ISCps4
- Family IS110
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_003910 | ND | Colwellia psychrerythraea | Colwellia psychrerythraea 34H |
DNA section
IS Length : 1498 bp
Ends
Left end : TTATAGTCCTTTCAGTCTGAATAAAACTATAATTAGGGTGTTCAGACCATGTGCCTATTTCATACGAATATTGATACGATATCATTTCGATGGTTACCGC
Right end : ACAATGAAGCCAAGTATTTAAAAGCATTGAGCGATAGGAATTCCCCATTACTTTTTAAAGAAAAAGCTTGTTAAAGGTCTCAGGGCGTAGAGCGGACGTT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TGTTGATACG | GCTCATGCTT | 0 | |
AAAGATACGA | CTCCACAGAT | 0 | |
CTTAGATACG | CCCCATAGAT | 0 |
DNA sequence
TTATAGTCCTTTCAGTCTGAATAAAACTATAATTAGGGTGTTCAGACCATGTGCCTATTTCATACGAATATTGATACGATATCATTTCGATGGTTACCGC
TTTACTTTCGATGTCTTAGGTACGCCTTAGCTTAAAAACGAATACTCAGGGCTTGCCCATAAACGCTATCTATATCGCTTTCGAAAAGCTTTGGCATACA
TGCTGACAATAACAATTGGAGGTAGTTATGACTAAGTTTTCAGTTTATATCGGTATTGATTGGGCAAATGATAAACACGATGTATGTGTTCAAGTGGCTA
ATTCAAGTGCACGAAAGTTTGAAGTAATTAAGCACTCACCTAAGTCGATCAATGAATGGATAACCAGCCTTCATAAGCAATACAAAGGACAAATAGCTGT
TGCTATTGAACTATCCAAAGGGCCTATCGTTTACGCACTTCAAAAATTTGATTTTATCACTATTCACCCCGTTAACACTTCAATGTTAGCTCAATACCGT
AAAGCTTTTTCACCCAGCGGTGCAAAAGACGACCCAACGGACGCAGAGCTTGCTTTAGATTTAATGCTGAGATATCCCAATAAAATTAAAGCATTAAAAA
TGGACAGTGAATCGGTTAGGAAGTTGACGTATCTAGTCGAACAGCGTCGTAAGTTAGTTGATGATAAAAGGCGGTTCAGCAACCGATTAATCATTACACT
TAAAGAATATTACCCTCACTTACTTGATTGGTTTTCACACCGAGGATCGGGGATATTTTGTGATTTCATTACACGTTGGCCCAACCTACAAAAACTTAAA
AGAGCTAGGGCTGATACCTTGAAAAAGTTTTTTGGCTCATACCCTGGACGTACTGCGGCATATAGCGTTAAGCGAATTCAATCTATTAGTGAAGCAGAGC
CGCTCACTCTCGATAACGCAGTTATCGAGTCGCACCAACTGCTTGCAGTTGCATTAGCTAATCAACTGCTTGTTGCTGTGAAGGTTATTAAGGTCTTTGA
TAGAGAAATTAGTGAGTTGTTTAATGCTTTGCCGGATGCAGAACTTTATAAATCATTACCAGGTACTGGCCCGTGTTTAGCACCTAGGCTATTAGTGGCT
ATTGGGGAAAACCGTAGTCGATTCAATAGCGCATCGGAAATTCAAATGTATGCAGGGATAGCACCCGTAACAGTGCGTAGTGGTCAAAAGAGCTGGATTC
ATTGGCGATATCAGTGTTCTAAATTTACTCGCCAATCATTTATAGAATGGGCTACTAAAAGCATAAGGCAATCTTATTGGGCGGAAATTTATTATCAGCA
GCAAAGGGAAAAAGGTAATACCCACCAGGCAGCTGTGCGTTCGCTAGCATTTAAGTGGATACGGATCATATATCGTTGTTGGAAAACTAAAGAGCCATAC
AATGAAGCCAAGTATTTAAAAGCATTGAGCGATAGGAATTCCCCATTACTTTTTAAAGAAAAAGCTTGTTAAAGGTCTCAGGGCGTAGAGCGGACGTT
TTTACTTTCGATGTCTTAGGTACGCCTTAGCTTAAAAACGAATACTCAGGGCTTGCCCATAAACGCTATCTATATCGCTTTCGAAAAGCTTTGGCATACA
TGCTGACAATAACAATTGGAGGTAGTTATGACTAAGTTTTCAGTTTATATCGGTATTGATTGGGCAAATGATAAACACGATGTATGTGTTCAAGTGGCTA
ATTCAAGTGCACGAAAGTTTGAAGTAATTAAGCACTCACCTAAGTCGATCAATGAATGGATAACCAGCCTTCATAAGCAATACAAAGGACAAATAGCTGT
TGCTATTGAACTATCCAAAGGGCCTATCGTTTACGCACTTCAAAAATTTGATTTTATCACTATTCACCCCGTTAACACTTCAATGTTAGCTCAATACCGT
AAAGCTTTTTCACCCAGCGGTGCAAAAGACGACCCAACGGACGCAGAGCTTGCTTTAGATTTAATGCTGAGATATCCCAATAAAATTAAAGCATTAAAAA
TGGACAGTGAATCGGTTAGGAAGTTGACGTATCTAGTCGAACAGCGTCGTAAGTTAGTTGATGATAAAAGGCGGTTCAGCAACCGATTAATCATTACACT
TAAAGAATATTACCCTCACTTACTTGATTGGTTTTCACACCGAGGATCGGGGATATTTTGTGATTTCATTACACGTTGGCCCAACCTACAAAAACTTAAA
AGAGCTAGGGCTGATACCTTGAAAAAGTTTTTTGGCTCATACCCTGGACGTACTGCGGCATATAGCGTTAAGCGAATTCAATCTATTAGTGAAGCAGAGC
CGCTCACTCTCGATAACGCAGTTATCGAGTCGCACCAACTGCTTGCAGTTGCATTAGCTAATCAACTGCTTGTTGCTGTGAAGGTTATTAAGGTCTTTGA
TAGAGAAATTAGTGAGTTGTTTAATGCTTTGCCGGATGCAGAACTTTATAAATCATTACCAGGTACTGGCCCGTGTTTAGCACCTAGGCTATTAGTGGCT
ATTGGGGAAAACCGTAGTCGATTCAATAGCGCATCGGAAATTCAAATGTATGCAGGGATAGCACCCGTAACAGTGCGTAGTGGTCAAAAGAGCTGGATTC
ATTGGCGATATCAGTGTTCTAAATTTACTCGCCAATCATTTATAGAATGGGCTACTAAAAGCATAAGGCAATCTTATTGGGCGGAAATTTATTATCAGCA
GCAAAGGGAAAAAGGTAATACCCACCAGGCAGCTGTGCGTTCGCTAGCATTTAAGTGGATACGGATCATATATCGTTGTTGGAAAACTAAAGAGCCATAC
AATGAAGCCAAGTATTTAAAAGCATTGAGCGATAGGAATTCCCCATTACTTTTTAAAGAAAAAGCTTGTTAAAGGTCTCAGGGCGTAGAGCGGACGTT
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1245 bp | 414 aa | 228 | 1472 | + | No |
Chemistry : DEDD
ORF sequence :
MTKFSVYIGIDWANDKHDVCVQVANSSARKFEVIKHSPKSINEWITSLHKQYKGQIAVAIELSKGPIVYALQKFDFITIHPVNTSMLAQYRKAFSPSGAK
DDPTDAELALDLMLRYPNKIKALKMDSESVRKLTYLVEQRRKLVDDKRRFSNRLIITLKEYYPHLLDWFSHRGSGIFCDFITRWPNLQKLKRARADTLKK
FFGSYPGRTAAYSVKRIQSISEAEPLTLDNAVIESHQLLAVALANQLLVAVKVIKVFDREISELFNALPDAELYKSLPGTGPCLAPRLLVAIGENRSRFN
SASEIQMYAGIAPVTVRSGQKSWIHWRYQCSKFTRQSFIEWATKSIRQSYWAEIYYQQQREKGNTHQAAVRSLAFKWIRIIYRCWKTKEPYNEAKYLKAL
SDRNSPLLFKEKAC
DDPTDAELALDLMLRYPNKIKALKMDSESVRKLTYLVEQRRKLVDDKRRFSNRLIITLKEYYPHLLDWFSHRGSGIFCDFITRWPNLQKLKRARADTLKK
FFGSYPGRTAAYSVKRIQSISEAEPLTLDNAVIESHQLLAVALANQLLVAVKVIKVFDREISELFNALPDAELYKSLPGTGPCLAPRLLVAIGENRSRFN
SASEIQMYAGIAPVTVRSGQKSWIHWRYQCSKFTRQSFIEWATKSIRQSYWAEIYYQQQREKGNTHQAAVRSLAFKWIRIIYRCWKTKEPYNEAKYLKAL
SDRNSPLLFKEKAC
Blast result :
Comments
ISCps4 is 46% aa similar to ISMpa1.There are 3 copies of ISCps4 in Colwellia psychrerythraea 34H.
References
1] Methe,B.A., Nelson,K.E., Deming,J.W., Momen,B., Melamud,E., Zhang,X., Moult,J., Madupu,R., Nelson,W.C., Dodson,R.J., Brinkac,L.M., Daugherty,S.C., Durkin,A.S., Deboy,R.T., Kolonay,J.F., Sullivan,S.A., Zhou,L., Davidsen,T.M., Wu,M., Huston,A.L., Lewis,M., Weaver,B., Weidman,J.F., Khouri,H., Utterback,T.R., Feldblyum,T.V. and Fraser,C.M. (2005) Proc. Natl. Acad. Sci. U.S.A. 102 (31), 10913-10918.