ISRta2

  • Family IS256
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Ralstonia taiwanensis
Ralstonia taiwanensis LMG19424
DNA section
IS Length : 1386 bp

Ends


IR Length : 25/31

IRL : GGGACCTGTCAGAAATTTTGTGTTTAGGGCATAACATGTCGCCAAGGAGC
IRR : GGGCCTGTCAGTTTTTTTGTGTGCAGGGCAGGTAAAGGCTCACCGTCGAT

Insertion site


Left flankDirect repeatRight flankDR Length
TCCGATAGCCGAAGGCCCGGAGGTTCCGGG7

DNA sequence

GGGACCTGTCAGAAATTTTGTGTTTAGGGCATAACATGTCGCCAAGGAGCATGTATGCCACGCAAAACCAAGACCAGCCAGGCCGCCGACCGTGAGCTGC
CGACCATTCCCGAGGACCTGATTGCCCATTTCGTTAAGGGTCCGATGACCGCCGAGGCGGTGCAGGACGCCTCGATGGCGTTCAAGAAGGCCCTGATCGA
GCGCGCCCTGGGGGCCGAGCTCGGCCATCATCTGGGCTACCCGGCTGGCGCCGAGCGCCCGGCCGGCACGGCCAACCAGCGCAATGGCAAGAGCGCCAAG
ACGGTTCTGACCGACGACGGGCCGCTGCGGTTAGACATCCCTCGCGATCGCGACGGCAGCTTTGATCCGATCCTGATTCCCAAGCACGAGCGGCGCTTCA
CCGGGTTCGACGACAAGATCATCGCCATGTATGCGCGCGGCATGACCTTGCGCGAGATCCAGGCGTTTCTGGCCGAACAGTACGGCACCGAGGTCTCGCC
CGAGTTCATCAGTTCGGTGACCGATGCGGTCATGGACGAGGTCACCGCCTGGCAGGCCCGTCCGCTGGAGGTGATGTACCCGGTGGTGTTCTTCGACGCG
CTGCGGGTCAAGATGCGCGAGGACGGCGTGGTGCGCAACAAGGCCGTCTACCTGGCCTTGGGCGTGCTGCCCGACGGCACGCGCGACATCCTGGGCCTGT
GGATCGAGACTACCGAAGGCGCCAAGTTCTGGATGAAGGTGTTCAACGACCTGAAGACCCGGGGTACCCAAGACATCCTGATCGCGGTGACCGATGGCCT
TAAGGGCATGGAACAGGCCCTGGCCGCGGTGTTCCCGAACACCACCCTGCAGACCTGCATCGTGCATCTGATCCGCAACAGCCTGGAGTACGCCAACTGG
AAGGAGCGCCGCGCCGTGGCGGCGGCGCTCAAGCCCGTGTACACGGCCCCCACGGTCGAGGCCGCGCTGGCCGAGTTGGCGGCCTTCGAGAACGGGGAAT
GGGGTCGGCGGTATGCACCGATCGGCGCATCCTGGCGTCGCGCCTGGGATCAGGTGATCCCGTTCTTTACGTTCCCGCCGGCGATCCGCAAGATCATTTA
CACGACCAACGCGATCGAGAGCATCAACGCGCAGCTGCGCAAGATCATCAAGACGCGCGGTCACTTCCCCAGCGACGAGGCGGCGACCAAGCTGCTGTGG
CTGGCGCTGCGAAACATCACGGTGAAGTGGGGCAGTTCAACCCATGACTGGAAGGCTGCCATGAACCAGTTTGCGATCCTCTACGAGGAACGCTTCACCC
ACCCTTATCGTTAAGATATTGCTGGCTCACCGTTCCATCGACGGTGAGCCTTTACCTGCCCTGCACACAAAAAAACTGACAGGCCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1260 bp419 aa551314+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MPRKTKTSLAADRELPTIPEDLIAHFVKGPMTAEAVQDASMAFKKALIERALGAELGHHLGYPPGAERPAGTANQRNGKSAKTVLTEDGPLRVDIPRDRD
GSFDPILIPKHERRFTGFDDKIIAMYARGMTVREIQAFLAEQYGTEVSPEFISSVTDAVMDEVTTWQARPLEVMYPVVFFDALRVKMREDGVVRNKAVYL
ALGVLPDGTRDILGLWIENTEGAKFWMKVFNDLKTRGTQDILIAVTDGLKGMEQALNAVFPHTTLQTCIVHLIRNSLEYVSWKERREVAAALKPVYTAPT
VEAALAELAAFEQGKWGQQYKPIAASWHRAWDQVIPFFTFPPAIRKIIYTTNAIESINAQLRKIIKTRGHFPSDEAATKLLWLALRNITGKWGSSTHDWK
AAMNQFAILYEERFAHPHR

 

Blast result :
Comments
ISRta2 is 88% aa similar to ISPsy17.
References
1] Boivin (2008) Direct submission.