ISRta1
- Family ISL3
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Ralstonia taiwanensis | Ralstonia taiwanensis LMG19424 |
DNA section
IS Length : 1303 bp
Ends
IR Length : 16/22
IRL : GGTTCTTCGCAGAAAACCGTGGCCCGAAAGAGCACATTTTGTATGCTGAT
IRR : GGTTCATCGAGGAATTCCGGGGAAGGCTGCGCGGATTTTGAGGAAGAAGT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TAGCGTTGGC | TAATTTTT | TCCATCGGCA | 8 |
DNA sequence
GGTTCTTCGCAGAAAACCGTGGCCCGAAAGAGCACATTTTGTATGCTGATGTCTGTTTCTTCAGGTATCAGGGGGATGTGTGCTGGATCGCAAGACGCTG
CAAGCACTGGGTTGCTGGAAGGGCTACCGGCTGGAGCGCGTGGAATGGCCGGAGGGAGAGAGCCGTACGCTGTCGTTGTACTTGAAGCCGGTCAGCAAGG
TCATGCATTGCGAGGAGTGTGGCGCGCGCTGCCATCAGGTGCATGAGACAGTGGTCAGGCGAGTCCGGGACCTTCCGCTGTTCGAGTATCGGGTCGTACT
GCACGTGCCGCGCCGGCGCGTTTGGTGCGACCGTTGCGGCGGTCCGAGGCTGGAGCGGCTGGAATGGCTTGGGCGCTACCAACGCGTGACGGCCCGCTTG
GCCCAGGCTTGCGGCCACTTGTTGCGCCACTGTACGGTGCAGGCGGTGGCGGCCTTCTACGATCTGGGCTGGCACACAGTTAAATCGATCGATAAGGCTC
GCTTGCGTGAGGCAGTGGCCGAGCCGGACTGGTCCAATATCCGCTACCTGGCCATGGATGAGTTCGCGCTACACAAGGGGCATCGATATGCCACGGTGGT
AGTCGACCCCATTGGGCGGCAGGTGCTCTGGATCGGACAGGGGCGCTCACGCGAGACCGCCCGAGCCTTCTTTGAGCAGCTCCCCGCCGGCGTTGCGCAG
CGCATCGAGGCCGTCGCCATCGACATGACGACCGCGTATGAGTTGGAGATCCGGGCGCATTGCCCGCAAGCAGAGGTGGTCTTCGACCTGTTCCACGTGG
TAGCTAAGTACGGGCGTGAGGTCATCGACCGAGTACGGGTGGATCAGGCCAATCAGCTGCGGCACGATCGGCCGGCCAGACGGGTGCTCAAGTCCACACG
CTGGCTACTGCTGCGGAATCGGGAGAACTTGAGCGTCCCCCAGGCGGTTCATCTGGATGAGGTCCTGGAGGCGAACCGGCCATTGCTGACAGTCTATCTG
TTGCGCGACGAGCTAAAGCGGCTATGGTTCTACCGCCGCCCGGCGTGGGCGCAAAAAGCTTGGGAGCAATGGTGCGAGCAGGCTCGGCAGAGCCGAATAC
CTGCCCTGGAGTTGTTTGCGAAGCGCCTGCAAGGCTACTGGCATGGCATCTTGGCCCGCTGCCGCCACCCATTGAACACCAGCGTGGTCGAAGGCATCAA
CAACACCATCAAGGTCATCAAGCGCCGCGCGTACGGCTATCGCGACGAGGAATACTTCTTCCTCAAAATCCGCGCAGCCTTCCCCGGAATTCCTCGATGA
ACC
CAAGCACTGGGTTGCTGGAAGGGCTACCGGCTGGAGCGCGTGGAATGGCCGGAGGGAGAGAGCCGTACGCTGTCGTTGTACTTGAAGCCGGTCAGCAAGG
TCATGCATTGCGAGGAGTGTGGCGCGCGCTGCCATCAGGTGCATGAGACAGTGGTCAGGCGAGTCCGGGACCTTCCGCTGTTCGAGTATCGGGTCGTACT
GCACGTGCCGCGCCGGCGCGTTTGGTGCGACCGTTGCGGCGGTCCGAGGCTGGAGCGGCTGGAATGGCTTGGGCGCTACCAACGCGTGACGGCCCGCTTG
GCCCAGGCTTGCGGCCACTTGTTGCGCCACTGTACGGTGCAGGCGGTGGCGGCCTTCTACGATCTGGGCTGGCACACAGTTAAATCGATCGATAAGGCTC
GCTTGCGTGAGGCAGTGGCCGAGCCGGACTGGTCCAATATCCGCTACCTGGCCATGGATGAGTTCGCGCTACACAAGGGGCATCGATATGCCACGGTGGT
AGTCGACCCCATTGGGCGGCAGGTGCTCTGGATCGGACAGGGGCGCTCACGCGAGACCGCCCGAGCCTTCTTTGAGCAGCTCCCCGCCGGCGTTGCGCAG
CGCATCGAGGCCGTCGCCATCGACATGACGACCGCGTATGAGTTGGAGATCCGGGCGCATTGCCCGCAAGCAGAGGTGGTCTTCGACCTGTTCCACGTGG
TAGCTAAGTACGGGCGTGAGGTCATCGACCGAGTACGGGTGGATCAGGCCAATCAGCTGCGGCACGATCGGCCGGCCAGACGGGTGCTCAAGTCCACACG
CTGGCTACTGCTGCGGAATCGGGAGAACTTGAGCGTCCCCCAGGCGGTTCATCTGGATGAGGTCCTGGAGGCGAACCGGCCATTGCTGACAGTCTATCTG
TTGCGCGACGAGCTAAAGCGGCTATGGTTCTACCGCCGCCCGGCGTGGGCGCAAAAAGCTTGGGAGCAATGGTGCGAGCAGGCTCGGCAGAGCCGAATAC
CTGCCCTGGAGTTGTTTGCGAAGCGCCTGCAAGGCTACTGGCATGGCATCTTGGCCCGCTGCCGCCACCCATTGAACACCAGCGTGGTCGAAGGCATCAA
CAACACCATCAAGGTCATCAAGCGCCGCGCGTACGGCTATCGCGACGAGGAATACTTCTTCCTCAAAATCCGCGCAGCCTTCCCCGGAATTCCTCGATGA
ACC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1221 bp | 406 aa | 80 | 1300 | + | No |
Chemistry : Unknow
ORF sequence :
VLDRKTLQALGCWKGYRLERVEWPEGESRTLSLYLKPVSKVMHCEECGARCHQVHETVVRRVRDLPLFEYRVVLHVPRRRVWCDRCGGPRLERLEWLGRY
QRVTARLAQACGHLLRHCTVQAVAAFYDLGWHTVKSIDKARLREAVAEPDWSNIRYLAMDEFALHKGHRYATVVVDPIGRQVLWIGQGRSRETARAFFEQ
LPAGVAQRIEAVAIDMTTAYELEIRAHCPQAEVVFDLFHVVAKYGREVIDRVRVDQANQLRHDRPARRVLKSTRWLLLRNRENLSVPQAVHLDEVLEANR
PLLTVYLLRDELKRLWFYRRPAWAQKAWEQWCEQARQSRIPALELFAKRLQGYWHGILARCRHPLNTSVVEGINNTIKVIKRRAYGYRDEEYFFLKIRAA
FPGIPR
QRVTARLAQACGHLLRHCTVQAVAAFYDLGWHTVKSIDKARLREAVAEPDWSNIRYLAMDEFALHKGHRYATVVVDPIGRQVLWIGQGRSRETARAFFEQ
LPAGVAQRIEAVAIDMTTAYELEIRAHCPQAEVVFDLFHVVAKYGREVIDRVRVDQANQLRHDRPARRVLKSTRWLLLRNRENLSVPQAVHLDEVLEANR
PLLTVYLLRDELKRLWFYRRPAWAQKAWEQWCEQARQSRIPALELFAKRLQGYWHGILARCRHPLNTSVVEGINNTIKVIKRRAYGYRDEEYFFLKIRAA
FPGIPR
Blast result :
Comments
ISRta1 is 92% aa similar to ISRso15.
References
1] Boivin (2008) Direct submission.