ISHne2

  • Family IS481
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_008358 ND Hyphomonas neptunium
Hyphomonas neptunium ATCC 15444
DNA section
IS Length : 1316 bp

Ends


IR Length : 35/43

IRL : TGGTCCAATCCGGTAAGATGGGTAACAAAACAGACCGGGGACATGGGTAA
IRR : TGTGCAACCGGGGACATAGGTAACATTTGAGACCGGGGAGATGGGTTACA

Insertion site


Left flankDirect repeatRight flankDR Length
GAGGATAACGGCTTCGCCGGATG3
GAGGGTTGGGGTGGGGTGGCTCT3
GAGGGGGCCTTTGCTTTGTG0
GAGGATAAGGGCGTGCGCTGAAG3

DNA sequence

TGGTCCAATCCGGTAAGATGGGTAACAAAACAGACCGGGGACATGGGTAACAGATTTGCGAGGATGACCATCTGGAGGAGATGGTCATGGGTTGGAGGCG
GACAGATCCGATGAACGAGCGTGTTGAGTTCATCGCGGCGTGGCTGAAGGGTGAGGACAGTGTGACAGGGCTGTCTGTGCGGTTCGATATATCGCGCAAG
ACGGCCTACAAATGGATTGAGCGTTACAAGGCTGCGGGGCCAGCGGGGCTTTATGATGTGTCTCGAGCCCCGCTTTGCCCGGCGGGCGGCACGCCACCGG
AGCTGGCGTCCCGTGTGGTGACGCTCCGGCGGGCGCATCCTGCCTGGGGGCCGCGCAAGTTGAAGGCGCGTCTGGAGATGGATGATCCGGGTGTTGCCTG
GCCAGCGGCTTCGACGATCGGTGACATTCTCAAGCGCGAAGGGCTTGTATCTCCGCGGCGGTTTCGCCGGCGCGCGGCGCCGATGACAACGCCCTTTGCG
CAGGCGCATGCCCCCAACGATGTCTGGTGCATGGACTTCAAGGGCTGGTGGCGTACGGGCGATGGCCAACGCTGTGAGCCGTTCACGGTCTCGGACGCCC
TGAGCCGGTATCTTCTGGTCTGCCAGCCTGTCGCGCGCACGGGCTATGATACGGTCTGGCCGGTACTGGCAAAGGCGTTCCGGGACCACGGCCTGCCGCG
CGCCATCCGGTCAGACAATGGTCCGCCTTTCGGGTCTGTGGCGGCCGGGGGCCTGTCCCGTCTGGCGGTCAACTTTGTGAAGATGGGCATCTTCCCGGAA
CGGATCACCCCTGGAAAGCCGCAGGAGAATGGGCGCCATGAGCGTCTGCATCTGACCCTGAAGCGCGAAGCGGCCGATCCGGTCTCCCGCACACTTCGGG
CGCAGGCCGCGCGCCTTGTCCGGTTCCGGAAATCCTACAATCATGAGCGTCCGCATGAGGCGCTCGGCCAGAAACCCCCGGCGGCGGTCTATGTGCCAAG
CCCGCGCGTATGGGACGGCAAGCTTCGCGCCCCGGACTATCCTGGCGCCACCGAAACCCGCGCGGTCAGGCACGCCGGCACCATTAGATGGCGCGGCGCG
GAACCCTTCATCTCCGAAGTGCTGATCGGGGAGCGCGTTGGCCTCTTCCGGACCGGCGAAGACCAATACGACGTCTACTTCGGCCCCATCCTCCTCGGAC
ACATCGACCCGAAAAAACGCATGAACCGCATCAAGCCTGGCAGACCACGGAACATACCATGAAAACTGTAACCCATCTCCCCGGTCTCAAATGTTACCTA
TGTCCCCGGTTGCACA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1176 bp391 aa871262+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MGWRRTDPMNERVEFIAAWLKGEDSVTGLSVRFDISRKTAYKWIERYKAAGPAGLYDVSRAPLCPAGGTPPELASRVVTLRRAHPAWGPRKLKARLEMDD
PGVAWPAASTIGDILKREGLVSPRRFRRRAAPMTTPFAQAHAPNDVWCMDFKGWWRTGDGQRCEPFTVSDALSRYLLVCQPVARTGYDTVWPVLAKAFRD
HGLPRAIRSDNGPPFGSVAAGGLSRLAVNFVKMGIFPERITPGKPQENGRHERLHLTLKREAADPVSRTLRAQAARLVRFRKSYNHERPHEALGQKPPAA
VYVPSPRVWDGKLRAPDYPGATETRAVRHAGTIRWRGAEPFISEVLIGERVGLFRTGEDQYDVYFGPILLGHIDPKKRMNRIKPGRPRNIP

 

Blast result :
Comments
ISHne2 is 49% aa similar to ISBxe3.
References
1] Badger,J.H., Hoover,T.R., Brun,Y.V., Weiner,R.M., Laub,M.T., Alexandre,G., Mrazek,J., Ren,Q., Paulsen,I.T., Nelson,K.E., Khouri,H.M., Radune,D., Sosa,J., Dodson,R.J., Sullivan,S.A., Rosovitz,M.J., Madupu,R., Brinkac,L.M., Durkin,A.S., Daugherty,S.C., Kothari,S.P., Giglio,M.G., Zhou,L., Haft,D.H., Selengut,J.D., Davidsen,T.M., Yang,Q., Zafar,N. and Ward,N.L. (2006) J. Bacteriol. 188 (19), 6841-6850.