ISDsh4
- Family IS5
- Group IS903
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_009952 | ND | Dinoroseobacter shibae | Dinoroseobacter shibae DFL12 |
DNA section
IS Length : 1049 bp
Ends
IR Length : 13/15
IRL : GGCGTTGTTGCGTAAAGTGCGTCAGGGATTCACTTCACGAATCCCGTAGG
IRR : GGCGTTGTTGCACAATTAGGCCTGAGGGAGAGTTCCCCCTATCCCCGGCG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TGTGACTTTTGG | CCGGGAAGG | TATCATGCATA | 9 |
DNA sequence
GGCGTTGTTGCGTAAAGTGCGTCAGGGATTCACTTCACGAATCCCGTAGGTTAGATCGGCGGCATGCCGAAGCCCGCTCCTCCCCGCTATCGAACAACGA
ACTGGTCTGAGTACAACAAGGCGCTTCGGAGGAGGGGTTCGCTGCTGGTCTGGTTCGACCGCGACATGACGTGGCTGTCTGAACGGACCGGCAAGCGGGG
ACGACCGGACGTATTCTCCGATGCAGCGATCCAGTTCTGCCTGAGTGTGAAGGTGTTGTTTGGCCTGCCGCTTCGCCAAACCTCCGGTATGGTCGCGAGC
CTTTTGGAAATGGCTGACCTCGACTGGCCGGTGCCGGACTTCAGCACGTTGTGCCGGCGCCAAAGAACCTTGAACGTCCAGATCCCCTATCGCCGCGTGG
ATGGACCGCTGAACCTGCTTGTGGATAGCACAGGGATCAAGTTCTTGGGCGACGGAGAGTGGCAGGTTCGCAAGCATGGCACCAGCCGCCGACGTCAATG
GCGCAAGGTTCATCTGGCCATGGACACCACTACATCCGACATCCGAGCGGTGGAGTTCACGTCCAGTCGGGACGGCGACAGCCCCGTCTTGCCTGACCTT
CTGGAACAGATCCCCGAGGACGAACAGATCGGCACCGTGACAGCCGATGGTGCCTACGATACCCGCAGATGTCACGCCGCCATCATTGCCAGAGATGCCG
AAGCAATCATCCCGGTTCGCCGGAACGGACGATTGTGGAAGGAGGACGGTCCTGCCGCCAGGGTCCGCAACGAGATACTACGGGCCTCACAACGCTTCGG
CAGATCTCTCTGGAAGCGATGGAGCGGCTACCACGCCCGAAGCCGTGTCGAGGCCAAGATGCGATGCCTCAAATCATTCGGTGAACGCATTATGGCAAGA
GACCCCGACCGACAAACCGCAGAAATCCACATCCGCATCGCCCTCATGAACCGTTTCTCAGCCCTCGGAAAGGCTGACGTCGTTTGTGAAGCGTGAACCC
GCCGGGGATAGGGGGAACTCTCCCTCAGGCCTAATTGTGCAACAACGCC
ACTGGTCTGAGTACAACAAGGCGCTTCGGAGGAGGGGTTCGCTGCTGGTCTGGTTCGACCGCGACATGACGTGGCTGTCTGAACGGACCGGCAAGCGGGG
ACGACCGGACGTATTCTCCGATGCAGCGATCCAGTTCTGCCTGAGTGTGAAGGTGTTGTTTGGCCTGCCGCTTCGCCAAACCTCCGGTATGGTCGCGAGC
CTTTTGGAAATGGCTGACCTCGACTGGCCGGTGCCGGACTTCAGCACGTTGTGCCGGCGCCAAAGAACCTTGAACGTCCAGATCCCCTATCGCCGCGTGG
ATGGACCGCTGAACCTGCTTGTGGATAGCACAGGGATCAAGTTCTTGGGCGACGGAGAGTGGCAGGTTCGCAAGCATGGCACCAGCCGCCGACGTCAATG
GCGCAAGGTTCATCTGGCCATGGACACCACTACATCCGACATCCGAGCGGTGGAGTTCACGTCCAGTCGGGACGGCGACAGCCCCGTCTTGCCTGACCTT
CTGGAACAGATCCCCGAGGACGAACAGATCGGCACCGTGACAGCCGATGGTGCCTACGATACCCGCAGATGTCACGCCGCCATCATTGCCAGAGATGCCG
AAGCAATCATCCCGGTTCGCCGGAACGGACGATTGTGGAAGGAGGACGGTCCTGCCGCCAGGGTCCGCAACGAGATACTACGGGCCTCACAACGCTTCGG
CAGATCTCTCTGGAAGCGATGGAGCGGCTACCACGCCCGAAGCCGTGTCGAGGCCAAGATGCGATGCCTCAAATCATTCGGTGAACGCATTATGGCAAGA
GACCCCGACCGACAAACCGCAGAAATCCACATCCGCATCGCCCTCATGAACCGTTTCTCAGCCCTCGGAAAGGCTGACGTCGTTTGTGAAGCGTGAACCC
GCCGGGGATAGGGGGAACTCTCCCTCAGGCCTAATTGTGCAACAACGCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
933 bp | 310 aa | 64 | 996 | + | No |
Chemistry : DDE
ORF sequence :
MPKPAPPRYRTTNWSEYNKALRRRGSLLVWFDRDMTWLSERTGKRGRPDVFSDAAIQFCLSVKVLFGLPLRQTSGMVASLLEMADLDWPVPDFSTLCRRQ
RTLNVQIPYRRVDGPLNLLVDSTGIKFLGDGEWQVRKHGTSRRRQWRKVHLAMDTTTSDIRAVEFTSSRDGDSPVLPDLLEQIPEDEQIGTVTADGAYDT
RRCHAAIIARDAEAIIPVRRNGRLWKEDGPAARVRNEILRASQRFGRSLWKRWSGYHARSRVEAKMRCLKSFGERIMARDPDRQTAEIHIRIALMNRFSA
LGKADVVCEA
RTLNVQIPYRRVDGPLNLLVDSTGIKFLGDGEWQVRKHGTSRRRQWRKVHLAMDTTTSDIRAVEFTSSRDGDSPVLPDLLEQIPEDEQIGTVTADGAYDT
RRCHAAIIARDAEAIIPVRRNGRLWKEDGPAARVRNEILRASQRFGRSLWKRWSGYHARSRVEAKMRCLKSFGERIMARDPDRQTAEIHIRIALMNRFSA
LGKADVVCEA
Blast result :
Comments
ISDsh4 is 89% aa similar to ISPpa4.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T., Dalin,E., Tice,H., Pitluck,S., Thompson,L.S., Brettin,T., Bruce,D., Detter,J.C., Han,C., Tapia,R., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E. and Richardson,P. (2007) Direct submission GenBank.