ISRta3

  • Family IS110
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Ralstonia taiwanensis
Ralstonia taiwanensis LMG19424
DNA section
IS Length : 1574 bp

Ends


Left end : GGTTGGGTGCTGTTGGTGACATGCTGTCGGCTTTTGAACCGCCTGGTTCCGCCCTGCTGGGCGGGTCACTTTTTGGCCGAGCGCCAAAAAGATGGAATGA
Right end : AAGTCTGCAGCCAATCCTGTCCCGCCTGATGTTGGCGTTATCTTGCAAACCGGGCGCGTTCATATAAGTAACCAAAAAACGCGTCGCCTGTGCGGCTGGC

Insertion site


Left flankDirect repeatRight flankDR Length
GTGTGTTGAGGGTTATTCAATCAATTCCACGGCGTT0

DNA sequence

GGTTGGGTGCTGTTGGTGACATGCTGTCGGCTTTTGAACCGCCTGGTTCCGCCCTGCTGGGCGGGTCACTTTTTGGCCGAGCGCCAAAAAGATGGAATGA
ACGCGCCCCGGCCCGCTCCGATTAAAGGCGCCGGCAATTCAAGTTGTGACATCTGGGGAACGTGAAGGGTAGGCGGGTCCCCCCATCACGAAACGGCATC
GATGTGCCAGAGTGGGAGTGTGAGCAACCACGCGAGGATGGAGGGACCCGAGATGAATACTACGACTTACGGCCTCGACATTGCAAAGACTGTCTTCCAG
CTCTATTGGGTCGAGCCTTCCGGCAAGTGTTGCAACCGCCGCTTCAACCGTACGAAGCTGATCGAGTTCCTGGCCAAGCGCGAGCCGGGACGGGTAGCGC
TGGAAGCGTGCGCGAGCGCGCATTGGTGGGCGCGTCAGTTGCAGGGCTTGGGCCACAAGCCGGTGCTGCTGCACGCGCGCTATGTGCGCCCGTTCGTGCA
GACCAATAAAACCGATGCGGCCGATGCGAAGGCAATCTGGACTGCAGCGCAACAGCCGGGCATGCGCGAGGTGGCGCCAAAGTCCGAAACCCAGCAGTGC
GTGCTGGCGGTGCATGCCATGCGTTCGCTGCGCATCAAGATGCGAACGATGCTGGTCAACCAGTTGCGAGGCATGCTGGTTGAATTCGGCATCCACTTCC
GACGCGGCCGCCAGGCCGGGCTCGACGAGATCGTGCAACGTCTGCCGGAGATCGAGTCTCGCGTACCGCCGACGCTGTTCGAGGCCGTACATCAGCAGTT
GCGCAGCCTGGAGAGTCTGGACCGTGAGATTGCCGAGTACGACCGTCAGATCACTGCCTGGGGTCGTCAGGATCGCGCCTGTCAGACTATCAGCGCCATC
CCTGGCATAGGGATGCTCACTGCCACGGCCTTGGTGGCGACGATCGGTGAAGCGCGCACGTTCAAGTCCGGGCGGCAGCTGGCGGCATTCCTGGGTCTAG
TGCCCAAGCAGACCGGTACCGGCGGCAAGGTCCGACTGGGTGGCATCAGCAAACGCGGCAATCCCTACCTGCGCACCTTGCTCATCCACGGCGCACGGAC
GGTGCTGAGCCATCTGCGACGCAAGAACCAGGGTGGCTGGAGCCAGGCATTGGCCCAGAAACGCCCCACTAACGTCGTGGCGGTTGCCATGGCCAACAAG
ACGGTACGCACGGTCTGGGCGCTGTTGGCCCACGAGCGGACCTATGACCGAGACTACGTCTCGGTCAGGCCTGCCTGATGGCAGGCTGAGCAAGCAAGGA
AGAATCCGTCCACAGGTTGCGACGGTAATGTCAGCGTGATGGCAAAACAGGTTGGACCGCGGGAGTGCAAGCCCAATTGGTTACTGGTGCGGCAAGCACG
GCAAAAAGATAGGGACACTCCCGGCGAAATCCATCAGGGCCCGCAGGCGTGGCCTGCACCGCAAGGCCGGATATAAGTCTGCAGCCAATCCTGTCCCGCC
TGATGTTGGCGTTATCTTGCAAACCGGGCGCGTTCATATAAGTAACCAAAAAACGCGTCGCCTGTGCGGCTGGC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1077 bp358 aa2021278+No
ORF function : Transposase
Chemistry : DEDD

ORF sequence :

MCQSGSVSNHARMEGPEMNTTTYGLDIAKTVFQLYWVEPSGKCCNRRFNRTKLIEFLAKREPGRVALEACASAHWWARQLQGLGHKPVLLHARYVRPFVQ
TNKTDAADAKAIWTAAQQPGMREVAPKSETQQCVLAVHAMRSLRIKMRTMLVNQLRGMLVEFGIHFRRGRQAGLDEIVQRLPEIESRVPPTLFEAVHQQL
RSLESLDREIAEYDRQITAWGRQDRACQTISAIPGIGMLTATALVATIGEARTFKSGRQLAAFLGLVPKQTGTGGKVRLGGISKRGNPYLRTLLIHGART
VLSHLRRKNQGGWSQALAQKRPTNVVAVAMANKTVRTVWALLAHERTYDRDYVSVRPA

 

Blast result :
Comments
ISRta3 is 71% aa similar to ISAfe1.
References
1] Boivin (2008) Direct submission.