ISRta1

  • Family ISL3
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Ralstonia taiwanensis
Ralstonia taiwanensis LMG19424
DNA section
IS Length : 1303 bp

Ends


IR Length : 16/22

IRL : GGTTCTTCGCAGAAAACCGTGGCCCGAAAGAGCACATTTTGTATGCTGAT
IRR : GGTTCATCGAGGAATTCCGGGGAAGGCTGCGCGGATTTTGAGGAAGAAGT

Insertion site


Left flankDirect repeatRight flankDR Length
TAGCGTTGGCTAATTTTTTCCATCGGCA8

DNA sequence

GGTTCTTCGCAGAAAACCGTGGCCCGAAAGAGCACATTTTGTATGCTGATGTCTGTTTCTTCAGGTATCAGGGGGATGTGTGCTGGATCGCAAGACGCTG
CAAGCACTGGGTTGCTGGAAGGGCTACCGGCTGGAGCGCGTGGAATGGCCGGAGGGAGAGAGCCGTACGCTGTCGTTGTACTTGAAGCCGGTCAGCAAGG
TCATGCATTGCGAGGAGTGTGGCGCGCGCTGCCATCAGGTGCATGAGACAGTGGTCAGGCGAGTCCGGGACCTTCCGCTGTTCGAGTATCGGGTCGTACT
GCACGTGCCGCGCCGGCGCGTTTGGTGCGACCGTTGCGGCGGTCCGAGGCTGGAGCGGCTGGAATGGCTTGGGCGCTACCAACGCGTGACGGCCCGCTTG
GCCCAGGCTTGCGGCCACTTGTTGCGCCACTGTACGGTGCAGGCGGTGGCGGCCTTCTACGATCTGGGCTGGCACACAGTTAAATCGATCGATAAGGCTC
GCTTGCGTGAGGCAGTGGCCGAGCCGGACTGGTCCAATATCCGCTACCTGGCCATGGATGAGTTCGCGCTACACAAGGGGCATCGATATGCCACGGTGGT
AGTCGACCCCATTGGGCGGCAGGTGCTCTGGATCGGACAGGGGCGCTCACGCGAGACCGCCCGAGCCTTCTTTGAGCAGCTCCCCGCCGGCGTTGCGCAG
CGCATCGAGGCCGTCGCCATCGACATGACGACCGCGTATGAGTTGGAGATCCGGGCGCATTGCCCGCAAGCAGAGGTGGTCTTCGACCTGTTCCACGTGG
TAGCTAAGTACGGGCGTGAGGTCATCGACCGAGTACGGGTGGATCAGGCCAATCAGCTGCGGCACGATCGGCCGGCCAGACGGGTGCTCAAGTCCACACG
CTGGCTACTGCTGCGGAATCGGGAGAACTTGAGCGTCCCCCAGGCGGTTCATCTGGATGAGGTCCTGGAGGCGAACCGGCCATTGCTGACAGTCTATCTG
TTGCGCGACGAGCTAAAGCGGCTATGGTTCTACCGCCGCCCGGCGTGGGCGCAAAAAGCTTGGGAGCAATGGTGCGAGCAGGCTCGGCAGAGCCGAATAC
CTGCCCTGGAGTTGTTTGCGAAGCGCCTGCAAGGCTACTGGCATGGCATCTTGGCCCGCTGCCGCCACCCATTGAACACCAGCGTGGTCGAAGGCATCAA
CAACACCATCAAGGTCATCAAGCGCCGCGCGTACGGCTATCGCGACGAGGAATACTTCTTCCTCAAAATCCGCGCAGCCTTCCCCGGAATTCCTCGATGA
ACC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1221 bp406 aa801300+No
ORF function : Transposase
Chemistry : Unknow

ORF sequence :

VLDRKTLQALGCWKGYRLERVEWPEGESRTLSLYLKPVSKVMHCEECGARCHQVHETVVRRVRDLPLFEYRVVLHVPRRRVWCDRCGGPRLERLEWLGRY
QRVTARLAQACGHLLRHCTVQAVAAFYDLGWHTVKSIDKARLREAVAEPDWSNIRYLAMDEFALHKGHRYATVVVDPIGRQVLWIGQGRSRETARAFFEQ
LPAGVAQRIEAVAIDMTTAYELEIRAHCPQAEVVFDLFHVVAKYGREVIDRVRVDQANQLRHDRPARRVLKSTRWLLLRNRENLSVPQAVHLDEVLEANR
PLLTVYLLRDELKRLWFYRRPAWAQKAWEQWCEQARQSRIPALELFAKRLQGYWHGILARCRHPLNTSVVEGINNTIKVIKRRAYGYRDEEYFFLKIRAA
FPGIPR

 

Blast result :
Comments
ISRta1 is 92% aa similar to ISRso15.
References
1] Boivin (2008) Direct submission.