ISShes5
- Family IS4
- Group IS10
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_008321 | ND | Shewanella sp. | Shewanella sp. MR-4 |
DNA section
IS Length : 1318 bp
Ends
IR Length : 12/19
IRL : CTAGCAAATCCCCAGATAAATTCGATGGAATTCAAATAAGTAGACACGCA
IRR : CTGGGGGATCCCCTCATAATTGAGGTCTTCCAGCGTCATGAACTAAGTTT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AGTATGATAA | TGCCGTAGT | ATAGAGCTTT | 9 |
DNA sequence
CTAGCAAATCCCCAGATAAATTCGATGGAATTCAAATAAGTAGACACGCATGATGCTGTTTGATCTAATTAATTTCGCCAAAAACCTACTAGATCCAACA
TCATGCGTGATATCGACATATTACACGATTTACTCAAAAAACAATGCCCTCAAATACATCAAAAACGCCTTAATTCTCTGATGGTTGCTACCGAGTCTTT
ACTCGATGGTAATCAACTCTCGTTAACCCAGTTAGGACGGAACATAACGGGGAATGTTGCACCAAAACACAATATCAAGCGCATTGACCGACTGCTCGGA
AATTTACATGTTATCAAAGATAAGTTCGCTATTTATCAATGGCATGCACAATATCTCTGCGGCGCAAATCCGATGCCCATTATTCTTGTGGATTGGTCTG
ATGTACGCGAGCAACTGCGAATGATTACCTTACGCGCATCAATCAGTGTTAAAGGTCGCTCCATTACTTTGTACGAACGCACTTTTCTGTTTGAAGATTA
CAATGCTCCACGCAGTCATAACGCTTTCCTAGTTGAGCTTGCAAACGTATTGCCGCCAGGATGCTGCCCGCTCATCGTCACCGATGCAGGTTATCGCAAT
ACTTGGTTTAGGGAAGTTGAGCGCCATGGCTGGTTTTGGCTAGGTAGAGTTCGCGGTGACGTCAGTTTTATGCTCAACGGCCAAACATCATGGCAGTCAA
ATAAATCCCTCTATCCTAAAGCGAATTCAACCGCGAAATACATAGGTAGTGTCAAGTTAGCACGCAAGTCTCCGCTACAATGTTACCTGCACTTGTTTAA
AGCTAAACCTAAGCTGCGTAAGGATAAACGCTCTTCTAAGGCTGGACGAAATCACACCGCACAAAAGAGTTACAGCTTAGGAAGTAAAGAGCCTTGGCTA
CTCGCCACCAATCTACCTCCAGATTACTTTGGCCCTTCGAAGGTCGTCGATTTGTATGCTAAACGAATGCAAATTGAAGAAACCTTCCGCGATTTAAAAA
GTCCGCAATATGGCATGGGCCTCAGACAAAGCCGCAGCCGTTGTCCAAAGCGATATGATGTATTGCTGCTCATCGCTATGCTCGCTGAAATCGTGTTGTG
GTGTATTGGGTTAGCGGCACAACACCTTGGATGGCAAAGATATTTTCAAGCCAATACCGTGAGAAAGCGGGCAGTGCTATCAATTGTTAGACTTGGAAAG
GAAGTACGTAAAAGAGACAAATATCCGGTAAAGGAGACAATTTTTCGCTGGGCATTAGTCGAATATATAAACTTAGTTCATGACGCTGGAAGACCTCAAT
TATGAGGGGATCCCCCAG
TCATGCGTGATATCGACATATTACACGATTTACTCAAAAAACAATGCCCTCAAATACATCAAAAACGCCTTAATTCTCTGATGGTTGCTACCGAGTCTTT
ACTCGATGGTAATCAACTCTCGTTAACCCAGTTAGGACGGAACATAACGGGGAATGTTGCACCAAAACACAATATCAAGCGCATTGACCGACTGCTCGGA
AATTTACATGTTATCAAAGATAAGTTCGCTATTTATCAATGGCATGCACAATATCTCTGCGGCGCAAATCCGATGCCCATTATTCTTGTGGATTGGTCTG
ATGTACGCGAGCAACTGCGAATGATTACCTTACGCGCATCAATCAGTGTTAAAGGTCGCTCCATTACTTTGTACGAACGCACTTTTCTGTTTGAAGATTA
CAATGCTCCACGCAGTCATAACGCTTTCCTAGTTGAGCTTGCAAACGTATTGCCGCCAGGATGCTGCCCGCTCATCGTCACCGATGCAGGTTATCGCAAT
ACTTGGTTTAGGGAAGTTGAGCGCCATGGCTGGTTTTGGCTAGGTAGAGTTCGCGGTGACGTCAGTTTTATGCTCAACGGCCAAACATCATGGCAGTCAA
ATAAATCCCTCTATCCTAAAGCGAATTCAACCGCGAAATACATAGGTAGTGTCAAGTTAGCACGCAAGTCTCCGCTACAATGTTACCTGCACTTGTTTAA
AGCTAAACCTAAGCTGCGTAAGGATAAACGCTCTTCTAAGGCTGGACGAAATCACACCGCACAAAAGAGTTACAGCTTAGGAAGTAAAGAGCCTTGGCTA
CTCGCCACCAATCTACCTCCAGATTACTTTGGCCCTTCGAAGGTCGTCGATTTGTATGCTAAACGAATGCAAATTGAAGAAACCTTCCGCGATTTAAAAA
GTCCGCAATATGGCATGGGCCTCAGACAAAGCCGCAGCCGTTGTCCAAAGCGATATGATGTATTGCTGCTCATCGCTATGCTCGCTGAAATCGTGTTGTG
GTGTATTGGGTTAGCGGCACAACACCTTGGATGGCAAAGATATTTTCAAGCCAATACCGTGAGAAAGCGGGCAGTGCTATCAATTGTTAGACTTGGAAAG
GAAGTACGTAAAAGAGACAAATATCCGGTAAAGGAGACAATTTTTCGCTGGGCATTAGTCGAATATATAAACTTAGTTCATGACGCTGGAAGACCTCAAT
TATGAGGGGATCCCCCAG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1203 bp | 400 aa | 103 | 1305 | + | No |
Chemistry : DDE
ORF sequence :
MRDIDILHDLLKKQCPQIHQKRLNSLMVATESLLDGNQLSLTQLGRNITGNVAPKHNIKRIDRLLGNLHVIKDKFAIYQWHAQYLCGANPMPIILVDWSD
VREQLRMITLRASISVKGRSITLYERTFLFEDYNAPRSHNAFLVELANVLPPGCCPLIVTDAGYRNTWFREVERHGWFWLGRVRGDVSFMLNGQTSWQSN
KSLYPKANSTAKYIGSVKLARKSPLQCYLHLFKAKPKLRKDKRSSKAGRNHTAQKSYSLGSKEPWLLATNLPPDYFGPSKVVDLYAKRMQIEETFRDLKS
PQYGMGLRQSRSRCPKRYDVLLLIAMLAEIVLWCIGLAAQHLGWQRYFQANTVRKRAVLSIVRLGKEVRKRDKYPVKETIFRWALVEYINLVHDAGRPQL
VREQLRMITLRASISVKGRSITLYERTFLFEDYNAPRSHNAFLVELANVLPPGCCPLIVTDAGYRNTWFREVERHGWFWLGRVRGDVSFMLNGQTSWQSN
KSLYPKANSTAKYIGSVKLARKSPLQCYLHLFKAKPKLRKDKRSSKAGRNHTAQKSYSLGSKEPWLLATNLPPDYFGPSKVVDLYAKRMQIEETFRDLKS
PQYGMGLRQSRSRCPKRYDVLLLIAMLAEIVLWCIGLAAQHLGWQRYFQANTVRKRAVLSIVRLGKEVRKRDKYPVKETIFRWALVEYINLVHDAGRPQL
Blast result :
Comments
There is one copy of ISShes5 encoded in the Shewanella species MR-4 chromosome. The ISShes5 transposase has 86% identity with ISSde1
References
1] Romine, M. (2008) Direct submission.