ISJsp2

  • Family IS5
  • Group IS903
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AB095952 ND Janthinobacterium sp.
Janthinobacterium sp. J3
DNA section
IS Length : 1045 bp

Ends


IR Length : 17/18

IRL : GGCTTTGTTGCGCAAATCAGGCTCGACCAGCGTACACCCGCAGGTCTGGT
IRR : GGCTTTGTTGAGCAAATCGAGTGAAGGCCGAGCTGACGCTGTTTGTAATC

Insertion site


Left flankDirect repeatRight flankDR Length
GCGTTTTGGTACTCGACTGTGGACAAGTTTC9

DNA sequence

GGCTTTGTTGCGCAAATCAGGCTCGACCAGCGTACACCCGCAGGTCTGGTAGCCTGAGCGGATGAAACCAGCTCCACAGAAGTACCGCACGACCAATTGG
AAAACGTACAACGAAGCCCTCAAGTCACGCGGTTCCCTGCTGATCTGGCTTGATCCGAAGATGAACTGGCACGGCCAGCCGAGCGGCAAGCGCGGGCGCA
GCCAGACGTTCAGCGACGAGGCGATCCAGTTCTGCCTGAGCATCAAGTGCCTCTTCAATTTACCACTACGGCAGGCCATGGGCATGGCGCAAAGCCTGCT
GCGCTTGGCTGGACTTGACTGGCCGGTGCCGGACTACAGCACGGTAAGTCGGCGGCAAAAAACACTACAGGTGGCCATCGGCGCCGTGCCGACCACGACA
GGGTTGCATCTGCTGGTGGACAGCACGGGCATCAAGATGTTGGGCGAAGGCGAATGGAAGACGAAAAAGCATGGCGCGGACTATCGCCGCCAGTGGCGCA
AGGTGCACCTCGGGATCGACGCGTCCACGCTTGAGATCCGGGCGATGGAAGTAACCGACAACAGTATCGGCGACGCGCCTGTCCTGCCAGCGCTGCTGGA
TCAAATTCCAGCCGACGAGTCCATCGCCAGCGTTAGTGGCGATGGCGCTTACGACACGAAGGACTGTCACGAGGCGATCGCCTTGCGCGCCGCCCATGCC
ATCATCCCAACTCGCAAGAACGCCAAGCCCTGGAAGGCGAACCGCTGCGGTGCCGATGCACGCAACGAGATCTTGCACACGACGCGCAGGCTGGGTCGGG
CGATCTGGAAAAAGTGGAGCGGCTACCACCGGCGCAGTCTTGTCGAAACCAAAATGCGCTGCTTCAAGCTGTTGGGCGAACGGGTCATGGCACGCGACTT
CGATCGTCAGGTGGCCGAATTGCAGATACGTGCTGCCGTGCTCAACCGCTTCACTCGGCTGGGTACCCCGGTCACGGTCCCAGTGTTATAAAACTGATTA
CAAACAGCGTCAGCTCGGCCTTCACTCGATTTGCTCAACAAAGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
930 bp309 aa62991+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MKPAPQKYRTTNWKTYNEALKSRGSLLIWLDPKMNWHGQPSGKRGRSQTFSDEAIQFCLSIKCLFNLPLRQAMGMAQSLLRLAGLDWPVPDYSTVSRRQK
TLQVAIGAVPTTTGLHLLVDSTGIKMLGEGEWKTKKHGADYRRQWRKVHLGIDASTLEIRAMEVTDNSIGDAPVLPALLDQIPADESIASVSGDGAYDTK
DCHEAIALRAAHAIIPTRKNAKPWKANRCGADARNEILHTTRRLGRAIWKKWSGYHRRSLVETKMRCFKLLGERVMARDFDRQVAELQIRAAVLNRFTRL
GTPVTVPVL

 

Blast result :
Comments
ISJsp2 is 89% aa similar to IS401.
References
1] Inoue,K., Widada,J., Nakai,S., Endoh,T., Urata,M., Ashikawa,Y., Shintani,M., Saiki,Y., Yoshida,T., Habe,H., Omori,T. and Nojiri,H.(2004) Biosci. Biotechnol. Biochem. 68 (7), 1467-1480