ISShes3
- Family ISL3
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_008321 | ND | Shewanella sp. | Shewanella sp. MR-4 |
DNA section
IS Length : 1299 bp
Ends
IR Length : 18/24
IRL : GGCTCTTCTCTGAACATGGTGGAATAGGTATAGTTCTAGCCAAATTCCTC
IRR : GGCTCTTCGTTGTTATTGGTGGAACCCCATATCCAGCTTTCCAAAGTGAA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CTAATAATGT | ATAGGTAT | ATAGGTATAC | 8 |
DNA sequence
GGCTCTTCTCTGAACATGGTGGAATAGGTATAGTTCTAGCCAAATTCCTCTTAAATTTCAGTGATGAGTGAAGCTGCTTTATATCAACAAATCTTGGGGC
TAAAGGCACCTTGGGTCGTATCCAGTGTTCAACTCGATGAACCACGTCAGAGCATAATTGTTACCATCGCCTACGCTTCTCAAGCAGGCTTTAAATGCCC
TATATGCCACAATGCGAGTCGCCATTACGATTCCCGTTTCCGAAAATGGCGTCACTTGGATACCTGCCAGTATCAAACGCTCATTCAAGCTAACGTGCCA
CGAGTACACTGTACCTCACACGGTTATCAAACCCTCCAAGTCCCATGGGCCAGTGGCAGCAGTCGTTACACTGAATTGTTTGAGATGCGTGTATTAACCT
TGCTTGCGATGAGTTCTCTTAATGCCGTCAGTCGGTTCTTTAAACTGAGCTGGGGAGCCATGGATAGGATTATGGCGCGCGCTGTTTATCGTGGACTGGC
AAAACGCAAACTGATTAATACCGATTATTTATTGGTCGATGAAACCGCTCTTAAAAAGGGGCATGAATATGTCACGCTGCTCTCTAATCATGAAGGACAA
GTTTTAGCGGTTTCAGAGGGACGTTCAGCTGCAAGTTTTGATGCCTGCCTAAAACAGCTGCCTGCAGATGCATTACGTCAAACTCAGTCTATCTGTATGG
ATATGAGCCCTACTTACATTAAAGCAGCAAAGAAAGCGCTGCCCAATGCAGAGAGGAAAATCGCATTTGATCACTTCCATGTAGCCAAGATGCTAACGGA
GGCGGTTAACCGGATCCGCAAAGACGAGTTATTCAGGTTGGCGCCGTCAATGCGGCAAGAGGCACATCGCACACGTTTTTACTGGTTAAAGCGACGAGAT
AATCTCAGCGAACCCGACCGAGAGAGGGTCAATAGACTCATCCCGGCAATGATGAATACGGCTCTTGCATGGTATTTTAAAGAGCAGGCTCGGAACATCT
GGCATGGCAATAGTGTTCGAGGAACAAAGCAGCGATGGAAAGATTGGATAGCTTTAGCTAAAGCCAGCGGTCTCAAACCCTTAATGGCAGTGGCAGATAC
AATCGAGAACAAACTCTGGGGCATACTTAATGCCATGCGCTTTGGTCTATCAAACGGTTTGGCAGAAGCAATCAATAGCCAAGTTAGACAGCTCAGAGTA
AAGGCTATGGGGTATCGAAATTCAGAGCGATTTCAACGTGCCATCCTCTTTCACTTTGGAAAGCTGGATATGGGGTTCCACCAATAACAACGAAGAGCC
TAAAGGCACCTTGGGTCGTATCCAGTGTTCAACTCGATGAACCACGTCAGAGCATAATTGTTACCATCGCCTACGCTTCTCAAGCAGGCTTTAAATGCCC
TATATGCCACAATGCGAGTCGCCATTACGATTCCCGTTTCCGAAAATGGCGTCACTTGGATACCTGCCAGTATCAAACGCTCATTCAAGCTAACGTGCCA
CGAGTACACTGTACCTCACACGGTTATCAAACCCTCCAAGTCCCATGGGCCAGTGGCAGCAGTCGTTACACTGAATTGTTTGAGATGCGTGTATTAACCT
TGCTTGCGATGAGTTCTCTTAATGCCGTCAGTCGGTTCTTTAAACTGAGCTGGGGAGCCATGGATAGGATTATGGCGCGCGCTGTTTATCGTGGACTGGC
AAAACGCAAACTGATTAATACCGATTATTTATTGGTCGATGAAACCGCTCTTAAAAAGGGGCATGAATATGTCACGCTGCTCTCTAATCATGAAGGACAA
GTTTTAGCGGTTTCAGAGGGACGTTCAGCTGCAAGTTTTGATGCCTGCCTAAAACAGCTGCCTGCAGATGCATTACGTCAAACTCAGTCTATCTGTATGG
ATATGAGCCCTACTTACATTAAAGCAGCAAAGAAAGCGCTGCCCAATGCAGAGAGGAAAATCGCATTTGATCACTTCCATGTAGCCAAGATGCTAACGGA
GGCGGTTAACCGGATCCGCAAAGACGAGTTATTCAGGTTGGCGCCGTCAATGCGGCAAGAGGCACATCGCACACGTTTTTACTGGTTAAAGCGACGAGAT
AATCTCAGCGAACCCGACCGAGAGAGGGTCAATAGACTCATCCCGGCAATGATGAATACGGCTCTTGCATGGTATTTTAAAGAGCAGGCTCGGAACATCT
GGCATGGCAATAGTGTTCGAGGAACAAAGCAGCGATGGAAAGATTGGATAGCTTTAGCTAAAGCCAGCGGTCTCAAACCCTTAATGGCAGTGGCAGATAC
AATCGAGAACAAACTCTGGGGCATACTTAATGCCATGCGCTTTGGTCTATCAAACGGTTTGGCAGAAGCAATCAATAGCCAAGTTAGACAGCTCAGAGTA
AAGGCTATGGGGTATCGAAATTCAGAGCGATTTCAACGTGCCATCCTCTTTCACTTTGGAAAGCTGGATATGGGGTTCCACCAATAACAACGAAGAGCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1224 bp | 407 aa | 64 | 1287 | + | No |
Chemistry : Unknow
ORF sequence :
MSEAALYQQILGLKAPWVVSSVQLDEPRQSIIVTIAYASQAGFKCPICHNASRHYDSRFRKWRHLDTCQYQTLIQANVPRVHCTSHGYQTLQVPWASGSS
RYTELFEMRVLTLLAMSSLNAVSRFFKLSWGAMDRIMARAVYRGLAKRKLINTDYLLVDETALKKGHEYVTLLSNHEGQVLAVSEGRSAASFDACLKQLP
ADALRQTQSICMDMSPTYIKAAKKALPNAERKIAFDHFHVAKMLTEAVNRIRKDELFRLAPSMRQEAHRTRFYWLKRRDNLSEPDRERVNRLIPAMMNTA
LAWYFKEQARNIWHGNSVRGTKQRWKDWIALAKASGLKPLMAVADTIENKLWGILNAMRFGLSNGLAEAINSQVRQLRVKAMGYRNSERFQRAILFHFGK
LDMGFHQ
RYTELFEMRVLTLLAMSSLNAVSRFFKLSWGAMDRIMARAVYRGLAKRKLINTDYLLVDETALKKGHEYVTLLSNHEGQVLAVSEGRSAASFDACLKQLP
ADALRQTQSICMDMSPTYIKAAKKALPNAERKIAFDHFHVAKMLTEAVNRIRKDELFRLAPSMRQEAHRTRFYWLKRRDNLSEPDRERVNRLIPAMMNTA
LAWYFKEQARNIWHGNSVRGTKQRWKDWIALAKASGLKPLMAVADTIENKLWGILNAMRFGLSNGLAEAINSQVRQLRVKAMGYRNSERFQRAILFHFGK
LDMGFHQ
Blast result :
Comments
There is one copy of ISShes3 on the Shewanella species MR-4 chromosome. ISShes3 is 53% aa similar to ISArch5.
References
1] Romine, M. (2008) Direct submission.