ISShes6
- Family IS4
- Group IS10
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_008321 | ND | Shewanella sp. | Shewanella sp. MR-4 |
DNA section
IS Length : 1338 bp
Ends
IR Length : 18/26
IRL : CTGAAGAATCCCCTGATGATTTTCAGATAAATCATTAAATTAGAGTGAAC
IRR : CTGTAGGATCCCCTCATAATTCATAGCCCCAACAACCATGAGTCAATGAG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GGCCCCTGAA | CGCTGAGCA | GCGACAGCAA | 9 |
DNA sequence
CTGAAGAATCCCCTGATGATTTTCAGATAAATCATTAAATTAGAGTGAACTTGCACCTTGAAGTGTGATCAGATGGAAGTGCGAACAAACATCAATCACA
GGGCATCAAGGTGCAAGTGTTAACTACCTTACATCAATCTCTCTATCAACATTGTCCAGAAATCCATCAAAAGCGACTGAATACACTCATGGTCGCCTGC
AAAGCCCTCATCAATGCGGATTGTCTCACCCTAACCCATTTAGGGCGGCACATTGATGGCTCCAGCACTCATACAAAACACTCAATAAAACGCATGGATA
GATTATTGGGCAACCTGCACCTTCACCATGAAAGACTGGCGATTTATCAGTGGCATGCAAAGTGGCTGCTGACTACTCATACTATGCCGACCATACTAGT
GGATTGGTCAGATATGCGTGAAGGTCGTGAGCTGATTGCACTACGCGCCTCTATTGCTATCAAAGGCCGCTCTATCACGCTCTACGAGCGAACATTTCCG
TTAATCCTGCAAGGCACTCAAACTGCGCATAATCAGTTTCTGAATGAACTCAGACAAGTGTTACCTGATAACATTACCCCGCTGATAGTCACTGACGCGG
GCTTCCGTAATCCATGGTTTCGCAAAGTCGAGCAGCTCGGTTGGTATTGGCTGGGTCGTGTCAGAGGATTAAGTGTCTATCGGCCGCATCCTTCTGGTCG
CCAATTTTCACTAAAAGCGCTTTATCCCAAAGCCAGTTGTCGTGCAAAACATGTTGGACGGGTGGCGTTATCGGTAAAGAAACCCTTGTTATGCGAGATG
GTGTTGTTCAGAGCCCCAAGTAAAGGCAGAAAAGGTCAGCGAAGTACGACAACTGACTGTCACCATACGGCGCAATGGACGTATGAACTGACAGCCAAAG
AGCCTTGGGCACTGGTGACCAACTTGACCATAGAAGCCATGTCGCCTCAAAAACTGGTTAATATTTACCAAAAACGGATGCAAATAAAAGAAACCTTTAG
AGATTTAAAAAGCCCCGCTTATGGCTTTGGTTTACGTCATAGCAGCACACGTTATGCGGCGAGGATGGACATACTGCTATTGATAGCATTATTGGTGCAA
CTGGCATTTTGGTGGGTAGGATTATACGGAGAAACACAGCAACTACAGCGGCACTTCCAAGCCAACACGGTAAAGAAAAGGAATGTGCTATCAACAATCA
GGATGGGCAAAGAACTGCTGCGGCGACGACATGACTACCCCATATCAGCAGATGATTTACTTTGTGCTGCGAAGAAACTAGCCCAACTCTCATTGACTCA
TGGTTGTTGGGGCTATGAATTATGAGGGGATCCTACAG
GGGCATCAAGGTGCAAGTGTTAACTACCTTACATCAATCTCTCTATCAACATTGTCCAGAAATCCATCAAAAGCGACTGAATACACTCATGGTCGCCTGC
AAAGCCCTCATCAATGCGGATTGTCTCACCCTAACCCATTTAGGGCGGCACATTGATGGCTCCAGCACTCATACAAAACACTCAATAAAACGCATGGATA
GATTATTGGGCAACCTGCACCTTCACCATGAAAGACTGGCGATTTATCAGTGGCATGCAAAGTGGCTGCTGACTACTCATACTATGCCGACCATACTAGT
GGATTGGTCAGATATGCGTGAAGGTCGTGAGCTGATTGCACTACGCGCCTCTATTGCTATCAAAGGCCGCTCTATCACGCTCTACGAGCGAACATTTCCG
TTAATCCTGCAAGGCACTCAAACTGCGCATAATCAGTTTCTGAATGAACTCAGACAAGTGTTACCTGATAACATTACCCCGCTGATAGTCACTGACGCGG
GCTTCCGTAATCCATGGTTTCGCAAAGTCGAGCAGCTCGGTTGGTATTGGCTGGGTCGTGTCAGAGGATTAAGTGTCTATCGGCCGCATCCTTCTGGTCG
CCAATTTTCACTAAAAGCGCTTTATCCCAAAGCCAGTTGTCGTGCAAAACATGTTGGACGGGTGGCGTTATCGGTAAAGAAACCCTTGTTATGCGAGATG
GTGTTGTTCAGAGCCCCAAGTAAAGGCAGAAAAGGTCAGCGAAGTACGACAACTGACTGTCACCATACGGCGCAATGGACGTATGAACTGACAGCCAAAG
AGCCTTGGGCACTGGTGACCAACTTGACCATAGAAGCCATGTCGCCTCAAAAACTGGTTAATATTTACCAAAAACGGATGCAAATAAAAGAAACCTTTAG
AGATTTAAAAAGCCCCGCTTATGGCTTTGGTTTACGTCATAGCAGCACACGTTATGCGGCGAGGATGGACATACTGCTATTGATAGCATTATTGGTGCAA
CTGGCATTTTGGTGGGTAGGATTATACGGAGAAACACAGCAACTACAGCGGCACTTCCAAGCCAACACGGTAAAGAAAAGGAATGTGCTATCAACAATCA
GGATGGGCAAAGAACTGCTGCGGCGACGACATGACTACCCCATATCAGCAGATGATTTACTTTGTGCTGCGAAGAAACTAGCCCAACTCTCATTGACTCA
TGGTTGTTGGGGCTATGAATTATGAGGGGATCCTACAG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1200 bp | 404 aa | 111 | 1310 | + | No |
Chemistry : DDE
ORF sequence :
MQVLTTLHQSLYQHCPEIHQKRLNTLMVACKALINADCLTLTHLGRHIDGSSTHTKHSIKRMDRLLGNLHLHHERLAIYQWHAKWLLTTHTMPTILVDWS
DMREGRELIALRASIAIKGRSITLYERTFPLILQGTQTAHNQFLNELRQVLPDNITPLIVTDAGFRNPWFRKVEQLGWYWLGRVRGLSVYRPHPSGRQFS
LKALYPKASCRAKHVGRVALSVKKPLLCEMVLFRAPSKGRKGQRSTTTDCHHTAQWTYELTAKEPWALVTNLTIEAMSPQKLVNIYQKRMQIKETFRDLK
SPAYGFGLRHSSTRYAARMDILLLIALLVQLAFWWVGLYGETQQLQRHFQANTVKKRNVLSTIRMGKELLRRRHDYPISADDLLCAAKKLAQLSLTHGCW
GYEL
DMREGRELIALRASIAIKGRSITLYERTFPLILQGTQTAHNQFLNELRQVLPDNITPLIVTDAGFRNPWFRKVEQLGWYWLGRVRGLSVYRPHPSGRQFS
LKALYPKASCRAKHVGRVALSVKKPLLCEMVLFRAPSKGRKGQRSTTTDCHHTAQWTYELTAKEPWALVTNLTIEAMSPQKLVNIYQKRMQIKETFRDLK
SPAYGFGLRHSSTRYAARMDILLLIALLVQLAFWWVGLYGETQQLQRHFQANTVKKRNVLSTIRMGKELLRRRHDYPISADDLLCAAKKLAQLSLTHGCW
GYEL
Blast result :
Comments
There is one copy of ISShes6 encoded in the Shewanella species MR-4 genome. The ISShes6 transposase has 96% identity with ISSod3.
References
1] Romine, M. (2008) Direct submission.