ISVvu5

  • Family IS5
  • Group IS903
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
BA000038 ND Vibrio vulnificus
Vibrio vulnificus YJ016
DNA section
IS Length : 1054 bp

Ends


IR Length : 20

IRL : GGCTTTGTTGCGTAATTCGAGGGAACTAAATCAGAAGGTTACGATCTGAT
IRR : GGCTTTGTTGCGTAATTCGATCAGAGAACCAAACTGCCTGCAATTGATTG

Insertion site


Left flankDirect repeatRight flankDR Length
CCCTTCCTGCTCTCCAACGGT0

DNA sequence

GGCTTTGTTGCGTAATTCGAGGGAACTAAATCAGAAGGTTACGATCTGATCGGTTAAGTAAGTTAATTCCCCTAGTCTCATGCCGAAACCTCACTACAAA
ACAACGAACTGGAAACAGTACAACAAAGCCTTAATCAACCGTGGTTCACTCACTTTCTGGATTGATGAAGAAGCCATTCGCCAGTGGAAGCAGAGTAAAC
AAGATAAACGTGGTAGACCTCGTCAGTTCAGCGACTTAGCCATTACCACTGCGCTTATGGTGAAACGAGTTTTCTCAATGCCGTTGAGAGCATTGCAAGG
GTTTATCGATTCTGTTTTTTCATTGGCTAACGTCCCTATAGTCTGCCCACATTACAGTTGTATCAGTCGAAGAGCTAAGCAAGTCGAGGTTTCATTTAAA
CCAAAGACTAGAGGTGCAATACAGCATCTAGCCATTGATGCGACGGGTCTCAAGGTTTATGGCGAAGGTGAATGGAAGGTCAAGAAGCATGGTACTGACG
GGAAGCGTAGAGTCTGGAGAAAGTTGCATTTAGCGTTAGACACCAGAACTCACGAAATCGTCGCGGCAGAACTGAGTTTATCTAATGTTACCGATGCAGA
AGTCCTTCCTAACTTGCTCAAGCAAACACGGCGAAGGATTCTCGAGATATCTGGTGATGGCGCTTATGACACAAGGGGTTGCCACGATGCAATACGGTTC
AAACGAGCTGTTCCACTCATCCCCCCAGGAGAAGGGGCAGCCTTCTGGGAGAATGGGCACCCTAGGAATTTAGCAGTAGGTTGCCAGAAGCTCTACGGCT
CCAACAATAAGTGGAAAAAACGGTACGGCTATCATAAACGCTCACTATCAGAGACAGCAATGTATCGAGTGAAGCAGTTGTTAGGTGGGCGATTAAGTCT
AAGAAACTACAATGCTCAGGTTGGTGAAACTTACGCCATGATTAAAGCGCTGAACAAACTTACAGGGCTTGGTATGCCTAAAACTCAGTGTGTTGTATAA
GAATCAATCAATTGCAGGCAGTTTGGTTCTCTGATCGAATTACGCAACAAAGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
921 bp306 aa801000+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MPKPHYKTTNWKQYNKALINRGSLTFWIDEEAIRQWKQSKQDKRGRPRQFSDLAITTALMVKRVFSMPLRALQGFIDSVFSLANVPIVCPHYSCISRRAK
QVEVSFKPKTRGAIQHLAIDATGLKVYGEGEWKVKKHGTDGKRRVWRKLHLALDTRTHEIVAAELSLSNVTDAEVLPNLLKQTRRRILEISGDGAYDTRG
CHDAIRFKRAVPLIPPGEGAAFWENGHPRNLAVGCQKLYGSNNKWKKRYGYHKRSLSETAMYRVKQLLGGRLSLRNYNAQVGETYAMIKALNKLTGLGMP
KTQCVV

 

Blast result :
Comments
ISVvu5 is 98% aa similar to ISVpa3.
References
1] Chen,C.Y., Wu,K.M., Chang,Y.C., Chang,C.H., Tsai,H.C., Liao,T.L., Liu,Y.M., Chen,H.J., Shen,A.B., Li,J.C., Su,T.L., Shao,C.P., Lee,C.T., Hor,L.I. and Tsai,S.F. (2003) Genome Res. 13 (12), 2577-2587