ISRta3
- Family IS110
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Ralstonia taiwanensis | Ralstonia taiwanensis LMG19424 |
DNA section
IS Length : 1574 bp
Ends
Left end : GGTTGGGTGCTGTTGGTGACATGCTGTCGGCTTTTGAACCGCCTGGTTCCGCCCTGCTGGGCGGGTCACTTTTTGGCCGAGCGCCAAAAAGATGGAATGA
Right end : AAGTCTGCAGCCAATCCTGTCCCGCCTGATGTTGGCGTTATCTTGCAAACCGGGCGCGTTCATATAAGTAACCAAAAAACGCGTCGCCTGTGCGGCTGGC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GTGTGTTGAGGGTTATTC | AATCAATTCCACGGCGTT | 0 |
DNA sequence
GGTTGGGTGCTGTTGGTGACATGCTGTCGGCTTTTGAACCGCCTGGTTCCGCCCTGCTGGGCGGGTCACTTTTTGGCCGAGCGCCAAAAAGATGGAATGA
ACGCGCCCCGGCCCGCTCCGATTAAAGGCGCCGGCAATTCAAGTTGTGACATCTGGGGAACGTGAAGGGTAGGCGGGTCCCCCCATCACGAAACGGCATC
GATGTGCCAGAGTGGGAGTGTGAGCAACCACGCGAGGATGGAGGGACCCGAGATGAATACTACGACTTACGGCCTCGACATTGCAAAGACTGTCTTCCAG
CTCTATTGGGTCGAGCCTTCCGGCAAGTGTTGCAACCGCCGCTTCAACCGTACGAAGCTGATCGAGTTCCTGGCCAAGCGCGAGCCGGGACGGGTAGCGC
TGGAAGCGTGCGCGAGCGCGCATTGGTGGGCGCGTCAGTTGCAGGGCTTGGGCCACAAGCCGGTGCTGCTGCACGCGCGCTATGTGCGCCCGTTCGTGCA
GACCAATAAAACCGATGCGGCCGATGCGAAGGCAATCTGGACTGCAGCGCAACAGCCGGGCATGCGCGAGGTGGCGCCAAAGTCCGAAACCCAGCAGTGC
GTGCTGGCGGTGCATGCCATGCGTTCGCTGCGCATCAAGATGCGAACGATGCTGGTCAACCAGTTGCGAGGCATGCTGGTTGAATTCGGCATCCACTTCC
GACGCGGCCGCCAGGCCGGGCTCGACGAGATCGTGCAACGTCTGCCGGAGATCGAGTCTCGCGTACCGCCGACGCTGTTCGAGGCCGTACATCAGCAGTT
GCGCAGCCTGGAGAGTCTGGACCGTGAGATTGCCGAGTACGACCGTCAGATCACTGCCTGGGGTCGTCAGGATCGCGCCTGTCAGACTATCAGCGCCATC
CCTGGCATAGGGATGCTCACTGCCACGGCCTTGGTGGCGACGATCGGTGAAGCGCGCACGTTCAAGTCCGGGCGGCAGCTGGCGGCATTCCTGGGTCTAG
TGCCCAAGCAGACCGGTACCGGCGGCAAGGTCCGACTGGGTGGCATCAGCAAACGCGGCAATCCCTACCTGCGCACCTTGCTCATCCACGGCGCACGGAC
GGTGCTGAGCCATCTGCGACGCAAGAACCAGGGTGGCTGGAGCCAGGCATTGGCCCAGAAACGCCCCACTAACGTCGTGGCGGTTGCCATGGCCAACAAG
ACGGTACGCACGGTCTGGGCGCTGTTGGCCCACGAGCGGACCTATGACCGAGACTACGTCTCGGTCAGGCCTGCCTGATGGCAGGCTGAGCAAGCAAGGA
AGAATCCGTCCACAGGTTGCGACGGTAATGTCAGCGTGATGGCAAAACAGGTTGGACCGCGGGAGTGCAAGCCCAATTGGTTACTGGTGCGGCAAGCACG
GCAAAAAGATAGGGACACTCCCGGCGAAATCCATCAGGGCCCGCAGGCGTGGCCTGCACCGCAAGGCCGGATATAAGTCTGCAGCCAATCCTGTCCCGCC
TGATGTTGGCGTTATCTTGCAAACCGGGCGCGTTCATATAAGTAACCAAAAAACGCGTCGCCTGTGCGGCTGGC
ACGCGCCCCGGCCCGCTCCGATTAAAGGCGCCGGCAATTCAAGTTGTGACATCTGGGGAACGTGAAGGGTAGGCGGGTCCCCCCATCACGAAACGGCATC
GATGTGCCAGAGTGGGAGTGTGAGCAACCACGCGAGGATGGAGGGACCCGAGATGAATACTACGACTTACGGCCTCGACATTGCAAAGACTGTCTTCCAG
CTCTATTGGGTCGAGCCTTCCGGCAAGTGTTGCAACCGCCGCTTCAACCGTACGAAGCTGATCGAGTTCCTGGCCAAGCGCGAGCCGGGACGGGTAGCGC
TGGAAGCGTGCGCGAGCGCGCATTGGTGGGCGCGTCAGTTGCAGGGCTTGGGCCACAAGCCGGTGCTGCTGCACGCGCGCTATGTGCGCCCGTTCGTGCA
GACCAATAAAACCGATGCGGCCGATGCGAAGGCAATCTGGACTGCAGCGCAACAGCCGGGCATGCGCGAGGTGGCGCCAAAGTCCGAAACCCAGCAGTGC
GTGCTGGCGGTGCATGCCATGCGTTCGCTGCGCATCAAGATGCGAACGATGCTGGTCAACCAGTTGCGAGGCATGCTGGTTGAATTCGGCATCCACTTCC
GACGCGGCCGCCAGGCCGGGCTCGACGAGATCGTGCAACGTCTGCCGGAGATCGAGTCTCGCGTACCGCCGACGCTGTTCGAGGCCGTACATCAGCAGTT
GCGCAGCCTGGAGAGTCTGGACCGTGAGATTGCCGAGTACGACCGTCAGATCACTGCCTGGGGTCGTCAGGATCGCGCCTGTCAGACTATCAGCGCCATC
CCTGGCATAGGGATGCTCACTGCCACGGCCTTGGTGGCGACGATCGGTGAAGCGCGCACGTTCAAGTCCGGGCGGCAGCTGGCGGCATTCCTGGGTCTAG
TGCCCAAGCAGACCGGTACCGGCGGCAAGGTCCGACTGGGTGGCATCAGCAAACGCGGCAATCCCTACCTGCGCACCTTGCTCATCCACGGCGCACGGAC
GGTGCTGAGCCATCTGCGACGCAAGAACCAGGGTGGCTGGAGCCAGGCATTGGCCCAGAAACGCCCCACTAACGTCGTGGCGGTTGCCATGGCCAACAAG
ACGGTACGCACGGTCTGGGCGCTGTTGGCCCACGAGCGGACCTATGACCGAGACTACGTCTCGGTCAGGCCTGCCTGATGGCAGGCTGAGCAAGCAAGGA
AGAATCCGTCCACAGGTTGCGACGGTAATGTCAGCGTGATGGCAAAACAGGTTGGACCGCGGGAGTGCAAGCCCAATTGGTTACTGGTGCGGCAAGCACG
GCAAAAAGATAGGGACACTCCCGGCGAAATCCATCAGGGCCCGCAGGCGTGGCCTGCACCGCAAGGCCGGATATAAGTCTGCAGCCAATCCTGTCCCGCC
TGATGTTGGCGTTATCTTGCAAACCGGGCGCGTTCATATAAGTAACCAAAAAACGCGTCGCCTGTGCGGCTGGC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1077 bp | 358 aa | 202 | 1278 | + | No |
Chemistry : DEDD
ORF sequence :
MCQSGSVSNHARMEGPEMNTTTYGLDIAKTVFQLYWVEPSGKCCNRRFNRTKLIEFLAKREPGRVALEACASAHWWARQLQGLGHKPVLLHARYVRPFVQ
TNKTDAADAKAIWTAAQQPGMREVAPKSETQQCVLAVHAMRSLRIKMRTMLVNQLRGMLVEFGIHFRRGRQAGLDEIVQRLPEIESRVPPTLFEAVHQQL
RSLESLDREIAEYDRQITAWGRQDRACQTISAIPGIGMLTATALVATIGEARTFKSGRQLAAFLGLVPKQTGTGGKVRLGGISKRGNPYLRTLLIHGART
VLSHLRRKNQGGWSQALAQKRPTNVVAVAMANKTVRTVWALLAHERTYDRDYVSVRPA
TNKTDAADAKAIWTAAQQPGMREVAPKSETQQCVLAVHAMRSLRIKMRTMLVNQLRGMLVEFGIHFRRGRQAGLDEIVQRLPEIESRVPPTLFEAVHQQL
RSLESLDREIAEYDRQITAWGRQDRACQTISAIPGIGMLTATALVATIGEARTFKSGRQLAAFLGLVPKQTGTGGKVRLGGISKRGNPYLRTLLIHGART
VLSHLRRKNQGGWSQALAQKRPTNVVAVAMANKTVRTVWALLAHERTYDRDYVSVRPA
Blast result :
Comments
ISRta3 is 71% aa similar to ISAfe1.
References
1] Boivin (2008) Direct submission.