGGTTGCACCGTCAG
TTCACAAACGATGCCGCCGGCTATCGCACGGTCCTCGGCTGGGTCGCGGGCCGGCCGGTCGCCCGCCTCGTCTTTGAGGCAAGCGGAGCCTACCACCGAG
CCTTTGAGCGCGCGATGGGCGAGGCAGGCCTTGCTCTGTGCAAGGTCAATCCGGCCCGGGCCCGGAGGTTTGCAGAGGCAATTGGCCAGAGCGCCAAGAC
TGACCGGATCGACGCCGCCATGCTGGCCCGGATGGGGGCTGTTCTGGAGCCAGCCGCGCGCGCCGCGCCGTCAAAAACAGCGAGTGATCTCAAAGAGTTG
CACATGATGCGAGCGGCCCTCGTCAAGGACAGGACGGCGGCGAAGAACCGCGCCGGAACGCTCACCCTGCCGCTTTTGAAACGCCAGTTGCGCCAGAGGC
TGGCAGCCATTGACCGCCAGATCACACAGATCGAGCAGGCCATGCAGGCGCTCATCGAGGCTGACCCCGAGCTTGCCCGCAAGCGGGACATCCTCATCTC
GATCCCCGGTATCGCCGAACGCTCTGCCTTTGCCCTCCTGACCGGCATGCCGGAGCTGGGCGACCTCGGTAACCCAGCCGCCAGCGCCCTCTCGGGAACC
GCGCCGCGAACCCGCCAGTCAGGCAAGTGGACCGGCAAGGCGTTCGTGCAGGGCGGCCGCGCCCATGTCCGGCGTTCACTCTATATGCCAGCCCTCGCCG
CCGCCCGGTTCAACCCCGACCTCAATCATACCTACAGGCATCTTACCGGCCGGGGAAAGCCGCCAAAACTTGCCCTCACCGCCATCATGCGAAAGCTTAT
CATCCTCGCAAACACACTCATCCGAGAAAATCGGAAATGGACACCAAAACCCAATTGACCAACACGGATACTCAGGATGAGC

Protein section

ORF number : 1

ORF 1

Length		Begin	End	Strand	Fusion ORF
939 bp	312 aa	220	1158	+	No

ORF function : Transposase
Chemistry : DEDD

ORF sequence :

MTLITIGVDVSKDTLDVHLHPDGLHRQFTNDAAGYRTVLGWVAGRPVARLVFEASGAYHRAFERAMGEAGLALCKVNPARARRFAEAIGQSAKTDRIDAA
MLARMGAVLEPAARAAPSKTASDLKELHMMRAALVKDRTAAKNRAGTLTLPLLKRQLRQRLAAIDRQITQIEQAMQALIEADPELARKRDILISIPGIAE
RSAFALLTGMPELGDLGNPAASALSGTAPRTRQSGKWTGKAFVQGGRAHVRRSLYMPALAAARFNPDLNHTYRHLTGRGKPPKLALTAIMRKLIILANTL
IRENRKWTPKPN

Blast result :

Comments

ISHne5 is 55% aa similar to ISGme8.

References

1] Badger,J.H., Hoover,T.R., Brun,Y.V., Weiner,R.M., Laub,M.T., Alexandre,G., Mrazek,J., Ren,Q., Paulsen,I.T., Nelson,K.E., Khouri,H.M., Radune,D., Sosa,J., Dodson,R.J., Sullivan,S.A., Rosovitz,M.J., Madupu,R., Brinkac,L.M., Durkin,A.S., Daugherty,S.C., Kothari,S.P., Giglio,M.G., Zhou,L., Haft,D.H., Selengut,J.D., Davidsen,T.M., Yang,Q., Zafar,N. and Ward,N.L. (2006) J. Bacteriol. 188 (19), 6841-6850.