ISRel3
- Family IS21
- Group
Isoform Synonym(s) ISRel18
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_007762 | ND | Rhizobium etli | Rhizobium etli CFN 42 plasmid p42a |
DNA section
IS Length : 2308 bp
Ends
IR Length : 24/34
IRL : TGTCAGTACCGGAGCATACTCCCCAATAGTGCCGTTTGAATCTTCCCCAG
IRR : TGTCAATGCCGCGTAATTTTCCCCAGAAGTGCCGAAGTAAAATTCCCCAC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CTGGTCTTT | CGTGT | CCGAGAT | 5 |
DNA sequence
TGTCAGTACCGGAGCATACTCCCCAATAGTGCCGTTTGAATCTTCCCCAGGAGCTGCGCCGCTGGTCTTCCAGCGGCGCGTCATCGCCGATACTCCTTCC
GATGGTCGGAAGGGGGATATTGGTGATCAAGCTGAGGGAGACGATCATGATCTTGGATCTGCATCAGCAGGGCCTGACAGTGTCAGCTATTTCCAGAGAA
ACCGGCATCGATCGCAAGACGGTGCGCAAATACATAGAGCGGGGCCTTGAGGTCCCGCTTATGGACCGAGAAAGCCTCGCGCGACGGTTATCGATCCGTT
TGCTTCATACCTGCGGGAGCGGGTGAAGACCTATCCCGGCCTCACTGGTAGTCGGTTGCTCCGAGAACTCCGGGATCGAGGTTATGCCGGCGGTTACACC
GCCGTCACGTATTTTCTTCGTGACGTGCGACCTCCGGCAAATCCAGGTTTCGAGGTTCGCTTCGAGACGCCGCCAGGCGAACAGGCCCAAGTCGATTTCG
CCCAGTTCCACGTCGTTTTCACTGACGAGCCAATGACGCAAGGATCGTTTGGTTGTTCTCGATGGTGTTGGGTCACAGCCGCCTCATCTGGGCACGCTTC
GTCATGCATCAGAATCTGCCGACCGTCCTACGTTGCCACATCGCCGCTTTCGAGGCGATTGGTGGTGCGCCGCGGGAGGTGCTCTACGACCGGATGAAGA
CTGCCGTTATCGGCGAAGGTCAGACGGAGGGCATCATCTACAACCGTGCTCTCATCGACCTGGCCCGCCATTATGGATTTCATCCTAAGGCGTGCAAGGC
CTACCGAGCCAAGACAAAAGGCAAGGTCGAGCGGCCGTTTCGGTATATCCGCGAAGACTTCTTCCTCGCTCGTTCGTTCCGCAATCTCGACGACATGAAC
GCCCAGCTCCGGCACTGGCTCGACACCGTCGCCAATCCAAGGAAGCACGCGACGACCCAGCGTGTCGTCAACGAGGCCTTCGCCGAGGAGCGGCCGTATC
TGCGGCCGCTACCTCTGGCACCGTTCAAATCCGTTCTGAAGCTGGAGCGCCGCGTATCGCGGGAAGGCATGGTCAGCGTCGGCGGCAATACCTACAGCGT
TCCGGATGCCACACGCAGTCGCATGGTTGAGGTCCACTCTCTCGCCGACGAAGTCCGCATCTTCGAGAACGGCACACTGATCGCCACTCATCCTGTGCTG
GAGGGCCGCAAACAGCGCCGAGTCCATCCCGATCATCGACGATCGATGACGCCGCAACATAGGCCAAGGACACGAGACGAATCCCTTGTCGTCAAGCCTG
CCGGCGACACCGTGCTGCAGCGGTCGCTCGCCTTCTATGACGCCGTCGGCAAAGTCCTGGCACGGGAGAGCCGCCCATGAGCGCGACCCTCGATGCCATT
CCATCCATGATCGACCGTATTCGCCATGATCTCGTCGGTCTGAAGATGCCGCGCGCACTGGAAGCACTCGACCATGTCGTGCGCCGCCTCGAGCACGGTG
AGCTATCTGCCCTCGAGGCTATCGATATCCTGCTGTCCGAGGAACTGACCCTGCGCGAGAACAGCCGCATCAAGACCGCTTTAAGAATGGGCAGGTTAGC
GACGATCAAAACCCTTGCCGGTTTCGACTTCACCTTCCAACCTTCCCTCGACCGAGATCGCATCTTCACCCTGGCCCAGCTTGGCTTCGTCGATCGACAC
GAGGCCGTGCATTTCCTCGGCCCACCTGGAACCGGTAAGAGTCATCTTGCCACGGCGCTCGGCGTCGAAGCCGTCAAAGCTGGAAAGAGCGTCTACTTCA
CGAACCTTGCCGACCTCATCGGTTCGCTGGCCCGTTCCGAACGGGAGGGTCGGCTTCAGGAGCGCATTCGCTTCTTCTGCAGGCCAAGCCTGCTGATCGT
CGATGAGATCGGCTACCTGCCCGTCGTCCAGGGCGGCGGCAATCTATTCTTCCAACTCGTGAACGCCCGATATGAGCGAGGTGCGATGATCCTGACATCA
AACCGCGGCTTCGCTGAATGGGGCGATGTCTTCGGCGATCCAGTTGTCGCAACGGCGCTGCTCGACAGACTGTTGCATCATGCCGTCGTCGTTCAGATCG
AAGGATCGAGTTACCGATTGCGCCAGCATGCCGAACTGATGCCGGAGCATGTTCGCTCCAAAGCCCTCATCGCACCACCGGCATTCGCCCCACCTCAAAA
GCCGCGCGGGCGGCCGCCGAAAAATCCTCAATTCTCCCTGGCATCCACGTCGGCATAAGTGGGGAATTTTACTTCGGCACTTCTGGGGAAAATTACGCGG
CATTGACA
GATGGTCGGAAGGGGGATATTGGTGATCAAGCTGAGGGAGACGATCATGATCTTGGATCTGCATCAGCAGGGCCTGACAGTGTCAGCTATTTCCAGAGAA
ACCGGCATCGATCGCAAGACGGTGCGCAAATACATAGAGCGGGGCCTTGAGGTCCCGCTTATGGACCGAGAAAGCCTCGCGCGACGGTTATCGATCCGTT
TGCTTCATACCTGCGGGAGCGGGTGAAGACCTATCCCGGCCTCACTGGTAGTCGGTTGCTCCGAGAACTCCGGGATCGAGGTTATGCCGGCGGTTACACC
GCCGTCACGTATTTTCTTCGTGACGTGCGACCTCCGGCAAATCCAGGTTTCGAGGTTCGCTTCGAGACGCCGCCAGGCGAACAGGCCCAAGTCGATTTCG
CCCAGTTCCACGTCGTTTTCACTGACGAGCCAATGACGCAAGGATCGTTTGGTTGTTCTCGATGGTGTTGGGTCACAGCCGCCTCATCTGGGCACGCTTC
GTCATGCATCAGAATCTGCCGACCGTCCTACGTTGCCACATCGCCGCTTTCGAGGCGATTGGTGGTGCGCCGCGGGAGGTGCTCTACGACCGGATGAAGA
CTGCCGTTATCGGCGAAGGTCAGACGGAGGGCATCATCTACAACCGTGCTCTCATCGACCTGGCCCGCCATTATGGATTTCATCCTAAGGCGTGCAAGGC
CTACCGAGCCAAGACAAAAGGCAAGGTCGAGCGGCCGTTTCGGTATATCCGCGAAGACTTCTTCCTCGCTCGTTCGTTCCGCAATCTCGACGACATGAAC
GCCCAGCTCCGGCACTGGCTCGACACCGTCGCCAATCCAAGGAAGCACGCGACGACCCAGCGTGTCGTCAACGAGGCCTTCGCCGAGGAGCGGCCGTATC
TGCGGCCGCTACCTCTGGCACCGTTCAAATCCGTTCTGAAGCTGGAGCGCCGCGTATCGCGGGAAGGCATGGTCAGCGTCGGCGGCAATACCTACAGCGT
TCCGGATGCCACACGCAGTCGCATGGTTGAGGTCCACTCTCTCGCCGACGAAGTCCGCATCTTCGAGAACGGCACACTGATCGCCACTCATCCTGTGCTG
GAGGGCCGCAAACAGCGCCGAGTCCATCCCGATCATCGACGATCGATGACGCCGCAACATAGGCCAAGGACACGAGACGAATCCCTTGTCGTCAAGCCTG
CCGGCGACACCGTGCTGCAGCGGTCGCTCGCCTTCTATGACGCCGTCGGCAAAGTCCTGGCACGGGAGAGCCGCCCATGAGCGCGACCCTCGATGCCATT
CCATCCATGATCGACCGTATTCGCCATGATCTCGTCGGTCTGAAGATGCCGCGCGCACTGGAAGCACTCGACCATGTCGTGCGCCGCCTCGAGCACGGTG
AGCTATCTGCCCTCGAGGCTATCGATATCCTGCTGTCCGAGGAACTGACCCTGCGCGAGAACAGCCGCATCAAGACCGCTTTAAGAATGGGCAGGTTAGC
GACGATCAAAACCCTTGCCGGTTTCGACTTCACCTTCCAACCTTCCCTCGACCGAGATCGCATCTTCACCCTGGCCCAGCTTGGCTTCGTCGATCGACAC
GAGGCCGTGCATTTCCTCGGCCCACCTGGAACCGGTAAGAGTCATCTTGCCACGGCGCTCGGCGTCGAAGCCGTCAAAGCTGGAAAGAGCGTCTACTTCA
CGAACCTTGCCGACCTCATCGGTTCGCTGGCCCGTTCCGAACGGGAGGGTCGGCTTCAGGAGCGCATTCGCTTCTTCTGCAGGCCAAGCCTGCTGATCGT
CGATGAGATCGGCTACCTGCCCGTCGTCCAGGGCGGCGGCAATCTATTCTTCCAACTCGTGAACGCCCGATATGAGCGAGGTGCGATGATCCTGACATCA
AACCGCGGCTTCGCTGAATGGGGCGATGTCTTCGGCGATCCAGTTGTCGCAACGGCGCTGCTCGACAGACTGTTGCATCATGCCGTCGTCGTTCAGATCG
AAGGATCGAGTTACCGATTGCGCCAGCATGCCGAACTGATGCCGGAGCATGTTCGCTCCAAAGCCCTCATCGCACCACCGGCATTCGCCCCACCTCAAAA
GCCGCGCGGGCGGCCGCCGAAAAATCCTCAATTCTCCCTGGCATCCACGTCGGCATAAGTGGGGAATTTTACTTCGGCACTTCTGGGGAAAATTACGCGG
CATTGACA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
882 bp | 293 aa | 1377 | 2258 | + | No |
AG : IS21 helper
ORF sequence :
MSATLDAIPSMIDRIRHDLVGLKMPRALEALDHVVRRLEHGELSALEAIDILLSEELTLRENSRIKTALRMGRLATIKTLAGFDFTFQPSLDRDRIFTLA
QLGFVDRHEAVHFLGPPGTGKSHLATALGVEAVKAGKSVYFTNLADLIGSLARSEREGRLQERIRFFCRPSLLIVDEIGYLPVVQGGGNLFFQLVNARYE
RGAMILTSNRGFAEWGDVFGDPVVATALLDRLLHHAVVVQIEGSSYRLRQHAELMPEHVRSKALIAPPAFAPPQKPRGRPPKNPQFSLASTSA
QLGFVDRHEAVHFLGPPGTGKSHLATALGVEAVKAGKSVYFTNLADLIGSLARSEREGRLQERIRFFCRPSLLIVDEIGYLPVVQGGGNLFFQLVNARYE
RGAMILTSNRGFAEWGDVFGDPVVATALLDRLLHHAVVVQIEGSSYRLRQHAELMPEHVRSKALIAPPAFAPPQKPRGRPPKNPQFSLASTSA
Blast result :
Comments
ISRel3 is 74% (ORFA) and 79% (ORFB) aa similar to ISBcen28.
The transposase (ORFA) is mutated.
The transposase (ORFA) is mutated.
References
1] Gonzalez,V., Santamaria,R.I., Bustos,P., Hernandez-Gonzalez,I., Medrano-Soto,A., Moreno-Hagelsieb,G., Janga,S.C., Ramirez,M.A., Jimenez-Jacinto,V., Collado-Vides,J. and Davila,G.(2006)Proc Natl Acad Sci USA Mar 7;103(10):3834-9