ISShes7
- Family IS110
- Group IS1111
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_008321 | ND | Shewanella sp. | Shewanella sp. MR-4 |
DNA section
IS Length : 1352 bp
Ends
IR Length : 11
IRL : ggatgatgggATGGACACCTCTTGTGAAGTAGGCGTCATTTACGCCATAT
IRR : --tatATGGACACCTCGAATAGATCAACCACTTTTTAAGTAACAGAAAGT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GAGCATACAT | TGTACTCGCT | 0 | |
GAGCATACAT | CGTACTTGCT | 0 | |
CACGGATGAT | GGACTTGCTG | 0 | |
GAGCATCCAC | GGACTTGCTG | 0 |
DNA sequence
GGATGATGGGATGGACACCTCTTGTGAAGTAGGCGTCATTTACGCCATATTGAATTTGCACGTTCAATAACAACAAAAGGTGTCCAAAATGAAAGTTACA
CTAATAGGAATTGATCTCGCAAAAAATATCTTCCAAGTATGTGGGGTAAATCAAGCTGGCAAGAGTGTTTTTAACCGTTCGATTAAACGTGCTCAGCTCC
TTACTTTTCTGCGTACTTACCCTGATGCCACTATTGCGATGGAAGCCTGCAGTGGCTCTAACTATTGGGGCAGAGAGTTACTTTCTCTCGGGCATGACGT
CAAACTGATCCCGCCTCAGCATGTTAAGCCATTTGTCAAAGGCAATAAGAACGATCGCAATGATGCCTTCGCTATCTGTGAGGCGGCGCAGAGACCGAAC
CTGATTTTCGTCCAGCCGAGAACCTTAGCGCAGGTTGATATCATCATTACTCACAGAATTCGCGAGCGCCGGATCAGAATACGCACTGCACTAACCAATC
AAATCAGAGGTTTACTAAGTGAATATGGAATAGCCCTCCCTAAAGGACGTAATCCATTGAATCTTTTACTGCCGGAATTACTTGAGGATGCCAGTAATCA
ACTCACTACGATTGCACGCCAATACATGCGTGAGCTGATGGAAGAGTTGCGTGCGATCAACGTTGCAATAGGTTCACTGGAAAAAGACATCAAACTGCAG
GCAAGAACGCACCCAGATGCCAAGCGACTAATGGGTATAAGAGGCGTTGCAGAAATCATTGCCACTGCCGCGGTGTCATTTGCCGGAGATGGCTCTGGCT
ATCATGGTGCTCGGCATTTTTCTGCAAATTTAGGACTGGTTCCTAAAGAGTTTTCCAGTGGGGGAAAACAGAAATTAAGCGGCATAACCAAACGAGGTAA
CAGCTATCTGCGGCGGCAACTGATCCAGGGAGCTTGGTCGATTATTCGCTATGCAAGTAAGAGTAATGACAGGATCTCCGTATGGGCCTTAAAGGTGATT
GAGCGGCGGGGTAAACAGAAAGCGGCAGTAGCAATTGCAAACAAATTGGCGCGGATCATTTGGGCGCTGCTGTTTCATCGCAGCGAATATCGGTCTTGTT
AATTTGTAAAAATCGAGTATTAAACTCACCCCAAAAACACGACTACAGATAATGAAGTAACAGGTAATACCGGCCTTTGCAGATGCTGAGAGAGTACAAG
GAGCATATGACTCCGGACGGACGATAAGCTGCAAAGGCGCGGTTCTCATTAAGGCCAGAGAGCAAAGATTCTCATAAACAGGTCGGATATACGTACGCAG
TATTACTTTCTGTTACTTAAAAAGTGGTTGATCTATTCGAGGTGTCCATATA
CTAATAGGAATTGATCTCGCAAAAAATATCTTCCAAGTATGTGGGGTAAATCAAGCTGGCAAGAGTGTTTTTAACCGTTCGATTAAACGTGCTCAGCTCC
TTACTTTTCTGCGTACTTACCCTGATGCCACTATTGCGATGGAAGCCTGCAGTGGCTCTAACTATTGGGGCAGAGAGTTACTTTCTCTCGGGCATGACGT
CAAACTGATCCCGCCTCAGCATGTTAAGCCATTTGTCAAAGGCAATAAGAACGATCGCAATGATGCCTTCGCTATCTGTGAGGCGGCGCAGAGACCGAAC
CTGATTTTCGTCCAGCCGAGAACCTTAGCGCAGGTTGATATCATCATTACTCACAGAATTCGCGAGCGCCGGATCAGAATACGCACTGCACTAACCAATC
AAATCAGAGGTTTACTAAGTGAATATGGAATAGCCCTCCCTAAAGGACGTAATCCATTGAATCTTTTACTGCCGGAATTACTTGAGGATGCCAGTAATCA
ACTCACTACGATTGCACGCCAATACATGCGTGAGCTGATGGAAGAGTTGCGTGCGATCAACGTTGCAATAGGTTCACTGGAAAAAGACATCAAACTGCAG
GCAAGAACGCACCCAGATGCCAAGCGACTAATGGGTATAAGAGGCGTTGCAGAAATCATTGCCACTGCCGCGGTGTCATTTGCCGGAGATGGCTCTGGCT
ATCATGGTGCTCGGCATTTTTCTGCAAATTTAGGACTGGTTCCTAAAGAGTTTTCCAGTGGGGGAAAACAGAAATTAAGCGGCATAACCAAACGAGGTAA
CAGCTATCTGCGGCGGCAACTGATCCAGGGAGCTTGGTCGATTATTCGCTATGCAAGTAAGAGTAATGACAGGATCTCCGTATGGGCCTTAAAGGTGATT
GAGCGGCGGGGTAAACAGAAAGCGGCAGTAGCAATTGCAAACAAATTGGCGCGGATCATTTGGGCGCTGCTGTTTCATCGCAGCGAATATCGGTCTTGTT
AATTTGTAAAAATCGAGTATTAAACTCACCCCAAAAACACGACTACAGATAATGAAGTAACAGGTAATACCGGCCTTTGCAGATGCTGAGAGAGTACAAG
GAGCATATGACTCCGGACGGACGATAAGCTGCAAAGGCGCGGTTCTCATTAAGGCCAGAGAGCAAAGATTCTCATAAACAGGTCGGATATACGTACGCAG
TATTACTTTCTGTTACTTAAAAAGTGGTTGATCTATTCGAGGTGTCCATATA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1014 bp | 337 aa | 89 | 1102 | + | No |
Chemistry : DEDD
ORF sequence :
MKVTLIGIDLAKNIFQVCGVNQAGKSVFNRSIKRAQLLTFLRTYPDATIAMEACSGSNYWGRELLSLGHDVKLIPPQHVKPFVKGNKNDRNDAFAICEAA
QRPNLIFVQPRTLAQVDIIITHRIRERRIRIRTALTNQIRGLLSEYGIALPKGRNPLNLLLPELLEDASNQLTTIARQYMRELMEELRAINVAIGSLEKD
IKLQARTHPDAKRLMGIRGVAEIIATAAVSFAGDGSGYHGARHFSANLGLVPKEFSSGGKQKLSGITKRGNSYLRRQLIQGAWSIIRYASKSNDRISVWA
LKVIERRGKQKAAVAIANKLARIIWALLFHRSEYRSC
QRPNLIFVQPRTLAQVDIIITHRIRERRIRIRTALTNQIRGLLSEYGIALPKGRNPLNLLLPELLEDASNQLTTIARQYMRELMEELRAINVAIGSLEKD
IKLQARTHPDAKRLMGIRGVAEIIATAAVSFAGDGSGYHGARHFSANLGLVPKEFSSGGKQKLSGITKRGNSYLRRQLIQGAWSIIRYASKSNDRISVWA
LKVIERRGKQKAAVAIANKLARIIWALLFHRSEYRSC
Blast result :
Comments
The inverted repeat are not at the termini of the IS but start at position 13 on the 5' end and at position 4 on the 3' end. There are 4 copies of ISShes7 encoded in the Shewanella species MR-4 chromosome. The ISShes7 transposase has 46% identity to the ISSde4 transposase
References
1] Romine, M. (2008) Direct submission.