ISShes7

  • Family IS110
  • Group IS1111
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_008321 ND Shewanella sp.
Shewanella sp. MR-4
DNA section
IS Length : 1352 bp

Ends


IR Length : 11

IRL : ggatgatgggATGGACACCTCTTGTGAAGTAGGCGTCATTTACGCCATAT
IRR : --tatATGGACACCTCGAATAGATCAACCACTTTTTAAGTAACAGAAAGT

Insertion site


Left flankDirect repeatRight flankDR Length
GAGCATACATTGTACTCGCT0
GAGCATACATCGTACTTGCT0
CACGGATGATGGACTTGCTG0
GAGCATCCACGGACTTGCTG0

DNA sequence

GGATGATGGGATGGACACCTCTTGTGAAGTAGGCGTCATTTACGCCATATTGAATTTGCACGTTCAATAACAACAAAAGGTGTCCAAAATGAAAGTTACA
CTAATAGGAATTGATCTCGCAAAAAATATCTTCCAAGTATGTGGGGTAAATCAAGCTGGCAAGAGTGTTTTTAACCGTTCGATTAAACGTGCTCAGCTCC
TTACTTTTCTGCGTACTTACCCTGATGCCACTATTGCGATGGAAGCCTGCAGTGGCTCTAACTATTGGGGCAGAGAGTTACTTTCTCTCGGGCATGACGT
CAAACTGATCCCGCCTCAGCATGTTAAGCCATTTGTCAAAGGCAATAAGAACGATCGCAATGATGCCTTCGCTATCTGTGAGGCGGCGCAGAGACCGAAC
CTGATTTTCGTCCAGCCGAGAACCTTAGCGCAGGTTGATATCATCATTACTCACAGAATTCGCGAGCGCCGGATCAGAATACGCACTGCACTAACCAATC
AAATCAGAGGTTTACTAAGTGAATATGGAATAGCCCTCCCTAAAGGACGTAATCCATTGAATCTTTTACTGCCGGAATTACTTGAGGATGCCAGTAATCA
ACTCACTACGATTGCACGCCAATACATGCGTGAGCTGATGGAAGAGTTGCGTGCGATCAACGTTGCAATAGGTTCACTGGAAAAAGACATCAAACTGCAG
GCAAGAACGCACCCAGATGCCAAGCGACTAATGGGTATAAGAGGCGTTGCAGAAATCATTGCCACTGCCGCGGTGTCATTTGCCGGAGATGGCTCTGGCT
ATCATGGTGCTCGGCATTTTTCTGCAAATTTAGGACTGGTTCCTAAAGAGTTTTCCAGTGGGGGAAAACAGAAATTAAGCGGCATAACCAAACGAGGTAA
CAGCTATCTGCGGCGGCAACTGATCCAGGGAGCTTGGTCGATTATTCGCTATGCAAGTAAGAGTAATGACAGGATCTCCGTATGGGCCTTAAAGGTGATT
GAGCGGCGGGGTAAACAGAAAGCGGCAGTAGCAATTGCAAACAAATTGGCGCGGATCATTTGGGCGCTGCTGTTTCATCGCAGCGAATATCGGTCTTGTT
AATTTGTAAAAATCGAGTATTAAACTCACCCCAAAAACACGACTACAGATAATGAAGTAACAGGTAATACCGGCCTTTGCAGATGCTGAGAGAGTACAAG
GAGCATATGACTCCGGACGGACGATAAGCTGCAAAGGCGCGGTTCTCATTAAGGCCAGAGAGCAAAGATTCTCATAAACAGGTCGGATATACGTACGCAG
TATTACTTTCTGTTACTTAAAAAGTGGTTGATCTATTCGAGGTGTCCATATA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1014 bp337 aa891102+No
ORF function : Transposase
Chemistry : DEDD

ORF sequence :

MKVTLIGIDLAKNIFQVCGVNQAGKSVFNRSIKRAQLLTFLRTYPDATIAMEACSGSNYWGRELLSLGHDVKLIPPQHVKPFVKGNKNDRNDAFAICEAA
QRPNLIFVQPRTLAQVDIIITHRIRERRIRIRTALTNQIRGLLSEYGIALPKGRNPLNLLLPELLEDASNQLTTIARQYMRELMEELRAINVAIGSLEKD
IKLQARTHPDAKRLMGIRGVAEIIATAAVSFAGDGSGYHGARHFSANLGLVPKEFSSGGKQKLSGITKRGNSYLRRQLIQGAWSIIRYASKSNDRISVWA
LKVIERRGKQKAAVAIANKLARIIWALLFHRSEYRSC

 

Blast result :
Comments
The inverted repeat are not at the termini of the IS but start at position 13 on the 5' end and at position 4 on the 3' end. There are 4 copies of ISShes7 encoded in the Shewanella species MR-4 chromosome. The ISShes7 transposase has 46% identity to the ISSde4 transposase
References
1] Romine, M. (2008) Direct submission.