ISfinder Mirror Site

ISHar3

Family IS110
Group IS1111

MGE type ISRelated element(s) :
Isoform Synonym(s)

Accession number	Transposition	Origin	Host
NC_009138	ND	Herminiimonas arsenicoxydans	Herminiimonas arsenicoxydans

DNA section

IS Length : 1387 bp

Ends

IR Length : 13/14

IRL : tactgagATGGACCCGGCACCACCAACAGGATCAAACTAAGGTTTCATCC
IRR : ----tgtATGGACCCGACACCTTTTGCAAGTTCTTTTAGTAACGTTGAAA

Insertion site

Left flank	Direct repeat	Right flank	DR Length
AGCGAGTGTTGATT		TGCATCGAAAACTG	0

DNA sequence

TACTGAGATGGACCCGGCACCACCAACAGGATCAAACTAAGGTTTCATCCAATTTATGTGGAGGTGTGTCATGGATATCGACATTCTCGGAATTGATTTG
GCTAAGCGCGTGTTCCAGTTACACGGTGCGGATCGCAGTGGCTGTGCAAAGTATGGCGCTAAAGTGATGCGCGCAGAGCTTCTGACCACCGTCCGCAAGC
TGTCACCTCGAATTGTGGCCATGGAAGCGTGTAGTTCAGCTCATTACTGGGGGCGGCGCTTCAAGGAAATTGGCATTGAAGTTCGGTTGATCAGTCCGCA
ATACGTCAGCCCCTTCGTCAAGACCAACAAGAATGATGCCAATGATGCAGCCGCCATCGTTGAAGCTGCCAGCAGACCGACCATGCGGTTTGTACCCGTA
AAGTCGATTGAACAACAAGACATGAAAGCCGTTCATCGCGTACGCGAATTATTGGTGCATCAACGTACAGCGTTGATCAACCAAGTCAGAGGTTTGTTAG
GCGAACGAGGTGTGATCATTGCGCAGACGCCTGCAGCGTTCAAACGTGCAATACCCACCGTTCTGGCTCAGTGTGAGGGCGACATGACACCTACCTTCCA
GGCCATTTTGATCGAGCTACTGGAACAGATGCGTATCCTGGAAGAACGTATCGCGCGTACCAATCAATGGATCGCTGCATTTATGAAGAATTCTGTCTTG
TGCCAGAAGATTCAGGCCATCGATGGCGTGGGACCGATTACCGCGACGGCGATGGTTGCAGCCGTGGGTGACGCAAAGGAATTTAAAAACGGCAGGCACT
TGTCCGCATGGCTCGGTTTGGTGCCACGTCAATATTCCTCTGGCGGCAAGTCTCGCCTGCAAGGAATCAGCAAGCGTGGCGATACGTACTTGCGAACGCT
ATTAATTCACGGTGCTCGGGTGGTATTGCGCTACGCGATCGGTAAAACCGATGCGCGCAGCCGATGGCTACAAGATCTGATCGCCCGCCGGGGCTATAAC
CGGGCAGCCGTTGCGCTGGCGAATAAGAACGCGCGCGTCATTCAAGTGTTGTTGAGCCATCCGGATGGTTATCATTTATCGGAAGGGGCAGTTTGATAAA
CTGCTGATTTGCTTCTGTGGTTTTGTTTGTGAAGGAAATAGACCTATTTCTCGTTTTGCGAAGCTTCTTGAAGTGATGACGAAACTGGTAAGACCGATAC
CCACAAACCTGCTTTCGATGCGGACTGTCTTCAGGGACAAGCCGATGATTTGCTAAGGAATGGGTGTGCGAATCTCATCAAGGCTGCGGGCACGTATTTG
ACATGAGCCCACGAGCAAGCCGGATACATGCACGCAAACTGTTTCAACGTTACTAAAAGAACTTGCAAAAGGTGTCGGGTCCATACA

Protein section

ORF number : 1

ORF 1

Length		Begin	End	Strand	Fusion ORF
1026 bp	341 aa	71	1096	+	No

ORF function : Transposase
Chemistry : DEDD

ORF sequence :

MDIDILGIDLAKRVFQLHGADRSGCAKYGAKVMRAELLTTVRKLSPRIVAMEACSSAHYWGRRFKEIGIEVRLISPQYVSPFVKTNKNDANDAAAIVEAA
SRPTMRFVPVKSIEQQDMKAVHRVRELLVHQRTALINQVRGLLGERGVIIAQTPAAFKRAIPTVLAQCEGDMTPTFQAILIELLEQMRILEERIARTNQW
IAAFMKNSVLCQKIQAIDGVGPITATAMVAAVGDAKEFKNGRHLSAWLGLVPRQYSSGGKSRLQGISKRGDTYLRTLLIHGARVVLRYAIGKTDARSRWL
QDLIARRGYNRAAVALANKNARVIQVLLSHPDGYHLSEGAV

Blast result :

Comments

ISHar3 is 71% aa similar to ISPa11.

References

1] Muller,D., Medigue,C., Koechler,S., Barbe,V., Barakat,M., Talla,E., Bonnefoy,V., Krin,E., Arsene-Ploetze,F., Carapito,C., Chandler,M., Cournoyer,B., Cruveiller,S., Dossat,C., Duval,S., Heymann,M., Leize,E., Lieutaud,A., Lievremont,D., Makita,Y., Mangenot,S., Nitschke,W., Ortet,P., Perdrial,N., Schoepp,B., Siguier,P., Simeonova,D.D., Rouy,Z., Segurens,B., Turlin,E., Vallenet,D., Van Dorsselaer,A., Weiss,S., Weissenbach,J., Lett,M.C., Danchin,A. and Bertin,P.N. (2007) PLoS Genet. 3 (4), E53.