ISSsp5
- Family IS21
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AB270530 | ND | Sphingomonas sp. | Sphingomonas sp. KA1 plasmid pCAR3 |
DNA section
IS Length : 2501 bp
Ends
IR Length : 25/30
IRL : TGAGAACGGCGGAGCAATATTCGGCCACGCTAGCGGCGGGATAGTCCTGC
IRR : TGTCAACGGCGGAGCAAAAGTCGGCCATGCGGCGGCGTAAAACCAGGCCA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ATGAGCTTGT | AGAGCAGGCG | 0 |
DNA sequence
TGAGAACGGCGGAGCAATATTCGGCCACGCTAGCGGCGGGATAGTCCTGCTGCGGGCGGCGTAAAAGTCGTCCACCTTGAAGCCTTTCTGCCAAGTCAGG
GAGGTGTGGGGATCTACAGCGTGGAACTTTATCTTCAGGTCCGTTTGGCTTGCGCGGATGGCATGAGCCAGCGGGCGGCGGCGAAGCGTTTCAATGTGTC
GCGCGATACGGTGCGCAAGATGCTGTCGTTTTCATCGCCGCCGGGTTACCGGCGTCAGTCTGCACCGCAGCGCCCGAAGCTGGACGGGTTTGTGGGGATC
ATCGATGGATGGCTTGAGGGGGATCGCGGTGTCCCGCGCAAGCAGCGCCATACGGCGAAGCGGGTATTCGACCGTTTGCGCACCGAGCATGGTTTCACCG
GCGGCTATACGATCATCAAGGATTACATCCGGGAGCGCGAGCAGCGCAGCCGGGAGATGTTCGTGCCGCTGGCGCACCCGGCGGGAGATGCACAGGCCGA
TTTCGGGGAAGCTCTGGTGGAGATCGGCGGGGTGGAGCAAAAAGCCTACTTCTTCGCGCTCGATCTGCCGCACAGTGATGCCTGCTATGTGCGAGCCTAT
CCGGCGGCGGTGGCGGAGGCCTGGGTGGACGGACATGTCCATGCCTTCGCGTTCTTCGGCGCGGTGCCGCGCTCGATCGTCTATGACAACGATCGCTGCC
TTGTGGCGAAAATCCTGCCAGACGGCACGCGCAAGCGTGCCACGCTGTTCAGCGCTTTCCTGTCGCATTACGTGATCCGCGACCGCTATGCCCGCCCGGG
CAAGGGGAACGAGAAAGGCAATGTGGAAGGGCTGGTAGGTTACTGCCGCCGCAATTTCATGGTGCCGATCCCGAAGTTCCCGACCTGGGAGGCCTTCAAC
CTGTGGCTGGAGGAGCAATGCCGCAAGCGCCAGCAGGACAAGGTGCGCGGGGAGAGCGAGACGATCGGTGAGCGCTTGCAGCGCGATCTGGCGGCCATGC
AGCCTCTGCCCGCTACACCCTTCGAGGCCTGCGATCAGACGAGCGGGCGGGTCTCCTCGCAATCTCTGGTGCGCTACAAGACCAACGATTATTCGGTTCC
GGTAGTCTGGGGCCATCAGGAGGTCTGGATCAGGGCCTATGTCGATGAAGTGGTGATCGGATGCCGCAGCGAAGTTATCGCCCGTCATCCTCGTTGCTAT
GCCCGCGAGGAGGTTATCTTCGCCCCGCTCCACTATCTCCCGCTGGTCGAGCAGAAGATCAACGCATTCGACCAGGCCGCCCCTTTGCAGGGCTGGGATT
TGCCCGAAGCGTTCGGGACGCTGCAGCGGTTGATGGAAGGGCGCATGCACAAACATGGCAGGCGCGAATATGTGCAGGTGCTGCGCCTGCTGGAAACGTT
CACCCTCGCCGATCTCCAGGCGGCGGTGGAACAGGCCATCGCCCTTGGCGCCATCGGCTTCGATGCCGTCAAGCACCTCGTCCTGTGCCGGGTCGAACGC
GTACCGCCCAGACTGGACCTGGACATCTATCCCTTCCTGCCTCGCACCACGGTCGAGAAGACCGTTGCCAGAGCCTATCTGAGCCTGCTCTGCGACAGGC
AGGAGGCCGCATGAGCGATCAGGCACCGGAGATTCTTCTCGCTCACCATCTCAAGGCCCTCAAGCTGCCTACGTGCCTGCGAGAGCATCACAAGCTCGCC
CGGCAATGTGCCGCTGAAGGCGTCGATCATATCCGCTTCCTCGCCCGTCTCGTCGAGATGGAGATGATCGACAGGGAGCGTCGTATGGTCGAGCGGCGCA
TCAAGGCCGCGCGCTTCCCCGCCGTCAAAAGCCTCGATAGCTTCGACTTCGCCGTCATCCCCAGGCTCAACAAGATGCAGGTGCTCGAGATGGCGCGCTG
CGAGTGGATCGAGCGGCGTGAGAACGCCATCGCTCTGGGGCCATCGGGCACCGGGAAGACGCACGTAGCTTTGGGGCTCGGACTGGCAGCATGCCAGAAA
GGACTGTCGGTGGGCTTCACCACTGCGGCGGCGCTGGTCAGCGAGATGATGGAGGCGCGCGACGAGCGGCGTCTCCTGCGCTTCCAGAAGCAGATGGCCG
GATACAAGCTGCTCATCATTGACGAACTGGGCTTCGTACCGCTCTCCAAGACCGGTGCCGAACTGTTGTTCGAGCTGATCTCCCAGCGCTATGAGCGCGG
CTCCACCTTGATCACCAGCAACCTGCCCTTCGACGAATGGACCGAAACCTTCGGATCCGAGCGCCTCACAGGCGCGCTCCTCGATCGTCTGACCCATCAC
GTCAGCATCCTCGAGATGAACGGCGAAAGCTATCGCCTCGCTCACAGCCGGGCCCGAAAGGCCAAAACCAGACCCTGAAAATCAAGCCAATGCCGGGGGG
AGTGGCCTTCGGGCTACGCCCTCACGCCACTCCCCCCGGCATGTAACACCGTGGCCTGGTTTTACGCCGCCGCATGGCCGACTTTTGCTCCGCCGTTGAC
A
GAGGTGTGGGGATCTACAGCGTGGAACTTTATCTTCAGGTCCGTTTGGCTTGCGCGGATGGCATGAGCCAGCGGGCGGCGGCGAAGCGTTTCAATGTGTC
GCGCGATACGGTGCGCAAGATGCTGTCGTTTTCATCGCCGCCGGGTTACCGGCGTCAGTCTGCACCGCAGCGCCCGAAGCTGGACGGGTTTGTGGGGATC
ATCGATGGATGGCTTGAGGGGGATCGCGGTGTCCCGCGCAAGCAGCGCCATACGGCGAAGCGGGTATTCGACCGTTTGCGCACCGAGCATGGTTTCACCG
GCGGCTATACGATCATCAAGGATTACATCCGGGAGCGCGAGCAGCGCAGCCGGGAGATGTTCGTGCCGCTGGCGCACCCGGCGGGAGATGCACAGGCCGA
TTTCGGGGAAGCTCTGGTGGAGATCGGCGGGGTGGAGCAAAAAGCCTACTTCTTCGCGCTCGATCTGCCGCACAGTGATGCCTGCTATGTGCGAGCCTAT
CCGGCGGCGGTGGCGGAGGCCTGGGTGGACGGACATGTCCATGCCTTCGCGTTCTTCGGCGCGGTGCCGCGCTCGATCGTCTATGACAACGATCGCTGCC
TTGTGGCGAAAATCCTGCCAGACGGCACGCGCAAGCGTGCCACGCTGTTCAGCGCTTTCCTGTCGCATTACGTGATCCGCGACCGCTATGCCCGCCCGGG
CAAGGGGAACGAGAAAGGCAATGTGGAAGGGCTGGTAGGTTACTGCCGCCGCAATTTCATGGTGCCGATCCCGAAGTTCCCGACCTGGGAGGCCTTCAAC
CTGTGGCTGGAGGAGCAATGCCGCAAGCGCCAGCAGGACAAGGTGCGCGGGGAGAGCGAGACGATCGGTGAGCGCTTGCAGCGCGATCTGGCGGCCATGC
AGCCTCTGCCCGCTACACCCTTCGAGGCCTGCGATCAGACGAGCGGGCGGGTCTCCTCGCAATCTCTGGTGCGCTACAAGACCAACGATTATTCGGTTCC
GGTAGTCTGGGGCCATCAGGAGGTCTGGATCAGGGCCTATGTCGATGAAGTGGTGATCGGATGCCGCAGCGAAGTTATCGCCCGTCATCCTCGTTGCTAT
GCCCGCGAGGAGGTTATCTTCGCCCCGCTCCACTATCTCCCGCTGGTCGAGCAGAAGATCAACGCATTCGACCAGGCCGCCCCTTTGCAGGGCTGGGATT
TGCCCGAAGCGTTCGGGACGCTGCAGCGGTTGATGGAAGGGCGCATGCACAAACATGGCAGGCGCGAATATGTGCAGGTGCTGCGCCTGCTGGAAACGTT
CACCCTCGCCGATCTCCAGGCGGCGGTGGAACAGGCCATCGCCCTTGGCGCCATCGGCTTCGATGCCGTCAAGCACCTCGTCCTGTGCCGGGTCGAACGC
GTACCGCCCAGACTGGACCTGGACATCTATCCCTTCCTGCCTCGCACCACGGTCGAGAAGACCGTTGCCAGAGCCTATCTGAGCCTGCTCTGCGACAGGC
AGGAGGCCGCATGAGCGATCAGGCACCGGAGATTCTTCTCGCTCACCATCTCAAGGCCCTCAAGCTGCCTACGTGCCTGCGAGAGCATCACAAGCTCGCC
CGGCAATGTGCCGCTGAAGGCGTCGATCATATCCGCTTCCTCGCCCGTCTCGTCGAGATGGAGATGATCGACAGGGAGCGTCGTATGGTCGAGCGGCGCA
TCAAGGCCGCGCGCTTCCCCGCCGTCAAAAGCCTCGATAGCTTCGACTTCGCCGTCATCCCCAGGCTCAACAAGATGCAGGTGCTCGAGATGGCGCGCTG
CGAGTGGATCGAGCGGCGTGAGAACGCCATCGCTCTGGGGCCATCGGGCACCGGGAAGACGCACGTAGCTTTGGGGCTCGGACTGGCAGCATGCCAGAAA
GGACTGTCGGTGGGCTTCACCACTGCGGCGGCGCTGGTCAGCGAGATGATGGAGGCGCGCGACGAGCGGCGTCTCCTGCGCTTCCAGAAGCAGATGGCCG
GATACAAGCTGCTCATCATTGACGAACTGGGCTTCGTACCGCTCTCCAAGACCGGTGCCGAACTGTTGTTCGAGCTGATCTCCCAGCGCTATGAGCGCGG
CTCCACCTTGATCACCAGCAACCTGCCCTTCGACGAATGGACCGAAACCTTCGGATCCGAGCGCCTCACAGGCGCGCTCCTCGATCGTCTGACCCATCAC
GTCAGCATCCTCGAGATGAACGGCGAAAGCTATCGCCTCGCTCACAGCCGGGCCCGAAAGGCCAAAACCAGACCCTGAAAATCAAGCCAATGCCGGGGGG
AGTGGCCTTCGGGCTACGCCCTCACGCCACTCCCCCCGGCATGTAACACCGTGGCCTGGTTTTACGCCGCCGCATGGCCGACTTTTGCTCCGCCGTTGAC
A
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1494 bp | 497 aa | 121 | 1614 | + | No |
Chemistry : DDE
ORF sequence :
MELYLQVRLACADGMSQRAAAKRFNVSRDTVRKMLSFSSPPGYRRQSAPQRPKLDGFVGIIDGWLEGDRGVPRKQRHTAKRVFDRLRTEHGFTGGYTIIK
DYIREREQRSREMFVPLAHPAGDAQADFGEALVEIGGVEQKAYFFALDLPHSDACYVRAYPAAVAEAWVDGHVHAFAFFGAVPRSIVYDNDRCLVAKILP
DGTRKRATLFSAFLSHYVIRDRYARPGKGNEKGNVEGLVGYCRRNFMVPIPKFPTWEAFNLWLEEQCRKRQQDKVRGESETIGERLQRDLAAMQPLPATP
FEACDQTSGRVSSQSLVRYKTNDYSVPVVWGHQEVWIRAYVDEVVIGCRSEVIARHPRCYAREEVIFAPLHYLPLVEQKINAFDQAAPLQGWDLPEAFGT
LQRLMEGRMHKHGRREYVQVLRLLETFTLADLQAAVEQAIALGAIGFDAVKHLVLCRVERVPPRLDLDIYPFLPRTTVEKTVARAYLSLLCDRQEAA
DYIREREQRSREMFVPLAHPAGDAQADFGEALVEIGGVEQKAYFFALDLPHSDACYVRAYPAAVAEAWVDGHVHAFAFFGAVPRSIVYDNDRCLVAKILP
DGTRKRATLFSAFLSHYVIRDRYARPGKGNEKGNVEGLVGYCRRNFMVPIPKFPTWEAFNLWLEEQCRKRQQDKVRGESETIGERLQRDLAAMQPLPATP
FEACDQTSGRVSSQSLVRYKTNDYSVPVVWGHQEVWIRAYVDEVVIGCRSEVIARHPRCYAREEVIFAPLHYLPLVEQKINAFDQAAPLQGWDLPEAFGT
LQRLMEGRMHKHGRREYVQVLRLLETFTLADLQAAVEQAIALGAIGFDAVKHLVLCRVERVPPRLDLDIYPFLPRTTVEKTVARAYLSLLCDRQEAA
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
768 bp | 255 aa | 1611 | 2378 | + | No |
AG : IS21 helper
ORF sequence :
MSDQAPEILLAHHLKALKLPTCLREHHKLARQCAAEGVDHIRFLARLVEMEMIDRERRMVERRIKAARFPAVKSLDSFDFAVIPRLNKMQVLEMARCEWI
ERRENAIALGPSGTGKTHVALGLGLAACQKGLSVGFTTAAALVSEMMEARDERRLLRFQKQMAGYKLLIIDELGFVPLSKTGAELLFELISQRYERGSTL
ITSNLPFDEWTETFGSERLTGALLDRLTHHVSILEMNGESYRLAHSRARKAKTRP
ERRENAIALGPSGTGKTHVALGLGLAACQKGLSVGFTTAAALVSEMMEARDERRLLRFQKQMAGYKLLIIDELGFVPLSKTGAELLFELISQRYERGSTL
ITSNLPFDEWTETFGSERLTGALLDRLTHHVSILEMNGESYRLAHSRARKAKTRP
Blast result :
Comments
ISSsp5 is 67%(istA) and 80%(istB) aa similar to ISFlsp1.
L1 : GGCGGCGTAAAAGTCG
R1 : GGCGGAGCAAAAGTCG
R2 : GGCGGCGTAAAA
L1 : GGCGGCGTAAAAGTCG
R1 : GGCGGAGCAAAAGTCG
R2 : GGCGGCGTAAAA
References
1] Habe,H., Ashikawa,Y., Saiki,Y., Yoshida,T., Nojiri,H. and Omori,T.(2002) FEMS Microbiol. Lett. 211 (1), 43-49.
2] Inoue,K., Widada,J., Nakai,S., Endoh,T., Urata,M., Ashikawa,Y., Shintani,M., Saiki,Y., Yoshida,T., Habe,H., Omori,T. and Nojiri,H.(2004)Biosci. Biotechnol. Biochem. 68 (7), 1467-1480.
3] Inoue,K., Habe,H., Yamane,H., Omori,T. and Nojiri,H.(2005)FEMS Microbiol. Lett. 245 (1), 145-153.
4] Urata,M., Uchimura,H., Noguchi,H., Sakaguchi,T., Takemura,T., Eto,K., Habe,H., Omori,T., Yamane,H. and Nojiri,H.(2006)Appl. Environ. Microbiol. 72 (5), 3198-3205.
5] Shintani,M., Urata,M., Inoue,K., Eto,K., Habe,H., Omori,T., Yamane,H. and Nojiri,H.(2007)J. Bacteriol. 189 (5), 2007-2020.
2] Inoue,K., Widada,J., Nakai,S., Endoh,T., Urata,M., Ashikawa,Y., Shintani,M., Saiki,Y., Yoshida,T., Habe,H., Omori,T. and Nojiri,H.(2004)Biosci. Biotechnol. Biochem. 68 (7), 1467-1480.
3] Inoue,K., Habe,H., Yamane,H., Omori,T. and Nojiri,H.(2005)FEMS Microbiol. Lett. 245 (1), 145-153.
4] Urata,M., Uchimura,H., Noguchi,H., Sakaguchi,T., Takemura,T., Eto,K., Habe,H., Omori,T., Yamane,H. and Nojiri,H.(2006)Appl. Environ. Microbiol. 72 (5), 3198-3205.
5] Shintani,M., Urata,M., Inoue,K., Eto,K., Habe,H., Omori,T., Yamane,H. and Nojiri,H.(2007)J. Bacteriol. 189 (5), 2007-2020.