ISTde2

  • Family IS30
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_002967 ND Treponema denticola
Treponema denticola ATCC 35405
DNA section
IS Length : 1228 bp

Ends


IR Length : 24/32

IRL : GGTAAGTTGTAAAATAAATTGCCCTAAAAATAAATAAAAAAGGTTCATCT
IRR : TATAAATTGTAAGAGGTATTGCCCAAAAAATACCATTTTTATGAAATTCA

Insertion site


Left flankDirect repeatRight flankDR Length
GTTCGTATAACAAATATTTGTATTTTTGTCCGCC14
GATGTGTCAAGTACGCTGAAAAGGCAAAGAGTACT15
TGTGTAAAATCACAGACATAATTATTTATCAGGCC15

DNA sequence

GGTAAGTTGTAAAATAAATTGCCCTAAAAATAAATAAAAAAGGTTCATCTGAACCAAAAAACCATTATAATGAAATTAGGAAAAACAAAGATAATGGGGA
ACAGATGAACCAGAAGAATGATACCATAAAAAGTAAAAAATGGAAACACCTTAGCGAAAAAGAAAGATATGCGATAGAAGCATTATTCAAAAGCGACTAT
AATGCAAGGCAAATTGCACAGTCTTTAAATAGGGATAGAAGAACGATACAGAGGGAGATAAAAAGGGGAATGGTAATAAAAGTAACAGAAAATCCATATG
TAAGCCGTAATCCAAAAGTTCCTGACTATCTTGAAAAGACAGTTTACTCGGCACGAAAAGGACAACAAAGAGCCGATAAAATGAAATTACTAAAAGGCCG
TGGTTTAAAAATAGGTAAGGATAAAAAACTTTTACATTATTTGGAAACATGTATAGCGGATAATAAATTTTCTCCTGATGCCGCTATAGGACAAATAAAA
GAACTAGGCTTACAGTTTCCGGTTATGATATGCACCAAAACTGTATACAATATGATAGACAGAGGGGATTTTTCTAGGCTTACAAACAAAGATTTACCTG
TAAAACGCAATAAAACTAAACGAAAATATAAAAAAATAAGCAAAATTGCTAAAAACAACATAAAAGGACGCAGTATTGAACAAAGAAGTGAACAGATAAA
TAAAAGACAGGAAAAAGGACATTGGGAAATGGATTTGGTGATAGGTAAAGGAAGATGCTGCTTACAAGTTATGACTGAAAGAGTTACTAGAAAAGAATTA
ATATTTAAAATCCCCGATAAAAAACAGGAAAGTATTAAAAAAAATATAGATATGCTTGAGATGAAATATAAAGATGAGTTTAAAGAAATATTTAAAAGCA
TAACCATGGATAACGGGACTGAATTTTTAGACCAAGAAGGCCTTGAAACCTCTTGTTTAAAAGAAGGAGAAAAAAGGACAACTTGTTATTATGCACATCC
TTATAGTTCTTGGGAAAGAGGAAGCAATGAGAATGCTAATAAATTAATTAGACGCTTTATACCAAAAGGAGCAGATATAAGTAAATATAGTGACATACAA
ATAAAACAAGTAGAGAATTGGATAAATAATTATCCTAGACGGATGTTTGGCTATAAAACGGCCAATCAAATGTATACATGAATTTCATAAAAATGGTATT
TTTTGGGCAATACCTCTTACAATTTATA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1077 bp358 aa1051181+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MNQKNDTIKSKKWKHLSEKERYAIEALFKSDYNARQIAQSLNRDRRTIQREIKRGMVIKVTENPYVSRNPKVPDYLEKTVYSARKGQQRADKMKLLKGRG
LKIGKDKKLLHYLETCIADNKFSPDAAIGQIKELGLQFPVMICTKTVYNMIDRGDFSRLTNKDLPVKRNKTKRKYKKISKIAKNNIKGRSIEQRSEQINK
RQEKGHWEMDLVIGKGRCCLQVMTERVTRKELIFKIPDKKQESIKKNIDMLEMKYKDEFKEIFKSITMDNGTEFLDQEGLETSCLKEGEKRTTCYYAHPY
SSWERGSNENANKLIRRFIPKGADISKYSDIQIKQVENWINNYPRRMFGYKTANQMYT

 

Blast result :
Comments
There are 3 copies of ISTde2 in Treponema denticola ATCC 35405. ISTde2 is 53% aa similar to ISL7.
References
1] Seshadri,R., Myers,G.S., Tettelin,H., Eisen,J.A., Heidelberg,J.F., Dodson,R.J., Davidsen,T.M., DeBoy,R.T., Fouts,D.E., Haft,D.H., Selengut,J., Ren,Q., Brinkac,L.M., Madupu,R., Kolonay,J., Durkin,S.A., Daugherty,S.C., Shetty,J., Shvartsbeyn,A., Gebregeorgis,E., Geer,K., Tsegaye,G., Malek,J., Ayodeji,B., Shatsman,S., McLeod,M.P., Smajs,D., Howell,J.K., Pal,S., Amin,A., Vashisth,P., McNeill,T.Z., Xiang,Q., Sodergren,E., Baca,E., Weinstock,G.M., Norris,S.J., Fraser,C.M. and Paulsen,I.T. (2004) Proc. Natl. Acad. Sci. U.S.A. 101 (15), 5646-5651