ISShes5

  • Family IS4
  • Group IS10
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_008321 ND Shewanella sp.
Shewanella sp. MR-4
DNA section
IS Length : 1318 bp

Ends


IR Length : 12/19

IRL : CTAGCAAATCCCCAGATAAATTCGATGGAATTCAAATAAGTAGACACGCA
IRR : CTGGGGGATCCCCTCATAATTGAGGTCTTCCAGCGTCATGAACTAAGTTT

Insertion site


Left flankDirect repeatRight flankDR Length
AGTATGATAATGCCGTAGTATAGAGCTTT9

DNA sequence

CTAGCAAATCCCCAGATAAATTCGATGGAATTCAAATAAGTAGACACGCATGATGCTGTTTGATCTAATTAATTTCGCCAAAAACCTACTAGATCCAACA
TCATGCGTGATATCGACATATTACACGATTTACTCAAAAAACAATGCCCTCAAATACATCAAAAACGCCTTAATTCTCTGATGGTTGCTACCGAGTCTTT
ACTCGATGGTAATCAACTCTCGTTAACCCAGTTAGGACGGAACATAACGGGGAATGTTGCACCAAAACACAATATCAAGCGCATTGACCGACTGCTCGGA
AATTTACATGTTATCAAAGATAAGTTCGCTATTTATCAATGGCATGCACAATATCTCTGCGGCGCAAATCCGATGCCCATTATTCTTGTGGATTGGTCTG
ATGTACGCGAGCAACTGCGAATGATTACCTTACGCGCATCAATCAGTGTTAAAGGTCGCTCCATTACTTTGTACGAACGCACTTTTCTGTTTGAAGATTA
CAATGCTCCACGCAGTCATAACGCTTTCCTAGTTGAGCTTGCAAACGTATTGCCGCCAGGATGCTGCCCGCTCATCGTCACCGATGCAGGTTATCGCAAT
ACTTGGTTTAGGGAAGTTGAGCGCCATGGCTGGTTTTGGCTAGGTAGAGTTCGCGGTGACGTCAGTTTTATGCTCAACGGCCAAACATCATGGCAGTCAA
ATAAATCCCTCTATCCTAAAGCGAATTCAACCGCGAAATACATAGGTAGTGTCAAGTTAGCACGCAAGTCTCCGCTACAATGTTACCTGCACTTGTTTAA
AGCTAAACCTAAGCTGCGTAAGGATAAACGCTCTTCTAAGGCTGGACGAAATCACACCGCACAAAAGAGTTACAGCTTAGGAAGTAAAGAGCCTTGGCTA
CTCGCCACCAATCTACCTCCAGATTACTTTGGCCCTTCGAAGGTCGTCGATTTGTATGCTAAACGAATGCAAATTGAAGAAACCTTCCGCGATTTAAAAA
GTCCGCAATATGGCATGGGCCTCAGACAAAGCCGCAGCCGTTGTCCAAAGCGATATGATGTATTGCTGCTCATCGCTATGCTCGCTGAAATCGTGTTGTG
GTGTATTGGGTTAGCGGCACAACACCTTGGATGGCAAAGATATTTTCAAGCCAATACCGTGAGAAAGCGGGCAGTGCTATCAATTGTTAGACTTGGAAAG
GAAGTACGTAAAAGAGACAAATATCCGGTAAAGGAGACAATTTTTCGCTGGGCATTAGTCGAATATATAAACTTAGTTCATGACGCTGGAAGACCTCAAT
TATGAGGGGATCCCCCAG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1203 bp400 aa1031305+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MRDIDILHDLLKKQCPQIHQKRLNSLMVATESLLDGNQLSLTQLGRNITGNVAPKHNIKRIDRLLGNLHVIKDKFAIYQWHAQYLCGANPMPIILVDWSD
VREQLRMITLRASISVKGRSITLYERTFLFEDYNAPRSHNAFLVELANVLPPGCCPLIVTDAGYRNTWFREVERHGWFWLGRVRGDVSFMLNGQTSWQSN
KSLYPKANSTAKYIGSVKLARKSPLQCYLHLFKAKPKLRKDKRSSKAGRNHTAQKSYSLGSKEPWLLATNLPPDYFGPSKVVDLYAKRMQIEETFRDLKS
PQYGMGLRQSRSRCPKRYDVLLLIAMLAEIVLWCIGLAAQHLGWQRYFQANTVRKRAVLSIVRLGKEVRKRDKYPVKETIFRWALVEYINLVHDAGRPQL

 

Blast result :
Comments
There is one copy of ISShes5 encoded in the Shewanella species MR-4 chromosome. The ISShes5 transposase has 86% identity with ISSde1
References
1] Romine, M. (2008) Direct submission.