ISHar4

  • Family IS30
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_009138 ND Herminiimonas arsenicoxydans
Herminiimonas arsenicoxydans
Janthinobacterium sp
DNA section
IS Length : 1253 bp

Ends


IR Length : 38/41

IRL : GTCCGCTTTTGGCGGCGGTTTCAACCGGTGGATGCAACACACTAAAGGCT
IRR : GTCCGCTTTGGGTGGCGGTTTCAACCGGTGGATGCAACAGATTGATAAAA

Insertion site


Left flankDirect repeatRight flankDR Length
GGCCGGCATCATTAACCATTCACGATAATCTTCG0

DNA sequence

GTCCGCTTTTGGCGGCGGTTTCAACCGGTGGATGCAACACACTAAAGGCTATGCAGATAGCGGGAGTGTGTCATGGAGCGTCGCACAAGGATCATCTATA
CCGATAGTCAGAAGGCTGTAATGTGGGAACGCTGGAAGAAGGGAGAATCTCTTCAGCAGATCGCACAGCTCTTTGACCGCAATCATTCCTCCGTGCAGCG
GATACTTGCAGAAAGTGGCGGCATCAAGCCGCCGCACCGTACCCGCTCTATAAGATCACTAACGCTAGCTGAACGCGAAGAGATCTCTCGATCCATCGTT
GCAGGTCACTCTATGCATACCATCGCCAGAAGTATAGGCAGATCACCATCGACAATCAGTCGCGAACTCAACCGCAACGGCGGTGTTGAAAGCTACCGAG
CAGCTGATGCAGACAAGGCCACGTGGGAACGAGCGCATCGCCCTAAACCTTGTAAGCTCCTGCAGAATCGACCGCTAGCCAGTATGGTTGCCGACAAGCT
GCGCCAGCAATGGTCTCCACAGCAAGTGGCCGGCTGGCTCAAACACATCCATCCCGATGATGAGGAGTTTCAGGTGTCTCACGAAACCATCTACAGAACC
TTATTCATACAGACACGCGGTGCCTTGAAGAAGGAACTGACAGAGCACCTGAGACGCACTCGAGTCATGCCTCGCTCCCTTCATCACACCCAGAAGACAG
ACAATCACGGCAAGATCAGCGATGCCGTATCGATCAGCGAGCGGCCTGCGATGGTGGAAGATCGTGCTGTGCCGGGTCACTGGGAAGGCGATTTGCTATG
CGGAAGTGCGAACAGTCAGATTGCGACGCTAGTGGAGCGCCATACGCGCTATGTCATGCTGGTGAAGATCGATAGGAAAGATACGCAGACGGTGGTCAAT
GCGCTCATCAAGCATGCAGGGAAACTACCGCAAGAACTGTATAAGTCACTGACATGGGATCGTGGCAAAGAACTCGCTGACCACAAGCGCTTCACACTAG
CGACTGATATCCAGGTCTATTTCTGTGATCCAAGAAGCCCGTGGCAACGAGGATCAAACGAAAATACCAACGGACTGTTACGGCAGTACTTCCCTAAAGG
GTTGAATCTCTCTGGCTATTCGCAGGCACAACTCAATGCTGTAGCAAGACGATTGAATGAACGACCAAGAAAAACACTAAACTACGAAACACCGGCTCAA
CGGTTTTATCAATCTGTTGCATCCACCGGTTGAAACCGCCACCCAAAGCGGAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1161 bp386 aa731233+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MERRTRIIYTDSQKAVMWERWKKGESLQQIAQLFDRNHSSVQRILAESGGIKPPHRTRSIRSLTLAEREEISRSIVAGHSMHTIARSIGRSPSTISRELN
RNGGVESYRAADADKATWERAHRPKPCKLLQNRPLASMVADKLRQQWSPQQVAGWLKHIHPDDEEFQVSHETIYRTLFIQTRGALKKELTEHLRRTRVMP
RSLHHTQKTDNHGKISDAVSISERPAMVEDRAVPGHWEGDLLCGSANSQIATLVERHTRYVMLVKIDRKDTQTVVNALIKHAGKLPQELYKSLTWDRGKE
LADHKRFTLATDIQVYFCDPRSPWQRGSNENTNGLLRQYFPKGLNLSGYSQAQLNAVARRLNERPRKTLNYETPAQRFYQSVASTG

 

Blast result :
Comments
ISHar4 is 64% aa similar to IS30.
This sequence was also found in Janthinobacterium sp (CP000269).
References
1] Muller,D., Medigue,C., Koechler,S., Barbe,V., Barakat,M., Talla,E., Bonnefoy,V., Krin,E., Arsene-Ploetze,F., Carapito,C., Chandler,M., Cournoyer,B., Cruveiller,S., Dossat,C., Duval,S., Heymann,M., Leize,E., Lieutaud,A., Lievremont,D., Makita,Y., Mangenot,S., Nitschke,W., Ortet,P., Perdrial,N., Schoepp,B., Siguier,P., Simeonova,D.D., Rouy,Z., Segurens,B., Turlin,E., Vallenet,D., Van Dorsselaer,A., Weiss,S., Weissenbach,J., Lett,M.C., Danchin,A. and Bertin,P.N. (2007) PLoS Genet. 3 (4), E53.