ISLve2

  • Family IS5
  • Group IS903
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_AAMS01000001 ND Loktanella vestfoldensis
Loktanella vestfoldensis SKA53
DNA section
IS Length : 1054 bp

Ends


IR Length : 19/20

IRL : GGCTTTGTTGCACAAATCCTATCATGAGGGGATTCACTGTGTGAATCCAG
IRR : GGCTTTGTTGCACAAACCCTCTTGGGGACGTGTTTCCCCTGACTCCGGAC

Insertion site


Left flankDirect repeatRight flankDR Length
GGCCGGGCGGGGCGCGGGGTATATCA0

DNA sequence

GGCTTTGTTGCACAAATCCTATCATGAGGGGATTCACTGTGTGAATCCAGCGTGGTAGCGGGTTGCGATGAGCAGCTGGACACCGACGACGTACAAGACC
CGGAACTGGGCAGAGTACAATCATTGACTTAAGCAGCGGGGATCGCTGTCGATCTGGTTTGATCCAGAGATGTCATGGGAAGCAGAGGCCTCTGGACGCC
GTGGGCGTCAGAAAACCTACAGCGATGCAGCCATCCAAGCCTGTTTGACCCTCAAGGTACTATTCGGCTTGCCCTTGCGGCAGACGACCGGGTTTGTGGA
GAGCTTGCTGAAACGGGTTGAGCTGGACTGGTCGGTGCCGGACTTCAGTACCCTGTGTCGGCGTCAGAAGACGTTGTCCGTCGCCATCCCTTACAAGGGA
TCAGCAGGACCACTTCACCTGCTTGTCGACAGCACAGGCATTAAGGCTGAAGGCGAAGGAGAGTGGAATGCCCGCAAGCATGGCGGTCCAAAGCGCCGCT
TGTGGCGCAAGATCCACATTGGGGTCGATGAGGAAACGCTGGAGATCCGCGCGATCGAGGTGACGAGTAGCAGCATTGGGGACGCCCCGATGCTGCCAGA
CTTGCTCAGCCAGATCCCACCTGATCAGGAGCTTGGCAGCGTCACGGCGGACGGAGCATATGATACACGCAAATGCCATGATGCGATTGCGGCACGCAAT
GCGCACGCCGTCATACCCCCGCGCAAGAACGCTAAGATGTGGAAACCTGACACAGCAGGAGCGAAAGCGCGTAACGAAGCAGTGCGATCCTCAAAGTATC
TGGGTCGTGCTTTGTGGCGAAACCTGACTGGATATCACCGCCGGAGCCGCGTTGAGACAAAAATGCATTGTGTGAAACTACTCGGTCAGCGCCTCTCGGC
GCGGGACTTCGATCGCCAGGTTGCAGAGATCCAGATCCGTGCCGCGATCCTAAACGGCTTCACAGCTATTGGCATACCGCGTACGGTGGCCGTAGGCTAA
ATCCGTCCGGAGTCAGGGGAAACACGTCCCCAAGAGGGTTTGTGCAACAAAGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
831 bp276 aa1701000+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSWEAEASGRRGRQKTYSDAAIQACLTLKVLFGLPLRQTTGFVESLLKRVELDWSVPDFSTLCRRQKTLSVAIPYKGSAGPLHLLVDSTGIKAEGEGEWN
ARKHGGPKRRLWRKIHIGVDEETLEIRAIEVTSSSIGDAPMLPDLLSQIPPDQELGSVTADGAYDTRKCHDAIAARNAHAVIPPRKNAKMWKPDTAGAKA
RNEAVRSSKYLGRALWRNLTGYHRRSRVETKMHCVKLLGQRLSARDFDRQVAEIQIRAAILNGFTAIGIPRTVAVG

 

Blast result :
Comments
ISLve2 is 89% aa similar to ISRusp1.
References
1] Hagstrom,A., Ferriera,S., Johnson,J., Kravitz,S., Halpern,A., Remington,K., Beeson,K., Tran,B., Rogers,Y.-H., Friedman,R. and Venter,J.C. (2006) Direct submission GenBank.