ISfinder Mirror Site

ISHne4

Family IS110
Group

MGE type ISRelated element(s) :
Isoform Synonym(s)

Accession number	Transposition	Origin	Host
NC_008358	ND	Hyphomonas neptunium	Hyphomonas neptunium ATCC 15444

DNA section

IS Length : 1166 bp

Ends

Left end : GCCCCACCCTTGTATTGTGATTTTGGTGTAGGGATTGGGTGACAGGCGGGGTCTGTCCCCACCCTTGGTCTTTGAGGACCGCGAGTTAGCGAACGGCCCG
Right end : AACGCCATCCTCCGAGAACAGAGAAACTACCGCCCTGGAATCTGACCCGAACAACAGTTGCTATCCCTCCCCATAGTCATGGGGAGGGGACGTGGTGTGC

Insertion site

Left flank	Direct repeat	Right flank	DR Length
TCCTCCCGCA		AGTTGGAGAG	0

DNA sequence

GCCCCACCCTTGTATTGTGATTTTGGTGTAGGGATTGGGTGACAGGCGGGGTCTGTCCCCACCCTTGGTCTTTGAGGACCGCGAGTTAGCGAACGGCCCG
CCTGTCAGTTTGAGTTCGCCCTGAACAGTTGACAGGGGCGGGTGTTGGAAGCGCCCGGCCCCGCATGACAAGGACAGGAACACCATGCCTCAGAATGTCA
TCGGCGTCGATATTGCCAAAGACTGGATCGACACCCATTGCCTCGACAGCGGCCGATCGGGCCGTCTGGAGATGACGCCCCGCGCCCTGAAAGCCTTTGC
CCGGCGCTGCGGCGGCGCGCTCGTCGTGTTTGAAGCCTCCGGCGGTTATGAGCGCCCGCTTGCTGAGGCGCTGGGCGCGGCTGGCGTCGCCCATGCCCGG
ATCAACCCCCGGCAGGCCCGCGAGTTTGCCCGCGCCACCGGGCGCCTGGCCAAGACCGACCGGGTGGATGCCCAAGTCCTCGCGCGCATGGGCCGGGCGC
TGGAGCTGTCACCGACGCCGCCGCCCGATCCGGCTCGCACCCGGCTGGCGGCGCTGATGGCCCGGCGGGACGATCTCACCGGAGAAGCGGCGCGGGAAGC
CTGCCGCCTGAGGCAGGCACGCGATGCGTTCGTGCGCGCCGACATCACCAGCCTGATCGGGATACTCAAGCGCCGCATTGCCCGGCTTGAGGCGGAGATC
ACTGCCCTGATCAAGGCCCATGCACCTCTGGCCGAGGCCGAAGCGCGCCTGCGATCAGCCCCCGGCATCGGTCCCATCACAGCCGCCAGCCTGATCGCCC
GGCTGCCGGAGCTTGGCCATGTCAGCCGCGGCGCTATCGCCAACCTCGCGGGCCTCGCCCCGCATGCCTGCAACAGCGGGCAGATGCGCGGCCAGCGCCG
CATCTGGGGCGGACGCAAGGACGTGCGCACCAGCCTCTATCAGGCCGCCTTCATCGCCAGCCGCTACGACCCCGCCCTGAAGGCCTTGCGCCAGAGACTG
CAGGACGCCGGAAAACCCTTCAAGGTCGCCATAATCGCCGTCGCCCGCGTCCTTCTCACCCAGCTCAACGCCATCCTCCGAGAACAGAGAAACTACCGCC
CTGGAATCTGACCCGAACAACAGTTGCTATCCCTCCCCATAGTCATGGGGAGGGGACGTGGTGTGC

Protein section

ORF number : 1

ORF 1

Length		Begin	End	Strand	Fusion ORF
927 bp	308 aa	185	1111	+	No

ORF function : Transposase
Chemistry : DEDD

ORF sequence :

MPQNVIGVDIAKDWIDTHCLDSGRSGRLEMTPRALKAFARRCGGALVVFEASGGYERPLAEALGAAGVAHARINPRQAREFARATGRLAKTDRVDAQVLA
RMGRALELSPTPPPDPARTRLAALMARRDDLTGEAAREACRLRQARDAFVRADITSLIGILKRRIARLEAEITALIKAHAPLAEAEARLRSAPGIGPITA
ASLIARLPELGHVSRGAIANLAGLAPHACNSGQMRGQRRIWGGRKDVRTSLYQAAFIASRYDPALKALRQRLQDAGKPFKVAIIAVARVLLTQLNAILRE
QRNYRPGI

Blast result :

Comments

ISHne4 is 59% aa similar to ISBcen8.

References

1]Badger,J.H., Hoover,T.R., Brun,Y.V., Weiner,R.M., Laub,M.T., Alexandre,G., Mrazek,J., Ren,Q., Paulsen,I.T., Nelson,K.E., Khouri,H.M., Radune,D., Sosa,J., Dodson,R.J., Sullivan,S.A., Rosovitz,M.J., Madupu,R., Brinkac,L.M., Durkin,A.S., Daugherty,S.C., Kothari,S.P., Giglio,M.G., Zhou,L., Haft,D.H., Selengut,J.D., Davidsen,T.M., Yang,Q., Zafar,N. and Ward,N.L.J.(2006) Bacteriol. 188 (19), 6841-6850.