ISShes6

  • Family IS4
  • Group IS10
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_008321 ND Shewanella sp.
Shewanella sp. MR-4
DNA section
IS Length : 1338 bp

Ends


IR Length : 18/26

IRL : CTGAAGAATCCCCTGATGATTTTCAGATAAATCATTAAATTAGAGTGAAC
IRR : CTGTAGGATCCCCTCATAATTCATAGCCCCAACAACCATGAGTCAATGAG

Insertion site


Left flankDirect repeatRight flankDR Length
GGCCCCTGAACGCTGAGCAGCGACAGCAA9

DNA sequence

CTGAAGAATCCCCTGATGATTTTCAGATAAATCATTAAATTAGAGTGAACTTGCACCTTGAAGTGTGATCAGATGGAAGTGCGAACAAACATCAATCACA
GGGCATCAAGGTGCAAGTGTTAACTACCTTACATCAATCTCTCTATCAACATTGTCCAGAAATCCATCAAAAGCGACTGAATACACTCATGGTCGCCTGC
AAAGCCCTCATCAATGCGGATTGTCTCACCCTAACCCATTTAGGGCGGCACATTGATGGCTCCAGCACTCATACAAAACACTCAATAAAACGCATGGATA
GATTATTGGGCAACCTGCACCTTCACCATGAAAGACTGGCGATTTATCAGTGGCATGCAAAGTGGCTGCTGACTACTCATACTATGCCGACCATACTAGT
GGATTGGTCAGATATGCGTGAAGGTCGTGAGCTGATTGCACTACGCGCCTCTATTGCTATCAAAGGCCGCTCTATCACGCTCTACGAGCGAACATTTCCG
TTAATCCTGCAAGGCACTCAAACTGCGCATAATCAGTTTCTGAATGAACTCAGACAAGTGTTACCTGATAACATTACCCCGCTGATAGTCACTGACGCGG
GCTTCCGTAATCCATGGTTTCGCAAAGTCGAGCAGCTCGGTTGGTATTGGCTGGGTCGTGTCAGAGGATTAAGTGTCTATCGGCCGCATCCTTCTGGTCG
CCAATTTTCACTAAAAGCGCTTTATCCCAAAGCCAGTTGTCGTGCAAAACATGTTGGACGGGTGGCGTTATCGGTAAAGAAACCCTTGTTATGCGAGATG
GTGTTGTTCAGAGCCCCAAGTAAAGGCAGAAAAGGTCAGCGAAGTACGACAACTGACTGTCACCATACGGCGCAATGGACGTATGAACTGACAGCCAAAG
AGCCTTGGGCACTGGTGACCAACTTGACCATAGAAGCCATGTCGCCTCAAAAACTGGTTAATATTTACCAAAAACGGATGCAAATAAAAGAAACCTTTAG
AGATTTAAAAAGCCCCGCTTATGGCTTTGGTTTACGTCATAGCAGCACACGTTATGCGGCGAGGATGGACATACTGCTATTGATAGCATTATTGGTGCAA
CTGGCATTTTGGTGGGTAGGATTATACGGAGAAACACAGCAACTACAGCGGCACTTCCAAGCCAACACGGTAAAGAAAAGGAATGTGCTATCAACAATCA
GGATGGGCAAAGAACTGCTGCGGCGACGACATGACTACCCCATATCAGCAGATGATTTACTTTGTGCTGCGAAGAAACTAGCCCAACTCTCATTGACTCA
TGGTTGTTGGGGCTATGAATTATGAGGGGATCCTACAG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1200 bp404 aa1111310+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MQVLTTLHQSLYQHCPEIHQKRLNTLMVACKALINADCLTLTHLGRHIDGSSTHTKHSIKRMDRLLGNLHLHHERLAIYQWHAKWLLTTHTMPTILVDWS
DMREGRELIALRASIAIKGRSITLYERTFPLILQGTQTAHNQFLNELRQVLPDNITPLIVTDAGFRNPWFRKVEQLGWYWLGRVRGLSVYRPHPSGRQFS
LKALYPKASCRAKHVGRVALSVKKPLLCEMVLFRAPSKGRKGQRSTTTDCHHTAQWTYELTAKEPWALVTNLTIEAMSPQKLVNIYQKRMQIKETFRDLK
SPAYGFGLRHSSTRYAARMDILLLIALLVQLAFWWVGLYGETQQLQRHFQANTVKKRNVLSTIRMGKELLRRRHDYPISADDLLCAAKKLAQLSLTHGCW
GYEL

 

Blast result :
Comments
There is one copy of ISShes6 encoded in the Shewanella species MR-4 genome. The ISShes6 transposase has 96% identity with ISSod3.
References
1] Romine, M. (2008) Direct submission.