ISJsp1
- Family IS3
- Group IS51
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AB095952 | ND | Janthinobacterium sp. | Janthinobacterium sp. J3 |
DNA section
IS Length : 1312 bp
Ends
IR Length : 23/26
IRL : TGAACCGCCCCGGATTTTGTAGAGGCTCCATTGTTTGAGAGAATGGAGTC
IRR : TGAACCGCCCCGGCTTTCGTGGAGGCCGGTTAGTGTGAGTCAGGCCGGAA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GAGGTAAATA | ACTGGCGCTT | 0 |
DNA sequence
TGAACCGCCCCGGATTTTGTAGAGGCTCCATTGTTTGAGAGAATGGAGTCATGAAGAAGCAACCCAAGTATTCCCCCGAAGTCATCGAGCGCGCCGTGCG
CTTGGTCAGCGAGGCCGCCAGCGAGTACAGCTCGCAGTGGGCGGCGATCGAATCCATCGCAGCCAAGATCGGCTGCACACCTGAAACGCTGCGTCGCTGG
GTACGCCAGCAAGAGCGTGATACCGGCCAGCGTCCAGGACCGACCACTGCCGAAGAAGAGCGCATCAAGACCCTGGAGCGCGAAGTGCGCGAGCTGCGCA
AAGCAAACGAGATCCTGCGTCTGGCGAGTGCGTTTTTCGCCCAGGCGGAGCTCGGCCGCCACTTCAAGCCGTGAGGGCATTTATCGACCAGTACTGCCAT
GCCTACGGTGTCGAGCCGATCTGCAAGGTGATGCAGGTCGCGCCGTCGGGCTACTGGCGTTATGCAGCGCAGCAGCGCAACCCGGCGTTGCGCTGTGCAC
GAGTCCAGCGTGACGATGTGCTGAGCGTCGACATTGAGCGGGTTTGGCAAGCAAACCTGCAGGTCTACGGCGCCGATAAAGTGTGGCGCCAACTTCGACG
TGAGGGAACTGAGGTGGCCCGCTGCACGGTGGAGCGCTTGATGCGCAAGGCCGGCCTGCGTGGCGTCATGCGTGGCAAGGTCGTACGCACGACGGCTGCC
GATACGAAGGCACCGTGCCCGCTCGACCGAGTCAACCGCCAGTTCAACGCACAGCGACCGAACCAGCTGTGGGTCAGCGATTTCACCTACGTCTCGACCT
GGCAGGGCTTCGTCTACGTGGCCTTCGTCATCGACGTCTTCGCCCGGCGCATCGTCGGCTGGCGCGTCAGCTGCTCGATGCGGACCGACTTCGTGCTCGA
CGCTTTGGAGCAGGCGCTGTACGCCCGTCAGCCCGAACGAAACGAGCTCGTCCATCATAGCGACAGGGGCTCGCAATACGTATCCATAAAGTACAGCGAG
CGTCTGGCAGAAGCCGGCATCGAGCCGTCTGTGGGCAGCAAGGGCGACAGTTACGACAATGCCCTGGCCGAGACGATCAATGGGCTCTACAAGGCTGAAC
TGATCCATCGCCGCGCTCCCTGGAAAACGCGTGAGGCCGTCGAGCTGGCCACGCTGGAATGGGTTTCCTGGTTCAACCACCATCGCCTGCTGGAACCGCT
CGGCTATATACCGCCGGCAGAAGCTGAGGCAAACTATTACAAGCAGTTGAGCAGTCAAGCCATTCCGGCCTGACTCACACTAACCGGCCTCCACGAAAGC
CGGGGCGGTTCA
CTTGGTCAGCGAGGCCGCCAGCGAGTACAGCTCGCAGTGGGCGGCGATCGAATCCATCGCAGCCAAGATCGGCTGCACACCTGAAACGCTGCGTCGCTGG
GTACGCCAGCAAGAGCGTGATACCGGCCAGCGTCCAGGACCGACCACTGCCGAAGAAGAGCGCATCAAGACCCTGGAGCGCGAAGTGCGCGAGCTGCGCA
AAGCAAACGAGATCCTGCGTCTGGCGAGTGCGTTTTTCGCCCAGGCGGAGCTCGGCCGCCACTTCAAGCCGTGAGGGCATTTATCGACCAGTACTGCCAT
GCCTACGGTGTCGAGCCGATCTGCAAGGTGATGCAGGTCGCGCCGTCGGGCTACTGGCGTTATGCAGCGCAGCAGCGCAACCCGGCGTTGCGCTGTGCAC
GAGTCCAGCGTGACGATGTGCTGAGCGTCGACATTGAGCGGGTTTGGCAAGCAAACCTGCAGGTCTACGGCGCCGATAAAGTGTGGCGCCAACTTCGACG
TGAGGGAACTGAGGTGGCCCGCTGCACGGTGGAGCGCTTGATGCGCAAGGCCGGCCTGCGTGGCGTCATGCGTGGCAAGGTCGTACGCACGACGGCTGCC
GATACGAAGGCACCGTGCCCGCTCGACCGAGTCAACCGCCAGTTCAACGCACAGCGACCGAACCAGCTGTGGGTCAGCGATTTCACCTACGTCTCGACCT
GGCAGGGCTTCGTCTACGTGGCCTTCGTCATCGACGTCTTCGCCCGGCGCATCGTCGGCTGGCGCGTCAGCTGCTCGATGCGGACCGACTTCGTGCTCGA
CGCTTTGGAGCAGGCGCTGTACGCCCGTCAGCCCGAACGAAACGAGCTCGTCCATCATAGCGACAGGGGCTCGCAATACGTATCCATAAAGTACAGCGAG
CGTCTGGCAGAAGCCGGCATCGAGCCGTCTGTGGGCAGCAAGGGCGACAGTTACGACAATGCCCTGGCCGAGACGATCAATGGGCTCTACAAGGCTGAAC
TGATCCATCGCCGCGCTCCCTGGAAAACGCGTGAGGCCGTCGAGCTGGCCACGCTGGAATGGGTTTCCTGGTTCAACCACCATCGCCTGCTGGAACCGCT
CGGCTATATACCGCCGGCAGAAGCTGAGGCAAACTATTACAAGCAGTTGAGCAGTCAAGCCATTCCGGCCTGACTCACACTAACCGGCCTCCACGAAAGC
CGGGGCGGTTCA
Recoding section
- Recoding by frameshift
- Frame
- Type
- Experimentally demonstrated
Stimulators :
- Shine-Dalgarno sequence :
- Secondary structure :
Recoding motif :
Protein section
ORF number : 3
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
324 bp | 107 aa | 51 | 374 | + | No |
Description : First part of the transposase
ORF sequence :
MKKQPKYSPEVIERAVRLVSEAASEYSSQWAAIESIAAKIGCTPETLRRWVRQQERDTGQRPGPTTAEEERIKTLEREVRELRKANEILRLASAFFAQAE
LGRHFKP
LGRHFKP
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1053 bp | 350 aa | 221 | 1273 | + | No |
Description : Second part of the transposase
ORF sequence :
YRPASRTDHCRRRAHQDPGARSARAAQSKRDPASGECVFRPGGARPPLQAVRAFIDQYCHAYGVEPICKVMQVAPSGYWRYAAQQRNPALRCARVQRDDV
LSVDIERVWQANLQVYGADKVWRQLRREGTEVARCTVERLMRKAGLRGVMRGKVVRTTAADTKAPCPLDRVNRQFNAQRPNQLWVSDFTYVSTWQGFVYV
AFVIDVFARRIVGWRVSCSMRTDFVLDALEQALYARQPERNELVHHSDRGSQYVSIKYSERLAEAGIEPSVGSKGDSYDNALAETINGLYKAELIHRRAP
WKTREAVELATLEWVSWFNHHRLLEPLGYIPPAEAEANYYKQLSSQAIPA
LSVDIERVWQANLQVYGADKVWRQLRREGTEVARCTVERLMRKAGLRGVMRGKVVRTTAADTKAPCPLDRVNRQFNAQRPNQLWVSDFTYVSTWQGFVYV
AFVIDVFARRIVGWRVSCSMRTDFVLDALEQALYARQPERNELVHHSDRGSQYVSIKYSERLAEAGIEPSVGSKGDSYDNALAETINGLYKAELIHRRAP
WKTREAVELATLEWVSWFNHHRLLEPLGYIPPAEAEANYYKQLSSQAIPA
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1223 bp | 407 aa | 51 | 1273 | + | Yes |
Chemistry : DDE
ORF sequence :
MKKQPKYSPEVIERAVRLVSEAASEYSSQWAAIESIAAKIGCTPETLRRWVRQQERDTGQRPGPTTAEEERIKTLEREVRELRKANEILRLASAFFRPGG
ARPPLQAVRAFIDQYCHAYGVEPICKVMQVAPSGYWRYAAQQRNPALRCARVQRDDVLSVDIERVWQANLQVYGADKVWRQLRREGTEVARCTVERLMRK
AGLRGVMRGKVVRTTAADTKAPCPLDRVNRQFNAQRPNQLWVSDFTYVSTWQGFVYVAFVIDVFARRIVGWRVSCSMRTDFVLDALEQALYARQPERNEL
VHHSDRGSQYVSIKYSERLAEAGIEPSVGSKGDSYDNALAETINGLYKAELIHRRAPWKTREAVELATLEWVSWFNHHRLLEPLGYIPPAEAEANYYKQL
SSQAIPA
ARPPLQAVRAFIDQYCHAYGVEPICKVMQVAPSGYWRYAAQQRNPALRCARVQRDDVLSVDIERVWQANLQVYGADKVWRQLRREGTEVARCTVERLMRK
AGLRGVMRGKVVRTTAADTKAPCPLDRVNRQFNAQRPNQLWVSDFTYVSTWQGFVYVAFVIDVFARRIVGWRVSCSMRTDFVLDALEQALYARQPERNEL
VHHSDRGSQYVSIKYSERLAEAGIEPSVGSKGDSYDNALAETINGLYKAELIHRRAPWKTREAVELATLEWVSWFNHHRLLEPLGYIPPAEAEANYYKQL
SSQAIPA
Blast result :
Comments
ISJsp1 is 86% aa similar to IS401. The third ORF is a putative ORFAB transposase reconstructed in silico by possible -1 frameshift.
References
1] Inoue,K., Widada,J., Nakai,S., Endoh,T., Urata,M., Ashikawa,Y., Shintani,M., Saiki,Y., Yoshida,T., Habe,H., Omori,T. and Nojiri,H.(2004) Biosci. Biotechnol. Biochem. 68 (7), 1467-1480