ISHne2
- Family IS481
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_008358 | ND | Hyphomonas neptunium | Hyphomonas neptunium ATCC 15444 |
DNA section
IS Length : 1316 bp
Ends
IR Length : 35/43
IRL : TGGTCCAATCCGGTAAGATGGGTAACAAAACAGACCGGGGACATGGGTAA
IRR : TGTGCAACCGGGGACATAGGTAACATTTGAGACCGGGGAGATGGGTTACA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GAGGATAACG | GCT | TCGCCGGATG | 3 |
GAGGGTTGGG | GTG | GGGTGGCTCT | 3 |
GAGGGGGCCT | TTGCTTTGTG | 0 | |
GAGGATAAGG | GCG | TGCGCTGAAG | 3 |
DNA sequence
TGGTCCAATCCGGTAAGATGGGTAACAAAACAGACCGGGGACATGGGTAACAGATTTGCGAGGATGACCATCTGGAGGAGATGGTCATGGGTTGGAGGCG
GACAGATCCGATGAACGAGCGTGTTGAGTTCATCGCGGCGTGGCTGAAGGGTGAGGACAGTGTGACAGGGCTGTCTGTGCGGTTCGATATATCGCGCAAG
ACGGCCTACAAATGGATTGAGCGTTACAAGGCTGCGGGGCCAGCGGGGCTTTATGATGTGTCTCGAGCCCCGCTTTGCCCGGCGGGCGGCACGCCACCGG
AGCTGGCGTCCCGTGTGGTGACGCTCCGGCGGGCGCATCCTGCCTGGGGGCCGCGCAAGTTGAAGGCGCGTCTGGAGATGGATGATCCGGGTGTTGCCTG
GCCAGCGGCTTCGACGATCGGTGACATTCTCAAGCGCGAAGGGCTTGTATCTCCGCGGCGGTTTCGCCGGCGCGCGGCGCCGATGACAACGCCCTTTGCG
CAGGCGCATGCCCCCAACGATGTCTGGTGCATGGACTTCAAGGGCTGGTGGCGTACGGGCGATGGCCAACGCTGTGAGCCGTTCACGGTCTCGGACGCCC
TGAGCCGGTATCTTCTGGTCTGCCAGCCTGTCGCGCGCACGGGCTATGATACGGTCTGGCCGGTACTGGCAAAGGCGTTCCGGGACCACGGCCTGCCGCG
CGCCATCCGGTCAGACAATGGTCCGCCTTTCGGGTCTGTGGCGGCCGGGGGCCTGTCCCGTCTGGCGGTCAACTTTGTGAAGATGGGCATCTTCCCGGAA
CGGATCACCCCTGGAAAGCCGCAGGAGAATGGGCGCCATGAGCGTCTGCATCTGACCCTGAAGCGCGAAGCGGCCGATCCGGTCTCCCGCACACTTCGGG
CGCAGGCCGCGCGCCTTGTCCGGTTCCGGAAATCCTACAATCATGAGCGTCCGCATGAGGCGCTCGGCCAGAAACCCCCGGCGGCGGTCTATGTGCCAAG
CCCGCGCGTATGGGACGGCAAGCTTCGCGCCCCGGACTATCCTGGCGCCACCGAAACCCGCGCGGTCAGGCACGCCGGCACCATTAGATGGCGCGGCGCG
GAACCCTTCATCTCCGAAGTGCTGATCGGGGAGCGCGTTGGCCTCTTCCGGACCGGCGAAGACCAATACGACGTCTACTTCGGCCCCATCCTCCTCGGAC
ACATCGACCCGAAAAAACGCATGAACCGCATCAAGCCTGGCAGACCACGGAACATACCATGAAAACTGTAACCCATCTCCCCGGTCTCAAATGTTACCTA
TGTCCCCGGTTGCACA
GACAGATCCGATGAACGAGCGTGTTGAGTTCATCGCGGCGTGGCTGAAGGGTGAGGACAGTGTGACAGGGCTGTCTGTGCGGTTCGATATATCGCGCAAG
ACGGCCTACAAATGGATTGAGCGTTACAAGGCTGCGGGGCCAGCGGGGCTTTATGATGTGTCTCGAGCCCCGCTTTGCCCGGCGGGCGGCACGCCACCGG
AGCTGGCGTCCCGTGTGGTGACGCTCCGGCGGGCGCATCCTGCCTGGGGGCCGCGCAAGTTGAAGGCGCGTCTGGAGATGGATGATCCGGGTGTTGCCTG
GCCAGCGGCTTCGACGATCGGTGACATTCTCAAGCGCGAAGGGCTTGTATCTCCGCGGCGGTTTCGCCGGCGCGCGGCGCCGATGACAACGCCCTTTGCG
CAGGCGCATGCCCCCAACGATGTCTGGTGCATGGACTTCAAGGGCTGGTGGCGTACGGGCGATGGCCAACGCTGTGAGCCGTTCACGGTCTCGGACGCCC
TGAGCCGGTATCTTCTGGTCTGCCAGCCTGTCGCGCGCACGGGCTATGATACGGTCTGGCCGGTACTGGCAAAGGCGTTCCGGGACCACGGCCTGCCGCG
CGCCATCCGGTCAGACAATGGTCCGCCTTTCGGGTCTGTGGCGGCCGGGGGCCTGTCCCGTCTGGCGGTCAACTTTGTGAAGATGGGCATCTTCCCGGAA
CGGATCACCCCTGGAAAGCCGCAGGAGAATGGGCGCCATGAGCGTCTGCATCTGACCCTGAAGCGCGAAGCGGCCGATCCGGTCTCCCGCACACTTCGGG
CGCAGGCCGCGCGCCTTGTCCGGTTCCGGAAATCCTACAATCATGAGCGTCCGCATGAGGCGCTCGGCCAGAAACCCCCGGCGGCGGTCTATGTGCCAAG
CCCGCGCGTATGGGACGGCAAGCTTCGCGCCCCGGACTATCCTGGCGCCACCGAAACCCGCGCGGTCAGGCACGCCGGCACCATTAGATGGCGCGGCGCG
GAACCCTTCATCTCCGAAGTGCTGATCGGGGAGCGCGTTGGCCTCTTCCGGACCGGCGAAGACCAATACGACGTCTACTTCGGCCCCATCCTCCTCGGAC
ACATCGACCCGAAAAAACGCATGAACCGCATCAAGCCTGGCAGACCACGGAACATACCATGAAAACTGTAACCCATCTCCCCGGTCTCAAATGTTACCTA
TGTCCCCGGTTGCACA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1176 bp | 391 aa | 87 | 1262 | + | No |
Chemistry : DDE
ORF sequence :
MGWRRTDPMNERVEFIAAWLKGEDSVTGLSVRFDISRKTAYKWIERYKAAGPAGLYDVSRAPLCPAGGTPPELASRVVTLRRAHPAWGPRKLKARLEMDD
PGVAWPAASTIGDILKREGLVSPRRFRRRAAPMTTPFAQAHAPNDVWCMDFKGWWRTGDGQRCEPFTVSDALSRYLLVCQPVARTGYDTVWPVLAKAFRD
HGLPRAIRSDNGPPFGSVAAGGLSRLAVNFVKMGIFPERITPGKPQENGRHERLHLTLKREAADPVSRTLRAQAARLVRFRKSYNHERPHEALGQKPPAA
VYVPSPRVWDGKLRAPDYPGATETRAVRHAGTIRWRGAEPFISEVLIGERVGLFRTGEDQYDVYFGPILLGHIDPKKRMNRIKPGRPRNIP
PGVAWPAASTIGDILKREGLVSPRRFRRRAAPMTTPFAQAHAPNDVWCMDFKGWWRTGDGQRCEPFTVSDALSRYLLVCQPVARTGYDTVWPVLAKAFRD
HGLPRAIRSDNGPPFGSVAAGGLSRLAVNFVKMGIFPERITPGKPQENGRHERLHLTLKREAADPVSRTLRAQAARLVRFRKSYNHERPHEALGQKPPAA
VYVPSPRVWDGKLRAPDYPGATETRAVRHAGTIRWRGAEPFISEVLIGERVGLFRTGEDQYDVYFGPILLGHIDPKKRMNRIKPGRPRNIP
Blast result :
Comments
ISHne2 is 49% aa similar to ISBxe3.
References
1] Badger,J.H., Hoover,T.R., Brun,Y.V., Weiner,R.M., Laub,M.T., Alexandre,G., Mrazek,J., Ren,Q., Paulsen,I.T., Nelson,K.E., Khouri,H.M., Radune,D., Sosa,J., Dodson,R.J., Sullivan,S.A., Rosovitz,M.J., Madupu,R., Brinkac,L.M., Durkin,A.S., Daugherty,S.C., Kothari,S.P., Giglio,M.G., Zhou,L., Haft,D.H., Selengut,J.D., Davidsen,T.M., Yang,Q., Zafar,N. and Ward,N.L. (2006) J. Bacteriol. 188 (19), 6841-6850.