ISRta2
- Family IS256
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Ralstonia taiwanensis | Ralstonia taiwanensis LMG19424 |
DNA section
IS Length : 1386 bp
Ends
IR Length : 25/31
IRL : GGGACCTGTCAGAAATTTTGTGTTTAGGGCATAACATGTCGCCAAGGAGC
IRR : GGGCCTGTCAGTTTTTTTGTGTGCAGGGCAGGTAAAGGCTCACCGTCGAT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TCCGATAGCCG | AAGGCCC | GGAGGTTCCGGG | 7 |
DNA sequence
GGGACCTGTCAGAAATTTTGTGTTTAGGGCATAACATGTCGCCAAGGAGCATGTATGCCACGCAAAACCAAGACCAGCCAGGCCGCCGACCGTGAGCTGC
CGACCATTCCCGAGGACCTGATTGCCCATTTCGTTAAGGGTCCGATGACCGCCGAGGCGGTGCAGGACGCCTCGATGGCGTTCAAGAAGGCCCTGATCGA
GCGCGCCCTGGGGGCCGAGCTCGGCCATCATCTGGGCTACCCGGCTGGCGCCGAGCGCCCGGCCGGCACGGCCAACCAGCGCAATGGCAAGAGCGCCAAG
ACGGTTCTGACCGACGACGGGCCGCTGCGGTTAGACATCCCTCGCGATCGCGACGGCAGCTTTGATCCGATCCTGATTCCCAAGCACGAGCGGCGCTTCA
CCGGGTTCGACGACAAGATCATCGCCATGTATGCGCGCGGCATGACCTTGCGCGAGATCCAGGCGTTTCTGGCCGAACAGTACGGCACCGAGGTCTCGCC
CGAGTTCATCAGTTCGGTGACCGATGCGGTCATGGACGAGGTCACCGCCTGGCAGGCCCGTCCGCTGGAGGTGATGTACCCGGTGGTGTTCTTCGACGCG
CTGCGGGTCAAGATGCGCGAGGACGGCGTGGTGCGCAACAAGGCCGTCTACCTGGCCTTGGGCGTGCTGCCCGACGGCACGCGCGACATCCTGGGCCTGT
GGATCGAGACTACCGAAGGCGCCAAGTTCTGGATGAAGGTGTTCAACGACCTGAAGACCCGGGGTACCCAAGACATCCTGATCGCGGTGACCGATGGCCT
TAAGGGCATGGAACAGGCCCTGGCCGCGGTGTTCCCGAACACCACCCTGCAGACCTGCATCGTGCATCTGATCCGCAACAGCCTGGAGTACGCCAACTGG
AAGGAGCGCCGCGCCGTGGCGGCGGCGCTCAAGCCCGTGTACACGGCCCCCACGGTCGAGGCCGCGCTGGCCGAGTTGGCGGCCTTCGAGAACGGGGAAT
GGGGTCGGCGGTATGCACCGATCGGCGCATCCTGGCGTCGCGCCTGGGATCAGGTGATCCCGTTCTTTACGTTCCCGCCGGCGATCCGCAAGATCATTTA
CACGACCAACGCGATCGAGAGCATCAACGCGCAGCTGCGCAAGATCATCAAGACGCGCGGTCACTTCCCCAGCGACGAGGCGGCGACCAAGCTGCTGTGG
CTGGCGCTGCGAAACATCACGGTGAAGTGGGGCAGTTCAACCCATGACTGGAAGGCTGCCATGAACCAGTTTGCGATCCTCTACGAGGAACGCTTCACCC
ACCCTTATCGTTAAGATATTGCTGGCTCACCGTTCCATCGACGGTGAGCCTTTACCTGCCCTGCACACAAAAAAACTGACAGGCCC
CGACCATTCCCGAGGACCTGATTGCCCATTTCGTTAAGGGTCCGATGACCGCCGAGGCGGTGCAGGACGCCTCGATGGCGTTCAAGAAGGCCCTGATCGA
GCGCGCCCTGGGGGCCGAGCTCGGCCATCATCTGGGCTACCCGGCTGGCGCCGAGCGCCCGGCCGGCACGGCCAACCAGCGCAATGGCAAGAGCGCCAAG
ACGGTTCTGACCGACGACGGGCCGCTGCGGTTAGACATCCCTCGCGATCGCGACGGCAGCTTTGATCCGATCCTGATTCCCAAGCACGAGCGGCGCTTCA
CCGGGTTCGACGACAAGATCATCGCCATGTATGCGCGCGGCATGACCTTGCGCGAGATCCAGGCGTTTCTGGCCGAACAGTACGGCACCGAGGTCTCGCC
CGAGTTCATCAGTTCGGTGACCGATGCGGTCATGGACGAGGTCACCGCCTGGCAGGCCCGTCCGCTGGAGGTGATGTACCCGGTGGTGTTCTTCGACGCG
CTGCGGGTCAAGATGCGCGAGGACGGCGTGGTGCGCAACAAGGCCGTCTACCTGGCCTTGGGCGTGCTGCCCGACGGCACGCGCGACATCCTGGGCCTGT
GGATCGAGACTACCGAAGGCGCCAAGTTCTGGATGAAGGTGTTCAACGACCTGAAGACCCGGGGTACCCAAGACATCCTGATCGCGGTGACCGATGGCCT
TAAGGGCATGGAACAGGCCCTGGCCGCGGTGTTCCCGAACACCACCCTGCAGACCTGCATCGTGCATCTGATCCGCAACAGCCTGGAGTACGCCAACTGG
AAGGAGCGCCGCGCCGTGGCGGCGGCGCTCAAGCCCGTGTACACGGCCCCCACGGTCGAGGCCGCGCTGGCCGAGTTGGCGGCCTTCGAGAACGGGGAAT
GGGGTCGGCGGTATGCACCGATCGGCGCATCCTGGCGTCGCGCCTGGGATCAGGTGATCCCGTTCTTTACGTTCCCGCCGGCGATCCGCAAGATCATTTA
CACGACCAACGCGATCGAGAGCATCAACGCGCAGCTGCGCAAGATCATCAAGACGCGCGGTCACTTCCCCAGCGACGAGGCGGCGACCAAGCTGCTGTGG
CTGGCGCTGCGAAACATCACGGTGAAGTGGGGCAGTTCAACCCATGACTGGAAGGCTGCCATGAACCAGTTTGCGATCCTCTACGAGGAACGCTTCACCC
ACCCTTATCGTTAAGATATTGCTGGCTCACCGTTCCATCGACGGTGAGCCTTTACCTGCCCTGCACACAAAAAAACTGACAGGCCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1260 bp | 419 aa | 55 | 1314 | + | No |
Chemistry : DDE
ORF sequence :
MPRKTKTSLAADRELPTIPEDLIAHFVKGPMTAEAVQDASMAFKKALIERALGAELGHHLGYPPGAERPAGTANQRNGKSAKTVLTEDGPLRVDIPRDRD
GSFDPILIPKHERRFTGFDDKIIAMYARGMTVREIQAFLAEQYGTEVSPEFISSVTDAVMDEVTTWQARPLEVMYPVVFFDALRVKMREDGVVRNKAVYL
ALGVLPDGTRDILGLWIENTEGAKFWMKVFNDLKTRGTQDILIAVTDGLKGMEQALNAVFPHTTLQTCIVHLIRNSLEYVSWKERREVAAALKPVYTAPT
VEAALAELAAFEQGKWGQQYKPIAASWHRAWDQVIPFFTFPPAIRKIIYTTNAIESINAQLRKIIKTRGHFPSDEAATKLLWLALRNITGKWGSSTHDWK
AAMNQFAILYEERFAHPHR
GSFDPILIPKHERRFTGFDDKIIAMYARGMTVREIQAFLAEQYGTEVSPEFISSVTDAVMDEVTTWQARPLEVMYPVVFFDALRVKMREDGVVRNKAVYL
ALGVLPDGTRDILGLWIENTEGAKFWMKVFNDLKTRGTQDILIAVTDGLKGMEQALNAVFPHTTLQTCIVHLIRNSLEYVSWKERREVAAALKPVYTAPT
VEAALAELAAFEQGKWGQQYKPIAASWHRAWDQVIPFFTFPPAIRKIIYTTNAIESINAQLRKIIKTRGHFPSDEAATKLLWLALRNITGKWGSSTHDWK
AAMNQFAILYEERFAHPHR
Blast result :
Comments
ISRta2 is 88% aa similar to ISPsy17.
References
1] Boivin (2008) Direct submission.