ISShes3

  • Family ISL3
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_008321 ND Shewanella sp.
Shewanella sp. MR-4
DNA section
IS Length : 1299 bp

Ends


IR Length : 18/24

IRL : GGCTCTTCTCTGAACATGGTGGAATAGGTATAGTTCTAGCCAAATTCCTC
IRR : GGCTCTTCGTTGTTATTGGTGGAACCCCATATCCAGCTTTCCAAAGTGAA

Insertion site


Left flankDirect repeatRight flankDR Length
CTAATAATGTATAGGTATATAGGTATAC8

DNA sequence

GGCTCTTCTCTGAACATGGTGGAATAGGTATAGTTCTAGCCAAATTCCTCTTAAATTTCAGTGATGAGTGAAGCTGCTTTATATCAACAAATCTTGGGGC
TAAAGGCACCTTGGGTCGTATCCAGTGTTCAACTCGATGAACCACGTCAGAGCATAATTGTTACCATCGCCTACGCTTCTCAAGCAGGCTTTAAATGCCC
TATATGCCACAATGCGAGTCGCCATTACGATTCCCGTTTCCGAAAATGGCGTCACTTGGATACCTGCCAGTATCAAACGCTCATTCAAGCTAACGTGCCA
CGAGTACACTGTACCTCACACGGTTATCAAACCCTCCAAGTCCCATGGGCCAGTGGCAGCAGTCGTTACACTGAATTGTTTGAGATGCGTGTATTAACCT
TGCTTGCGATGAGTTCTCTTAATGCCGTCAGTCGGTTCTTTAAACTGAGCTGGGGAGCCATGGATAGGATTATGGCGCGCGCTGTTTATCGTGGACTGGC
AAAACGCAAACTGATTAATACCGATTATTTATTGGTCGATGAAACCGCTCTTAAAAAGGGGCATGAATATGTCACGCTGCTCTCTAATCATGAAGGACAA
GTTTTAGCGGTTTCAGAGGGACGTTCAGCTGCAAGTTTTGATGCCTGCCTAAAACAGCTGCCTGCAGATGCATTACGTCAAACTCAGTCTATCTGTATGG
ATATGAGCCCTACTTACATTAAAGCAGCAAAGAAAGCGCTGCCCAATGCAGAGAGGAAAATCGCATTTGATCACTTCCATGTAGCCAAGATGCTAACGGA
GGCGGTTAACCGGATCCGCAAAGACGAGTTATTCAGGTTGGCGCCGTCAATGCGGCAAGAGGCACATCGCACACGTTTTTACTGGTTAAAGCGACGAGAT
AATCTCAGCGAACCCGACCGAGAGAGGGTCAATAGACTCATCCCGGCAATGATGAATACGGCTCTTGCATGGTATTTTAAAGAGCAGGCTCGGAACATCT
GGCATGGCAATAGTGTTCGAGGAACAAAGCAGCGATGGAAAGATTGGATAGCTTTAGCTAAAGCCAGCGGTCTCAAACCCTTAATGGCAGTGGCAGATAC
AATCGAGAACAAACTCTGGGGCATACTTAATGCCATGCGCTTTGGTCTATCAAACGGTTTGGCAGAAGCAATCAATAGCCAAGTTAGACAGCTCAGAGTA
AAGGCTATGGGGTATCGAAATTCAGAGCGATTTCAACGTGCCATCCTCTTTCACTTTGGAAAGCTGGATATGGGGTTCCACCAATAACAACGAAGAGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1224 bp407 aa641287+No
ORF function : Transposase
Chemistry : Unknow

ORF sequence :

MSEAALYQQILGLKAPWVVSSVQLDEPRQSIIVTIAYASQAGFKCPICHNASRHYDSRFRKWRHLDTCQYQTLIQANVPRVHCTSHGYQTLQVPWASGSS
RYTELFEMRVLTLLAMSSLNAVSRFFKLSWGAMDRIMARAVYRGLAKRKLINTDYLLVDETALKKGHEYVTLLSNHEGQVLAVSEGRSAASFDACLKQLP
ADALRQTQSICMDMSPTYIKAAKKALPNAERKIAFDHFHVAKMLTEAVNRIRKDELFRLAPSMRQEAHRTRFYWLKRRDNLSEPDRERVNRLIPAMMNTA
LAWYFKEQARNIWHGNSVRGTKQRWKDWIALAKASGLKPLMAVADTIENKLWGILNAMRFGLSNGLAEAINSQVRQLRVKAMGYRNSERFQRAILFHFGK
LDMGFHQ

 

Blast result :
Comments
There is one copy of ISShes3 on the Shewanella species MR-4 chromosome. ISShes3 is 53% aa similar to ISArch5.
References
1] Romine, M. (2008) Direct submission.