ISJsp2
- Family IS5
- Group IS903
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AB095952 | ND | Janthinobacterium sp. | Janthinobacterium sp. J3 |
DNA section
IS Length : 1045 bp
Ends
IR Length : 17/18
IRL : GGCTTTGTTGCGCAAATCAGGCTCGACCAGCGTACACCCGCAGGTCTGGT
IRR : GGCTTTGTTGAGCAAATCGAGTGAAGGCCGAGCTGACGCTGTTTGTAATC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GCGTTTTGGT | ACTCGACTG | TGGACAAGTTTC | 9 |
DNA sequence
GGCTTTGTTGCGCAAATCAGGCTCGACCAGCGTACACCCGCAGGTCTGGTAGCCTGAGCGGATGAAACCAGCTCCACAGAAGTACCGCACGACCAATTGG
AAAACGTACAACGAAGCCCTCAAGTCACGCGGTTCCCTGCTGATCTGGCTTGATCCGAAGATGAACTGGCACGGCCAGCCGAGCGGCAAGCGCGGGCGCA
GCCAGACGTTCAGCGACGAGGCGATCCAGTTCTGCCTGAGCATCAAGTGCCTCTTCAATTTACCACTACGGCAGGCCATGGGCATGGCGCAAAGCCTGCT
GCGCTTGGCTGGACTTGACTGGCCGGTGCCGGACTACAGCACGGTAAGTCGGCGGCAAAAAACACTACAGGTGGCCATCGGCGCCGTGCCGACCACGACA
GGGTTGCATCTGCTGGTGGACAGCACGGGCATCAAGATGTTGGGCGAAGGCGAATGGAAGACGAAAAAGCATGGCGCGGACTATCGCCGCCAGTGGCGCA
AGGTGCACCTCGGGATCGACGCGTCCACGCTTGAGATCCGGGCGATGGAAGTAACCGACAACAGTATCGGCGACGCGCCTGTCCTGCCAGCGCTGCTGGA
TCAAATTCCAGCCGACGAGTCCATCGCCAGCGTTAGTGGCGATGGCGCTTACGACACGAAGGACTGTCACGAGGCGATCGCCTTGCGCGCCGCCCATGCC
ATCATCCCAACTCGCAAGAACGCCAAGCCCTGGAAGGCGAACCGCTGCGGTGCCGATGCACGCAACGAGATCTTGCACACGACGCGCAGGCTGGGTCGGG
CGATCTGGAAAAAGTGGAGCGGCTACCACCGGCGCAGTCTTGTCGAAACCAAAATGCGCTGCTTCAAGCTGTTGGGCGAACGGGTCATGGCACGCGACTT
CGATCGTCAGGTGGCCGAATTGCAGATACGTGCTGCCGTGCTCAACCGCTTCACTCGGCTGGGTACCCCGGTCACGGTCCCAGTGTTATAAAACTGATTA
CAAACAGCGTCAGCTCGGCCTTCACTCGATTTGCTCAACAAAGCC
AAAACGTACAACGAAGCCCTCAAGTCACGCGGTTCCCTGCTGATCTGGCTTGATCCGAAGATGAACTGGCACGGCCAGCCGAGCGGCAAGCGCGGGCGCA
GCCAGACGTTCAGCGACGAGGCGATCCAGTTCTGCCTGAGCATCAAGTGCCTCTTCAATTTACCACTACGGCAGGCCATGGGCATGGCGCAAAGCCTGCT
GCGCTTGGCTGGACTTGACTGGCCGGTGCCGGACTACAGCACGGTAAGTCGGCGGCAAAAAACACTACAGGTGGCCATCGGCGCCGTGCCGACCACGACA
GGGTTGCATCTGCTGGTGGACAGCACGGGCATCAAGATGTTGGGCGAAGGCGAATGGAAGACGAAAAAGCATGGCGCGGACTATCGCCGCCAGTGGCGCA
AGGTGCACCTCGGGATCGACGCGTCCACGCTTGAGATCCGGGCGATGGAAGTAACCGACAACAGTATCGGCGACGCGCCTGTCCTGCCAGCGCTGCTGGA
TCAAATTCCAGCCGACGAGTCCATCGCCAGCGTTAGTGGCGATGGCGCTTACGACACGAAGGACTGTCACGAGGCGATCGCCTTGCGCGCCGCCCATGCC
ATCATCCCAACTCGCAAGAACGCCAAGCCCTGGAAGGCGAACCGCTGCGGTGCCGATGCACGCAACGAGATCTTGCACACGACGCGCAGGCTGGGTCGGG
CGATCTGGAAAAAGTGGAGCGGCTACCACCGGCGCAGTCTTGTCGAAACCAAAATGCGCTGCTTCAAGCTGTTGGGCGAACGGGTCATGGCACGCGACTT
CGATCGTCAGGTGGCCGAATTGCAGATACGTGCTGCCGTGCTCAACCGCTTCACTCGGCTGGGTACCCCGGTCACGGTCCCAGTGTTATAAAACTGATTA
CAAACAGCGTCAGCTCGGCCTTCACTCGATTTGCTCAACAAAGCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
930 bp | 309 aa | 62 | 991 | + | No |
Chemistry : DDE
ORF sequence :
MKPAPQKYRTTNWKTYNEALKSRGSLLIWLDPKMNWHGQPSGKRGRSQTFSDEAIQFCLSIKCLFNLPLRQAMGMAQSLLRLAGLDWPVPDYSTVSRRQK
TLQVAIGAVPTTTGLHLLVDSTGIKMLGEGEWKTKKHGADYRRQWRKVHLGIDASTLEIRAMEVTDNSIGDAPVLPALLDQIPADESIASVSGDGAYDTK
DCHEAIALRAAHAIIPTRKNAKPWKANRCGADARNEILHTTRRLGRAIWKKWSGYHRRSLVETKMRCFKLLGERVMARDFDRQVAELQIRAAVLNRFTRL
GTPVTVPVL
TLQVAIGAVPTTTGLHLLVDSTGIKMLGEGEWKTKKHGADYRRQWRKVHLGIDASTLEIRAMEVTDNSIGDAPVLPALLDQIPADESIASVSGDGAYDTK
DCHEAIALRAAHAIIPTRKNAKPWKANRCGADARNEILHTTRRLGRAIWKKWSGYHRRSLVETKMRCFKLLGERVMARDFDRQVAELQIRAAVLNRFTRL
GTPVTVPVL
Blast result :
Comments
ISJsp2 is 89% aa similar to IS401.
References
1] Inoue,K., Widada,J., Nakai,S., Endoh,T., Urata,M., Ashikawa,Y., Shintani,M., Saiki,Y., Yoshida,T., Habe,H., Omori,T. and Nojiri,H.(2004) Biosci. Biotechnol. Biochem. 68 (7), 1467-1480