ISVvu5
- Family IS5
- Group IS903
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
BA000038 | ND | Vibrio vulnificus | Vibrio vulnificus YJ016 |
DNA section
IS Length : 1054 bp
Ends
IR Length : 20
IRL : GGCTTTGTTGCGTAATTCGAGGGAACTAAATCAGAAGGTTACGATCTGAT
IRR : GGCTTTGTTGCGTAATTCGATCAGAGAACCAAACTGCCTGCAATTGATTG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CCCTTCCTGC | TCTCCAACGGT | 0 |
DNA sequence
GGCTTTGTTGCGTAATTCGAGGGAACTAAATCAGAAGGTTACGATCTGATCGGTTAAGTAAGTTAATTCCCCTAGTCTCATGCCGAAACCTCACTACAAA
ACAACGAACTGGAAACAGTACAACAAAGCCTTAATCAACCGTGGTTCACTCACTTTCTGGATTGATGAAGAAGCCATTCGCCAGTGGAAGCAGAGTAAAC
AAGATAAACGTGGTAGACCTCGTCAGTTCAGCGACTTAGCCATTACCACTGCGCTTATGGTGAAACGAGTTTTCTCAATGCCGTTGAGAGCATTGCAAGG
GTTTATCGATTCTGTTTTTTCATTGGCTAACGTCCCTATAGTCTGCCCACATTACAGTTGTATCAGTCGAAGAGCTAAGCAAGTCGAGGTTTCATTTAAA
CCAAAGACTAGAGGTGCAATACAGCATCTAGCCATTGATGCGACGGGTCTCAAGGTTTATGGCGAAGGTGAATGGAAGGTCAAGAAGCATGGTACTGACG
GGAAGCGTAGAGTCTGGAGAAAGTTGCATTTAGCGTTAGACACCAGAACTCACGAAATCGTCGCGGCAGAACTGAGTTTATCTAATGTTACCGATGCAGA
AGTCCTTCCTAACTTGCTCAAGCAAACACGGCGAAGGATTCTCGAGATATCTGGTGATGGCGCTTATGACACAAGGGGTTGCCACGATGCAATACGGTTC
AAACGAGCTGTTCCACTCATCCCCCCAGGAGAAGGGGCAGCCTTCTGGGAGAATGGGCACCCTAGGAATTTAGCAGTAGGTTGCCAGAAGCTCTACGGCT
CCAACAATAAGTGGAAAAAACGGTACGGCTATCATAAACGCTCACTATCAGAGACAGCAATGTATCGAGTGAAGCAGTTGTTAGGTGGGCGATTAAGTCT
AAGAAACTACAATGCTCAGGTTGGTGAAACTTACGCCATGATTAAAGCGCTGAACAAACTTACAGGGCTTGGTATGCCTAAAACTCAGTGTGTTGTATAA
GAATCAATCAATTGCAGGCAGTTTGGTTCTCTGATCGAATTACGCAACAAAGCC
ACAACGAACTGGAAACAGTACAACAAAGCCTTAATCAACCGTGGTTCACTCACTTTCTGGATTGATGAAGAAGCCATTCGCCAGTGGAAGCAGAGTAAAC
AAGATAAACGTGGTAGACCTCGTCAGTTCAGCGACTTAGCCATTACCACTGCGCTTATGGTGAAACGAGTTTTCTCAATGCCGTTGAGAGCATTGCAAGG
GTTTATCGATTCTGTTTTTTCATTGGCTAACGTCCCTATAGTCTGCCCACATTACAGTTGTATCAGTCGAAGAGCTAAGCAAGTCGAGGTTTCATTTAAA
CCAAAGACTAGAGGTGCAATACAGCATCTAGCCATTGATGCGACGGGTCTCAAGGTTTATGGCGAAGGTGAATGGAAGGTCAAGAAGCATGGTACTGACG
GGAAGCGTAGAGTCTGGAGAAAGTTGCATTTAGCGTTAGACACCAGAACTCACGAAATCGTCGCGGCAGAACTGAGTTTATCTAATGTTACCGATGCAGA
AGTCCTTCCTAACTTGCTCAAGCAAACACGGCGAAGGATTCTCGAGATATCTGGTGATGGCGCTTATGACACAAGGGGTTGCCACGATGCAATACGGTTC
AAACGAGCTGTTCCACTCATCCCCCCAGGAGAAGGGGCAGCCTTCTGGGAGAATGGGCACCCTAGGAATTTAGCAGTAGGTTGCCAGAAGCTCTACGGCT
CCAACAATAAGTGGAAAAAACGGTACGGCTATCATAAACGCTCACTATCAGAGACAGCAATGTATCGAGTGAAGCAGTTGTTAGGTGGGCGATTAAGTCT
AAGAAACTACAATGCTCAGGTTGGTGAAACTTACGCCATGATTAAAGCGCTGAACAAACTTACAGGGCTTGGTATGCCTAAAACTCAGTGTGTTGTATAA
GAATCAATCAATTGCAGGCAGTTTGGTTCTCTGATCGAATTACGCAACAAAGCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
921 bp | 306 aa | 80 | 1000 | + | No |
Chemistry : DDE
ORF sequence :
MPKPHYKTTNWKQYNKALINRGSLTFWIDEEAIRQWKQSKQDKRGRPRQFSDLAITTALMVKRVFSMPLRALQGFIDSVFSLANVPIVCPHYSCISRRAK
QVEVSFKPKTRGAIQHLAIDATGLKVYGEGEWKVKKHGTDGKRRVWRKLHLALDTRTHEIVAAELSLSNVTDAEVLPNLLKQTRRRILEISGDGAYDTRG
CHDAIRFKRAVPLIPPGEGAAFWENGHPRNLAVGCQKLYGSNNKWKKRYGYHKRSLSETAMYRVKQLLGGRLSLRNYNAQVGETYAMIKALNKLTGLGMP
KTQCVV
QVEVSFKPKTRGAIQHLAIDATGLKVYGEGEWKVKKHGTDGKRRVWRKLHLALDTRTHEIVAAELSLSNVTDAEVLPNLLKQTRRRILEISGDGAYDTRG
CHDAIRFKRAVPLIPPGEGAAFWENGHPRNLAVGCQKLYGSNNKWKKRYGYHKRSLSETAMYRVKQLLGGRLSLRNYNAQVGETYAMIKALNKLTGLGMP
KTQCVV
Blast result :
Comments
ISVvu5 is 98% aa similar to ISVpa3.
References
1] Chen,C.Y., Wu,K.M., Chang,Y.C., Chang,C.H., Tsai,H.C., Liao,T.L., Liu,Y.M., Chen,H.J., Shen,A.B., Li,J.C., Su,T.L., Shao,C.P., Lee,C.T., Hor,L.I. and Tsai,S.F. (2003) Genome Res. 13 (12), 2577-2587