ISRsp3
- Family IS21
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AB069723 | ND | Rhizobium sp. | Rhizobium sp. AC100 plasmid pAC200 |
DNA section
IS Length : 2489 bp
Ends
IR Length : 30
IRL : TGTTGAGTTGCACTGAGAAGTGACCCGGGAGGGTTATAAGTTTTCACTGA
IRR : TGTTGAGTTGCACTGAGAAGTGACCCGGGATTTTCATTGAGAAGTGACCC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GAGGGCTCGG | GG | AAGGCGAAACG | 2 |
DNA sequence
TGTTGAGTTGCACTGAGAAGTGACCCGGGAGGGTTATAAGTTTTCACTGAGAATTGACCCATGTTTTCCTCGCCCCTGGCTGACAGTCAGGAGGCATCGG
AGTGATCGACATGGACCTACTCAGTGTGATCCGCCGCTGGCATTTTCGGCAAGGCATCCCCATTCGCGAGATCCGGCGGCGGACTGGATTATCGCGCAAC
ACGATCCGCAAATATCTGCGCGATGACGCGGTGGAGCCGACGTTCAAGGTTCCCAAACGGCCGAGCAAGCTTGATCAGTTTGCAGAAAAACTGACGACGT
GGCTGCGGGTGGAATCTGGCAAGTCGCGCAAACAGAAGCGAACAGCCAAGCAGCTACATGCAGATCTGGTTAAGCTGGGCTACGAGGGATCATACAGCCG
TGTTGCCGCCTTCGCCCGCTCGTGGAAGACCGAACGCCAATATGAAAAGCAAACCAGTGGGCGCGGCACATTCGTACCGCTGATCTTCCAGCCCGGTGAG
GCCTTTCAGTTCGATTGGAGTGAAGATTACGCCCTTCTGAATGGCCGGCCTACCAAGCTGCAGGTGGCCCATACCAAGCTCTCCCACAGTCGGGCGTTCA
TCACGCGAGCCTATCTGCTGCAAACGCACGAGATGTTGTTCGACGCACTGACGCAGGCCTTCCGGGTGCTGGGCGGCGTGCCTCAGCGTGGAATATTCGA
CAATATGAAGACGGCTGTAGACCGGATCGGCCAGGGCAAAGTCCGACAGGTCAATGCGCGGTTCGCTGCCATGGCCAGCCACTACCTGTTCGAAACGGAT
TTTTGCAATCCGGCCTCAGGCTGGGAGAAAGGTCAGGTCGAGAAAAACGTTCAGGATGCGCGTCGACGGTTATGGCAGCCAATGCCCAACTTCCCAGATC
TTGATGCCCTCAATGCCTGGTTGGAAGAGCGGTGCATCGCACAATGGGGAGAAATCCAGCATGGCGTCCTCCCCGGCACAGTTGCCGATGTGCACGCCGT
TGAGATTATCAGCCTGATGCCGATGGGGCGGGCCTTCGATGGCTTTGTCGAACATACCAAGCGCGTGTCGCCGACCTGCCTGATCGCGTTCGAGCGCAAT
CGCTATAGCGTTCCTGCATCCTTTGCGAACCGGCCAGTGAGCCTGCGGGTCTATCCTGATCGGTTGGTCATCGCGGCCGAGGGGCAAATCTTGTGCGAGC
ACAACCGGATTATCGACCGTTCTCACCAGAAGCCGGGGCAGACGATCTATGACTGGCGGCACTATCTGGCAGTTGTTCAGCGCAAGCCTGGCGCTTTGCG
CAATGGGGCGCCATTCCTCGAAATGCCCGAAGCCTTCCGGCAACTGCAGGGGCATCTGCTCAAGCGGCTCGGTGGTGACAGGGAGATGGTCGAAATCCTC
GCCCTTGTTCTACAGCATAACGAACAGGCTGTGCTCAGCGCCGTCGAACTGGCCCTCGAAGCTGGGGTGCCGACCAAAACCCACATCCTCAATGTTCTGC
ACCGCCTGATCGATGGCAAGGCTCCACCGGCATCCCCAATCGATGCCCCGCAGGCCCTGCGCCTCGCCCAGGAGCCTGTTGCCGATGTCGAACGCTACGA
CACGCTGAGGGCGTTACGCCATGCGTCATGATCCGGCCAGCGCCGCTGTGGTTGTCATGCTACGTGGCCTCAAAATGTATGGCATGGCGCAAGCCGCTGG
TGATCTGATCGAGCAGGGCGCGCCAGCCTTTGATGCTGCCGTTCCGATCCTCTCACAGCTTCTCAAGGCGGAGATGTCCGAGCGGGAGGTCAGGTCCATT
GCTTACCAGATCAAGGCAGCCCGGTTCCCGGCCTACAAGGATCTGGCAGGCTTCGACTTTGCCGTCAGTGAGGTCAACGAGGCGCTCGTGCGTCAACTTC
ACCGTGGTGACTTTATGGATAGCGCCGACAACGTCGTACTGATCGGCGGACCAGGCACCGGCAAAAGCCACATCGCGACGGCTTTGGGCGTCCAGGCGGT
TGAGCATCACCGCAAAAAGATCCGCTTCTTCTCCACCGTCGATCTGGTCAATGCGTTGGAGCAGGAAAAGGCCGCAAACAGAGCGGGCCAGTTGGCCGAG
CGTCTGTTGCGCCTCGACCTCGTCATCCTTGATGAGCTGGGATATCTACCCTTCAGCCCTTCAGGCGGGGCCATGCTGTTCCATCTGCTCAGCAAACTCT
ATGAGCGGACCAGCGTTGTTATCACCACCAACCTGAGCTTCAGCGAGTGGTCCAGTATCTTTGGCGATGCCAAAATGACCACCGCCCTGCTGGATCGCCT
CACGCATCATTGCCATATCCTTGAAACCGGCAATGACAGCTTCCGCTTCAGAGCCAGTTCCGCCGCCCCAAAATCCAGAAAGGACAAATCACCCGCTTGA
CCCTGCTCGTCGCAGGCAGTACATTATCCACGCCCACCCGGGTCACTTCTCAATGAAAATCCCGGGTCACTTCTCAGTGCAACTCAACA
AGTGATCGACATGGACCTACTCAGTGTGATCCGCCGCTGGCATTTTCGGCAAGGCATCCCCATTCGCGAGATCCGGCGGCGGACTGGATTATCGCGCAAC
ACGATCCGCAAATATCTGCGCGATGACGCGGTGGAGCCGACGTTCAAGGTTCCCAAACGGCCGAGCAAGCTTGATCAGTTTGCAGAAAAACTGACGACGT
GGCTGCGGGTGGAATCTGGCAAGTCGCGCAAACAGAAGCGAACAGCCAAGCAGCTACATGCAGATCTGGTTAAGCTGGGCTACGAGGGATCATACAGCCG
TGTTGCCGCCTTCGCCCGCTCGTGGAAGACCGAACGCCAATATGAAAAGCAAACCAGTGGGCGCGGCACATTCGTACCGCTGATCTTCCAGCCCGGTGAG
GCCTTTCAGTTCGATTGGAGTGAAGATTACGCCCTTCTGAATGGCCGGCCTACCAAGCTGCAGGTGGCCCATACCAAGCTCTCCCACAGTCGGGCGTTCA
TCACGCGAGCCTATCTGCTGCAAACGCACGAGATGTTGTTCGACGCACTGACGCAGGCCTTCCGGGTGCTGGGCGGCGTGCCTCAGCGTGGAATATTCGA
CAATATGAAGACGGCTGTAGACCGGATCGGCCAGGGCAAAGTCCGACAGGTCAATGCGCGGTTCGCTGCCATGGCCAGCCACTACCTGTTCGAAACGGAT
TTTTGCAATCCGGCCTCAGGCTGGGAGAAAGGTCAGGTCGAGAAAAACGTTCAGGATGCGCGTCGACGGTTATGGCAGCCAATGCCCAACTTCCCAGATC
TTGATGCCCTCAATGCCTGGTTGGAAGAGCGGTGCATCGCACAATGGGGAGAAATCCAGCATGGCGTCCTCCCCGGCACAGTTGCCGATGTGCACGCCGT
TGAGATTATCAGCCTGATGCCGATGGGGCGGGCCTTCGATGGCTTTGTCGAACATACCAAGCGCGTGTCGCCGACCTGCCTGATCGCGTTCGAGCGCAAT
CGCTATAGCGTTCCTGCATCCTTTGCGAACCGGCCAGTGAGCCTGCGGGTCTATCCTGATCGGTTGGTCATCGCGGCCGAGGGGCAAATCTTGTGCGAGC
ACAACCGGATTATCGACCGTTCTCACCAGAAGCCGGGGCAGACGATCTATGACTGGCGGCACTATCTGGCAGTTGTTCAGCGCAAGCCTGGCGCTTTGCG
CAATGGGGCGCCATTCCTCGAAATGCCCGAAGCCTTCCGGCAACTGCAGGGGCATCTGCTCAAGCGGCTCGGTGGTGACAGGGAGATGGTCGAAATCCTC
GCCCTTGTTCTACAGCATAACGAACAGGCTGTGCTCAGCGCCGTCGAACTGGCCCTCGAAGCTGGGGTGCCGACCAAAACCCACATCCTCAATGTTCTGC
ACCGCCTGATCGATGGCAAGGCTCCACCGGCATCCCCAATCGATGCCCCGCAGGCCCTGCGCCTCGCCCAGGAGCCTGTTGCCGATGTCGAACGCTACGA
CACGCTGAGGGCGTTACGCCATGCGTCATGATCCGGCCAGCGCCGCTGTGGTTGTCATGCTACGTGGCCTCAAAATGTATGGCATGGCGCAAGCCGCTGG
TGATCTGATCGAGCAGGGCGCGCCAGCCTTTGATGCTGCCGTTCCGATCCTCTCACAGCTTCTCAAGGCGGAGATGTCCGAGCGGGAGGTCAGGTCCATT
GCTTACCAGATCAAGGCAGCCCGGTTCCCGGCCTACAAGGATCTGGCAGGCTTCGACTTTGCCGTCAGTGAGGTCAACGAGGCGCTCGTGCGTCAACTTC
ACCGTGGTGACTTTATGGATAGCGCCGACAACGTCGTACTGATCGGCGGACCAGGCACCGGCAAAAGCCACATCGCGACGGCTTTGGGCGTCCAGGCGGT
TGAGCATCACCGCAAAAAGATCCGCTTCTTCTCCACCGTCGATCTGGTCAATGCGTTGGAGCAGGAAAAGGCCGCAAACAGAGCGGGCCAGTTGGCCGAG
CGTCTGTTGCGCCTCGACCTCGTCATCCTTGATGAGCTGGGATATCTACCCTTCAGCCCTTCAGGCGGGGCCATGCTGTTCCATCTGCTCAGCAAACTCT
ATGAGCGGACCAGCGTTGTTATCACCACCAACCTGAGCTTCAGCGAGTGGTCCAGTATCTTTGGCGATGCCAAAATGACCACCGCCCTGCTGGATCGCCT
CACGCATCATTGCCATATCCTTGAAACCGGCAATGACAGCTTCCGCTTCAGAGCCAGTTCCGCCGCCCCAAAATCCAGAAAGGACAAATCACCCGCTTGA
CCCTGCTCGTCGCAGGCAGTACATTATCCACGCCCACCCGGGTCACTTCTCAATGAAAATCCCGGGTCACTTCTCAGTGCAACTCAACA
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1521 bp | 506 aa | 111 | 1631 | + | No |
Chemistry : DDE
ORF sequence :
MDLLSVIRRWHFRQGIPIREIRRRTGLSRNTIRKYLRDDAVEPTFKVPKRPSKLDQFAEKLTTWLRVESGKSRKQKRTAKQLHADLVKLGYEGSYSRVAA
FARSWKTERQYEKQTSGRGTFVPLIFQPGEAFQFDWSEDYALLNGRPTKLQVAHTKLSHSRAFITRAYLLQTHEMLFDALTQAFRVLGGVPQRGIFDNMK
TAVDRIGQGKVRQVNARFAAMASHYLFETDFCNPASGWEKGQVEKNVQDARRRLWQPMPNFPDLDALNAWLEERCIAQWGEIQHGVLPGTVADVHAVEII
SLMPMGRAFDGFVEHTKRVSPTCLIAFERNRYSVPASFANRPVSLRVYPDRLVIAAEGQILCEHNRIIDRSHQKPGQTIYDWRHYLAVVQRKPGALRNGA
PFLEMPEAFRQLQGHLLKRLGGDREMVEILALVLQHNEQAVLSAVELALEAGVPTKTHILNVLHRLIDGKAPPASPIDAPQALRLAQEPVADVERYDTLR
ALRHAS
FARSWKTERQYEKQTSGRGTFVPLIFQPGEAFQFDWSEDYALLNGRPTKLQVAHTKLSHSRAFITRAYLLQTHEMLFDALTQAFRVLGGVPQRGIFDNMK
TAVDRIGQGKVRQVNARFAAMASHYLFETDFCNPASGWEKGQVEKNVQDARRRLWQPMPNFPDLDALNAWLEERCIAQWGEIQHGVLPGTVADVHAVEII
SLMPMGRAFDGFVEHTKRVSPTCLIAFERNRYSVPASFANRPVSLRVYPDRLVIAAEGQILCEHNRIIDRSHQKPGQTIYDWRHYLAVVQRKPGALRNGA
PFLEMPEAFRQLQGHLLKRLGGDREMVEILALVLQHNEQAVLSAVELALEAGVPTKTHILNVLHRLIDGKAPPASPIDAPQALRLAQEPVADVERYDTLR
ALRHAS
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
780 bp | 259 aa | 1621 | 2400 | + | No |
AG : IS21 helper
ORF sequence :
MRHDPASAAVVVMLRGLKMYGMAQAAGDLIEQGAPAFDAAVPILSQLLKAEMSEREVRSIAYQIKAARFPAYKDLAGFDFAVSEVNEALVRQLHRGDFMD
SADNVVLIGGPGTGKSHIATALGVQAVEHHRKKIRFFSTVDLVNALEQEKAANRAGQLAERLLRLDLVILDELGYLPFSPSGGAMLFHLLSKLYERTSVV
ITTNLSFSEWSSIFGDAKMTTALLDRLTHHCHILETGNDSFRFRASSAAPKSRKDKSPA
SADNVVLIGGPGTGKSHIATALGVQAVEHHRKKIRFFSTVDLVNALEQEKAANRAGQLAERLLRLDLVILDELGYLPFSPSGGAMLFHLLSKLYERTSVV
ITTNLSFSEWSSIFGDAKMTTALLDRLTHHCHILETGNDSFRFRASSAAPKSRKDKSPA
Blast result :
Comments
ISRsp3 is 81% (ORFA) and 90% (ORFB) aa similar to IS1600.
References
1] Hashimoto,M., Fukui,M., Hayano,K. and Hayatsu,M. (2002) Appl. Environ. Microbiol. 68 (3), 1220-1227