ISDvu4
- Family IS481
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_002937 | ND | Desulfovibrio vulgaris | Desulfovibrio vulgaris subsp. vulgaris Hildenborough Desulfovibrio vulgaris subsp. vulgaris DP4 |
DNA section
IS Length : 1220 bp
Ends
IR Length : 23/32
IRL : TGTGCTGAGCTAGTTATTACCTGACAGTAGGCCCTTCAAAAGGAAGTGGT
IRR : TGTACAGAGATAGTATTCACCTGACACTTGCCGTACCCGGCTGGGGCGCT
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| GATCAAGACC | GACTGCA | AGCGGTCATA | 7 |
| TTGCGAGAGA | TTGCTCAGTG | 0 |
DNA sequence
TGTGCTGAGCTAGTTATTACCTGACAGTAGGCCCTTCAAAAGGAAGTGGTCATGCCGTTCCCGACTGGGGTAGCGATGAGGTTGCGAAGCTTCATCAACC
ACCAGCAAGGAATCCGACATGACCACAGGCAAGAAGGTAGCACGAAGGAAGTTGAGCCTGCTAGAGCTTGCAAGCGAACTCGACAACGTGAGCAAGGCGT
GCCGCATCATGGGGTATTCGCGGCAGCAGTTCTATGAAATCCGCCGTAATTACCAGACGTTTGGCGCAGAAGGGCTTGTGGACCGCCTGCCGGGGCCACG
AGAACCACACCCGAACCGGGTGGACGAGGCGACAGAGGATAGGATTTTGGCGTACAGCCTTGAATTTCCGACGCATGGCCCCGTCCGCGTGGCCCAACAG
TTGGTTTTGCAAGGTGTTCAGGTCAGTTCCGGGGGCGTGCGGGGTGTCTGGAGCCGCAACGGGATGCTGACCCGACATGAACGGCTGCTGCGCCTGGAGC
GGCATGTGCGTGATACCGGAATCGCCCTGAATGACGACCAGGTTCGCACCTTGGAGCGATTCAGCCCGGAATTCCGGGAGCGCCATATCGAAACCCGGTG
CAGCGGCGATCTGGTGGCCGTGGATACGTTTTTCGTAGGCACGCTGAAGGGCGTGGGGAAAATCTATCTGCAATCGGCCATCGACTGCCACAGCCGCTAC
GCCTTCGGCAGACTGTACACCAGCAAGCTGCCGGTTACGGCGGTACACATGCTCAACGAGTCCGTGCTGCCCTTTTTCGAGGAGCACGACACGCCGGTCG
TCACAGTGCTTTCGGATAATGGCCGGGAATTCTGCGGGCGTCCTGACAGACACCCCTACGAACTATTCCTGCAACTGGAAAATATCGAGCACCGGACAAC
CCGCGTCAGACGTCCGCAAAGCAACGGCTTTGTGGAGCGGCTGCACAGGACATTGCTCGACGAGCATTTCAGGATTCAGGGGCGAAAAAACTGGTATGAG
TCTCTGGATGAAATGCAGGCAGACCTTGACGCCTACTTGCGCCACTATAACCACGAGCGGGCACACCAAGGCAGAAACATGAGCGGCCGGACACCCTATC
AAGCCTTCCTTGATAGCCGTCCCGAAGGGCAGCCGAAAGAAGACAACGAAGGACACTACGCAGCCTGATCAGCGCCCCAGCCGGGTACGGCAAGTGTCAG
GTGAATACTATCTCTGTACA
ACCAGCAAGGAATCCGACATGACCACAGGCAAGAAGGTAGCACGAAGGAAGTTGAGCCTGCTAGAGCTTGCAAGCGAACTCGACAACGTGAGCAAGGCGT
GCCGCATCATGGGGTATTCGCGGCAGCAGTTCTATGAAATCCGCCGTAATTACCAGACGTTTGGCGCAGAAGGGCTTGTGGACCGCCTGCCGGGGCCACG
AGAACCACACCCGAACCGGGTGGACGAGGCGACAGAGGATAGGATTTTGGCGTACAGCCTTGAATTTCCGACGCATGGCCCCGTCCGCGTGGCCCAACAG
TTGGTTTTGCAAGGTGTTCAGGTCAGTTCCGGGGGCGTGCGGGGTGTCTGGAGCCGCAACGGGATGCTGACCCGACATGAACGGCTGCTGCGCCTGGAGC
GGCATGTGCGTGATACCGGAATCGCCCTGAATGACGACCAGGTTCGCACCTTGGAGCGATTCAGCCCGGAATTCCGGGAGCGCCATATCGAAACCCGGTG
CAGCGGCGATCTGGTGGCCGTGGATACGTTTTTCGTAGGCACGCTGAAGGGCGTGGGGAAAATCTATCTGCAATCGGCCATCGACTGCCACAGCCGCTAC
GCCTTCGGCAGACTGTACACCAGCAAGCTGCCGGTTACGGCGGTACACATGCTCAACGAGTCCGTGCTGCCCTTTTTCGAGGAGCACGACACGCCGGTCG
TCACAGTGCTTTCGGATAATGGCCGGGAATTCTGCGGGCGTCCTGACAGACACCCCTACGAACTATTCCTGCAACTGGAAAATATCGAGCACCGGACAAC
CCGCGTCAGACGTCCGCAAAGCAACGGCTTTGTGGAGCGGCTGCACAGGACATTGCTCGACGAGCATTTCAGGATTCAGGGGCGAAAAAACTGGTATGAG
TCTCTGGATGAAATGCAGGCAGACCTTGACGCCTACTTGCGCCACTATAACCACGAGCGGGCACACCAAGGCAGAAACATGAGCGGCCGGACACCCTATC
AAGCCTTCCTTGATAGCCGTCCCGAAGGGCAGCCGAAAGAAGACAACGAAGGACACTACGCAGCCTGATCAGCGCCCCAGCCGGGTACGGCAAGTGTCAG
GTGAATACTATCTCTGTACA
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1050 bp | 349 aa | 119 | 1168 | + | No |
Chemistry : DDE
ORF sequence :
MTTGKKVARRKLSLLELASELDNVSKACRIMGYSRQQFYEIRRNYQTFGAEGLVDRLPGPREPHPNRVDEATEDRILAYSLEFPTHGPVRVAQQLVLQGV
QVSSGGVRGVWSRNGMLTRHERLLRLERHVRDTGIALNDDQVRTLERFSPEFRERHIETRCSGDLVAVDTFFVGTLKGVGKIYLQSAIDCHSRYAFGRLY
TSKLPVTAVHMLNESVLPFFEEHDTPVVTVLSDNGREFCGRPDRHPYELFLQLENIEHRTTRVRRPQSNGFVERLHRTLLDEHFRIQGRKNWYESLDEMQ
ADLDAYLRHYNHERAHQGRNMSGRTPYQAFLDSRPEGQPKEDNEGHYAA
QVSSGGVRGVWSRNGMLTRHERLLRLERHVRDTGIALNDDQVRTLERFSPEFRERHIETRCSGDLVAVDTFFVGTLKGVGKIYLQSAIDCHSRYAFGRLY
TSKLPVTAVHMLNESVLPFFEEHDTPVVTVLSDNGREFCGRPDRHPYELFLQLENIEHRTTRVRRPQSNGFVERLHRTLLDEHFRIQGRKNWYESLDEMQ
ADLDAYLRHYNHERAHQGRNMSGRTPYQAFLDSRPEGQPKEDNEGHYAA
Blast result :
Comments
ISDvu4 is 65% aa similar to ISCce1.
References
1] Heidelberg,J.F., Seshadri,R., Haveman,S.A., Hemme,C.L., Paulsen,I.T., Kolonay,J.F., Eisen,J.A., Ward,N., Methe,B., Brinkac,L.M., Daugherty,S.C., Deboy,R.T., Dodson,R.J., Durkin,A.S., Madupu,R., Nelson,W.C., Sullivan,S.A., Fouts,D., Haft,D.H., Selengut,J., Peterson,J.D., Davidsen,T.M., Zafar,N., Zhou,L., Radune,D., Dimitrov,G., Hance,M., Tran,K., Khouri,H., Gill,J., Utterback,T.R., Feldblyum,T.V., Wall,J.D., Voordouw,G. and Fraser,C.M. (2004) Nat. Biotechnol. 22 (5), 554-559.