ISRel3

  • Family IS21
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s) ISRel18
Accession numberTranspositionOriginHost
NC_007762 ND Rhizobium etli
Rhizobium etli CFN 42 plasmid p42a
DNA section
IS Length : 2308 bp

Ends


IR Length : 24/34

IRL : TGTCAGTACCGGAGCATACTCCCCAATAGTGCCGTTTGAATCTTCCCCAG
IRR : TGTCAATGCCGCGTAATTTTCCCCAGAAGTGCCGAAGTAAAATTCCCCAC

Insertion site


Left flankDirect repeatRight flankDR Length
CTGGTCTTTCGTGTCCGAGAT5

DNA sequence

TGTCAGTACCGGAGCATACTCCCCAATAGTGCCGTTTGAATCTTCCCCAGGAGCTGCGCCGCTGGTCTTCCAGCGGCGCGTCATCGCCGATACTCCTTCC
GATGGTCGGAAGGGGGATATTGGTGATCAAGCTGAGGGAGACGATCATGATCTTGGATCTGCATCAGCAGGGCCTGACAGTGTCAGCTATTTCCAGAGAA
ACCGGCATCGATCGCAAGACGGTGCGCAAATACATAGAGCGGGGCCTTGAGGTCCCGCTTATGGACCGAGAAAGCCTCGCGCGACGGTTATCGATCCGTT
TGCTTCATACCTGCGGGAGCGGGTGAAGACCTATCCCGGCCTCACTGGTAGTCGGTTGCTCCGAGAACTCCGGGATCGAGGTTATGCCGGCGGTTACACC
GCCGTCACGTATTTTCTTCGTGACGTGCGACCTCCGGCAAATCCAGGTTTCGAGGTTCGCTTCGAGACGCCGCCAGGCGAACAGGCCCAAGTCGATTTCG
CCCAGTTCCACGTCGTTTTCACTGACGAGCCAATGACGCAAGGATCGTTTGGTTGTTCTCGATGGTGTTGGGTCACAGCCGCCTCATCTGGGCACGCTTC
GTCATGCATCAGAATCTGCCGACCGTCCTACGTTGCCACATCGCCGCTTTCGAGGCGATTGGTGGTGCGCCGCGGGAGGTGCTCTACGACCGGATGAAGA
CTGCCGTTATCGGCGAAGGTCAGACGGAGGGCATCATCTACAACCGTGCTCTCATCGACCTGGCCCGCCATTATGGATTTCATCCTAAGGCGTGCAAGGC
CTACCGAGCCAAGACAAAAGGCAAGGTCGAGCGGCCGTTTCGGTATATCCGCGAAGACTTCTTCCTCGCTCGTTCGTTCCGCAATCTCGACGACATGAAC
GCCCAGCTCCGGCACTGGCTCGACACCGTCGCCAATCCAAGGAAGCACGCGACGACCCAGCGTGTCGTCAACGAGGCCTTCGCCGAGGAGCGGCCGTATC
TGCGGCCGCTACCTCTGGCACCGTTCAAATCCGTTCTGAAGCTGGAGCGCCGCGTATCGCGGGAAGGCATGGTCAGCGTCGGCGGCAATACCTACAGCGT
TCCGGATGCCACACGCAGTCGCATGGTTGAGGTCCACTCTCTCGCCGACGAAGTCCGCATCTTCGAGAACGGCACACTGATCGCCACTCATCCTGTGCTG
GAGGGCCGCAAACAGCGCCGAGTCCATCCCGATCATCGACGATCGATGACGCCGCAACATAGGCCAAGGACACGAGACGAATCCCTTGTCGTCAAGCCTG
CCGGCGACACCGTGCTGCAGCGGTCGCTCGCCTTCTATGACGCCGTCGGCAAAGTCCTGGCACGGGAGAGCCGCCCATGAGCGCGACCCTCGATGCCATT
CCATCCATGATCGACCGTATTCGCCATGATCTCGTCGGTCTGAAGATGCCGCGCGCACTGGAAGCACTCGACCATGTCGTGCGCCGCCTCGAGCACGGTG
AGCTATCTGCCCTCGAGGCTATCGATATCCTGCTGTCCGAGGAACTGACCCTGCGCGAGAACAGCCGCATCAAGACCGCTTTAAGAATGGGCAGGTTAGC
GACGATCAAAACCCTTGCCGGTTTCGACTTCACCTTCCAACCTTCCCTCGACCGAGATCGCATCTTCACCCTGGCCCAGCTTGGCTTCGTCGATCGACAC
GAGGCCGTGCATTTCCTCGGCCCACCTGGAACCGGTAAGAGTCATCTTGCCACGGCGCTCGGCGTCGAAGCCGTCAAAGCTGGAAAGAGCGTCTACTTCA
CGAACCTTGCCGACCTCATCGGTTCGCTGGCCCGTTCCGAACGGGAGGGTCGGCTTCAGGAGCGCATTCGCTTCTTCTGCAGGCCAAGCCTGCTGATCGT
CGATGAGATCGGCTACCTGCCCGTCGTCCAGGGCGGCGGCAATCTATTCTTCCAACTCGTGAACGCCCGATATGAGCGAGGTGCGATGATCCTGACATCA
AACCGCGGCTTCGCTGAATGGGGCGATGTCTTCGGCGATCCAGTTGTCGCAACGGCGCTGCTCGACAGACTGTTGCATCATGCCGTCGTCGTTCAGATCG
AAGGATCGAGTTACCGATTGCGCCAGCATGCCGAACTGATGCCGGAGCATGTTCGCTCCAAAGCCCTCATCGCACCACCGGCATTCGCCCCACCTCAAAA
GCCGCGCGGGCGGCCGCCGAAAAATCCTCAATTCTCCCTGGCATCCACGTCGGCATAAGTGGGGAATTTTACTTCGGCACTTCTGGGGAAAATTACGCGG
CATTGACA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
882 bp293 aa13772258+No
ORF function : Accessory Gene
AG : IS21 helper

ORF sequence :

MSATLDAIPSMIDRIRHDLVGLKMPRALEALDHVVRRLEHGELSALEAIDILLSEELTLRENSRIKTALRMGRLATIKTLAGFDFTFQPSLDRDRIFTLA
QLGFVDRHEAVHFLGPPGTGKSHLATALGVEAVKAGKSVYFTNLADLIGSLARSEREGRLQERIRFFCRPSLLIVDEIGYLPVVQGGGNLFFQLVNARYE
RGAMILTSNRGFAEWGDVFGDPVVATALLDRLLHHAVVVQIEGSSYRLRQHAELMPEHVRSKALIAPPAFAPPQKPRGRPPKNPQFSLASTSA

 

Blast result :
Comments
ISRel3 is 74% (ORFA) and 79% (ORFB) aa similar to ISBcen28.
The transposase (ORFA) is mutated.
References
1] Gonzalez,V., Santamaria,R.I., Bustos,P., Hernandez-Gonzalez,I., Medrano-Soto,A., Moreno-Hagelsieb,G., Janga,S.C., Ramirez,M.A., Jimenez-Jacinto,V., Collado-Vides,J. and Davila,G.(2006)Proc Natl Acad Sci USA Mar 7;103(10):3834-9