ISCps5
- Family IS110
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_003910 | ND | Colwellia psychrerythraea | Colwellia psychrerythraea 34H |
DNA section
IS Length : 1509 bp
Ends
Left end : TATAGTCCTTTTAGTCTGAATAAGACCATAATTAGGGTGTTCAGATCATGTGCCTATTTCATACGAATATTGTGCGCAAATTATCTTGATGATTTCCTCA
Right end : ATGATGAGTCGAAGTATTTAAAAGCATTACGAGATCGAAATTCTCCATTACTTTTTAAAGAAAAAGCTTGTTAAAGGTCTCAGGGCGTAGTGCGGACGTT
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| CTGTGCGCAT | AGTATTTAAT | 0 |
DNA sequence
TATAGTCCTTTTAGTCTGAATAAGACCATAATTAGGGTGTTCAGATCATGTGCCTATTTCATACGAATATTGTGCGCAAATTATCTTGATGATTTCCTCA
TTGCTTTCGATGTTTTAGGTACGCCTTAGCTCAATAACGAATACTCAGGGCTTGCCCCTAAACGCTATCTATATTGCTTTCGAAGAGCTTAGGCATACAT
GCTGACAATACTAATTGGAGGTTATGATGGCTAAATTAAATGGCAATTATTCTGTTTATGTTGGAATAGATTGGGCGAACGACAAACATGATCTATGCAT
TCAGCAAGCTAATTCAGATAGACGAAAATTTAAGGTAATAAAGCACTCAGCGAATACGATAAATGATTGGATAATCAGTCTGCATAAGCAATATAAAGGA
CAGATAGCCGTTGCTGTTGAATTATCTAAAGGACCTATTGTATATGCACTTCAGAAGTATAAATTTGTAACTATTCATCCGGTTAATCCCTCTATGTTAG
CCCAGTACCGTAAAGCCTTTTCTCCCAGTGGAGCCAAAGACGACCCAACTGACGCTGAGCTTGCACTTGATTTAATGCTCAATTATCCAAAGAAAATTAA
AGCATTAAAGATGGAAAGTGAACCTGTTCGAAAACTCACGTACTTAGTCGAACAACGCCGAAGACTGGTAGAAGATAGAAGACGCTTTAGTAATCGATTA
ATTAATACACTCAAGCAATATTATCCTCACTTATTGGATTGGTTTTCACATCGAGGCTCCGGTATGTTTTGTGATTTCATTACACGTTGGCCGAACTTAC
AAAAGTTGAAAAGAGCAAGAACTGACACATTAAGAAAGTTTTTTCATGCCTATCCTGGGCGTACAGCAAGTTGCACAGAACAACGCCTCGTGCTCATTAA
TAAAGCCGAACCACTTACCTTAGATAATGCGGTCATTGAATCACACCAGCTCTTAGCTGTGGCTCTCGCTAATCAAATGCTAGTGGTAGTCGAAGCGATT
AAAATATTTGATAAAGAAATTAGTGTGTTGTTTGAGACCTTGCCTGATGCTGAACTTTATAAATCATTACCGGGTACAGGGCCTTGTTTGGCACCAAGAC
TACTAGTTGCTATGGGAGAAAATCGTAGCCGCTTTACGAGTGCATCAGAAATTCAAATGTCTGCTGGTATAGCTCCTGTGACGGAGCGCAGTGGTCAAAA
ATGTTGGGTGCATTGGCGATACCAGTGCTCTAAATTCGTTAGGCAGTCATTTATTGAATGGGCAGCTAAAAGCGTTCATCAATCTTATTGGGCAGGTATT
TATTATCAGCAACAACGTTCAAAAGGTAACACGCATCAATCATCAGTAAGATCGTTAGCATTTAAGTGGATACGGATTTTATATCGTTGTTGGAAAACAA
AAGAGGCATATGATGAGTCGAAGTATTTAAAAGCATTACGAGATCGAAATTCTCCATTACTTTTTAAAGAAAAAGCTTGTTAAAGGTCTCAGGGCGTAGT
GCGGACGTT
TTGCTTTCGATGTTTTAGGTACGCCTTAGCTCAATAACGAATACTCAGGGCTTGCCCCTAAACGCTATCTATATTGCTTTCGAAGAGCTTAGGCATACAT
GCTGACAATACTAATTGGAGGTTATGATGGCTAAATTAAATGGCAATTATTCTGTTTATGTTGGAATAGATTGGGCGAACGACAAACATGATCTATGCAT
TCAGCAAGCTAATTCAGATAGACGAAAATTTAAGGTAATAAAGCACTCAGCGAATACGATAAATGATTGGATAATCAGTCTGCATAAGCAATATAAAGGA
CAGATAGCCGTTGCTGTTGAATTATCTAAAGGACCTATTGTATATGCACTTCAGAAGTATAAATTTGTAACTATTCATCCGGTTAATCCCTCTATGTTAG
CCCAGTACCGTAAAGCCTTTTCTCCCAGTGGAGCCAAAGACGACCCAACTGACGCTGAGCTTGCACTTGATTTAATGCTCAATTATCCAAAGAAAATTAA
AGCATTAAAGATGGAAAGTGAACCTGTTCGAAAACTCACGTACTTAGTCGAACAACGCCGAAGACTGGTAGAAGATAGAAGACGCTTTAGTAATCGATTA
ATTAATACACTCAAGCAATATTATCCTCACTTATTGGATTGGTTTTCACATCGAGGCTCCGGTATGTTTTGTGATTTCATTACACGTTGGCCGAACTTAC
AAAAGTTGAAAAGAGCAAGAACTGACACATTAAGAAAGTTTTTTCATGCCTATCCTGGGCGTACAGCAAGTTGCACAGAACAACGCCTCGTGCTCATTAA
TAAAGCCGAACCACTTACCTTAGATAATGCGGTCATTGAATCACACCAGCTCTTAGCTGTGGCTCTCGCTAATCAAATGCTAGTGGTAGTCGAAGCGATT
AAAATATTTGATAAAGAAATTAGTGTGTTGTTTGAGACCTTGCCTGATGCTGAACTTTATAAATCATTACCGGGTACAGGGCCTTGTTTGGCACCAAGAC
TACTAGTTGCTATGGGAGAAAATCGTAGCCGCTTTACGAGTGCATCAGAAATTCAAATGTCTGCTGGTATAGCTCCTGTGACGGAGCGCAGTGGTCAAAA
ATGTTGGGTGCATTGGCGATACCAGTGCTCTAAATTCGTTAGGCAGTCATTTATTGAATGGGCAGCTAAAAGCGTTCATCAATCTTATTGGGCAGGTATT
TATTATCAGCAACAACGTTCAAAAGGTAACACGCATCAATCATCAGTAAGATCGTTAGCATTTAAGTGGATACGGATTTTATATCGTTGTTGGAAAACAA
AAGAGGCATATGATGAGTCGAAGTATTTAAAAGCATTACGAGATCGAAATTCTCCATTACTTTTTAAAGAAAAAGCTTGTTAAAGGTCTCAGGGCGTAGT
GCGGACGTT
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1257 bp | 418 aa | 227 | 1483 | + | No |
Chemistry : DEDD
ORF sequence :
MAKLNGNYSVYVGIDWANDKHDLCIQQANSDRRKFKVIKHSANTINDWIISLHKQYKGQIAVAVELSKGPIVYALQKYKFVTIHPVNPSMLAQYRKAFSP
SGAKDDPTDAELALDLMLNYPKKIKALKMESEPVRKLTYLVEQRRRLVEDRRRFSNRLINTLKQYYPHLLDWFSHRGSGMFCDFITRWPNLQKLKRARTD
TLRKFFHAYPGRTASCTEQRLVLINKAEPLTLDNAVIESHQLLAVALANQMLVVVEAIKIFDKEISVLFETLPDAELYKSLPGTGPCLAPRLLVAMGENR
SRFTSASEIQMSAGIAPVTERSGQKCWVHWRYQCSKFVRQSFIEWAAKSVHQSYWAGIYYQQQRSKGNTHQSSVRSLAFKWIRILYRCWKTKEAYDESKY
LKALRDRNSPLLFKEKAC
SGAKDDPTDAELALDLMLNYPKKIKALKMESEPVRKLTYLVEQRRRLVEDRRRFSNRLINTLKQYYPHLLDWFSHRGSGMFCDFITRWPNLQKLKRARTD
TLRKFFHAYPGRTASCTEQRLVLINKAEPLTLDNAVIESHQLLAVALANQMLVVVEAIKIFDKEISVLFETLPDAELYKSLPGTGPCLAPRLLVAMGENR
SRFTSASEIQMSAGIAPVTERSGQKCWVHWRYQCSKFVRQSFIEWAAKSVHQSYWAGIYYQQQRSKGNTHQSSVRSLAFKWIRILYRCWKTKEAYDESKY
LKALRDRNSPLLFKEKAC
Blast result :
Comments
ISCps5 is 47% aa similar to ISMpa1.
References
1] Methe,B.A., Nelson,K.E., Deming,J.W., Momen,B., Melamud,E., Zhang,X., Moult,J., Madupu,R., Nelson,W.C., Dodson,R.J., Brinkac,L.M., Daugherty,S.C., Durkin,A.S., Deboy,R.T., Kolonay,J.F., Sullivan,S.A., Zhou,L., Davidsen,T.M., Wu,M., Huston,A.L., Lewis,M., Weaver,B., Weidman,J.F., Khouri,H., Utterback,T.R., Feldblyum,T.V. and Fraser,C.M. (2005) Proc. Natl. Acad. Sci. U.S.A. 102 (31), 10913-10918.