ISfinder Mirror Site

ISCps7

Family IS110
Group

MGE type ISRelated element(s) :
Isoform Synonym(s)

Accession number	Transposition	Origin	Host
NC_003910	ND	Colwellia psychrerythraea	Colwellia psychrerythraea 34H

DNA section

IS Length : 1215 bp

Ends

Left end : TTGTATGGATAATACATCCATCTTTTTTATTCTTTTCAAACCAGTTTAGGTAAAGTGAGGCCCAAGCTTTAGCAGCAACTAAAGCCTTTTTGTACGGCAG
Right end : GGAAGCTCGTTATCACGCTAAATTCTATGGTGAGAGATGGTGTTTATTGGGATCCGAAAATGAATTAACTCTTAGGGTTTGACACCATAGTCACTTGTTA

Insertion site

Left flank	Direct repeat	Right flank	DR Length
TGTAAACAGC		TACTACTAAA	0

DNA sequence

TTGTATGGATAATACATCCATCTTTTTTATTCTTTTCAAACCAGTTTAGGTAAAGTGAGGCCCAAGCTTTAGCAGCAACTAAAGCCTTTTTGTACGGCAG
TTCGATTGAGCAAAGGCTCCTCTATTGAGAGACCGATAACAAGATGGAACGCCGTATAAAACTCCAAGCACTAAACTCGGATAGTCAACTGGGCCTCGAG
CCCGAATAGCAAGGCAGAGTCAGCTTATTATGAATACACAAATTAATCAAAATGAAATTAACGTCGGTGTCGATACCGGTAAAACTCAACTCGACATTTA
CATACGTCCCTTAGGTATCTATTTCACCGTGACTAATGATGAAGATGGCATCAAAACAGCCATGACTGAAATAAAAAAGCACAAGGTAACTCGTGTTGTT
ATTGAAGCAACAGGACGATTAGAGCAAGCCTTTATCATGGCCTGTGCAAAAGCTAAAATCCCCTTTGTTATTGCCAACCCTGTCAATATTAAACGATTTG
CTGGAGCGATAAATCAAAAGGCCAAAACAGACAAACTTGATGCACAATTAATTGCCCATTATGCGGAGGCTATCAAGCCTACGTTGTCGCAACTAAAACC
AGAGCAGATAAGGCTGATGAGCGACTTATTATCTCGTCGACGACAACTCATGGACATGCAAACGATGGAGAAGAATCGTCTGCAAATAATGCCAAAGGAA
ATTACGTCATCCATTAAACCAGTGCTAACGGTGCTGAAAAATCAGTTAGAGAAAATTGATAATAAAATACATAAACTAATTGAAAGTTGTGACGAATATA
AAATCAAAAATGACATAATACAGAGCGCACCTGGTGTCGGAAAAGTAGTTGCATTTAACTTAATTAGTGAGATGCCAGAGCTTGGTTACATCAACAATAA
AGAAGCAGCATCCTTAGTTGGAGTCGCTCCGTTTAACCGAGAAAGTGGATCGTATAAAGGCAAGCGAATGATACGTGGTGGCCGTTCACAAATTAGAACC
GCAATGTATATGGCTATGATGTCAGCGATTCAATGTAATCCAACATTTAAAACACTATATCAACGATTAGTTGCGGTAGGTAAACCCAAGAAAGTAGCGA
TAATAGCGTGCATTAGGAAGCTCGTTATCACGCTAAATTCTATGGTGAGAGATGGTGTTTATTGGGATCCGAAAATGAATTAACTCTTAGGGTTTGACAC
CATAGTCACTTGTTA

Protein section

ORF number : 1

ORF 1

Length		Begin	End	Strand	Fusion ORF
954 bp	317 aa	230	1183	+	No

ORF function : Transposase
Chemistry : DEDD

ORF sequence :

MNTQINQNEINVGVDTGKTQLDIYIRPLGIYFTVTNDEDGIKTAMTEIKKHKVTRVVIEATGRLEQAFIMACAKAKIPFVIANPVNIKRFAGAINQKAKT
DKLDAQLIAHYAEAIKPTLSQLKPEQIRLMSDLLSRRRQLMDMQTMEKNRLQIMPKEITSSIKPVLTVLKNQLEKIDNKIHKLIESCDEYKIKNDIIQSA
PGVGKVVAFNLISEMPELGYINNKEAASLVGVAPFNRESGSYKGKRMIRGGRSQIRTAMYMAMMSAIQCNPTFKTLYQRLVAVGKPKKVAIIACIRKLVI
TLNSMVRDGVYWDPKMN

Blast result :

Comments

ISCps7 is 83% aa similar to IS492.

References

1] Methe,B.A., Nelson,K.E., Deming,J.W., Momen,B., Melamud,E., Zhang,X., Moult,J., Madupu,R., Nelson,W.C., Dodson,R.J., Brinkac,L.M., Daugherty,S.C., Durkin,A.S., Deboy,R.T., Kolonay,J.F., Sullivan,S.A., Zhou,L., Davidsen,T.M., Wu,M., Huston,A.L., Lewis,M., Weaver,B., Weidman,J.F., Khouri,H., Utterback,T.R., Feldblyum,T.V. and Fraser,C.M. (2005) Proc. Natl. Acad. Sci. U.S.A. 102 (31), 10913-10918.