ISRssp5
- Family IS5
- Group IS903
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_AATQ01000025 | ND | Roseovarius sp. | Roseovarius sp. HTCC2601 |
DNA section
IS Length : 1047 bp
Ends
IR Length : 16/18
IRL : GGCGTTGTTGCGCAAATCTAGGGGATTCATCTCGTGAATCCAGCATGCTA
IRR : GGCGTTGTTGGACAAATCAGCTGGTGACCGCAGTCCCCCTTTCCCCAGAC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GCTGTCTTTGCC | GGTCGCATT | GTCGCTGTCCTGT | 9 |
DNA sequence
GGCGTTGTTGCGCAAATCTAGGGGATTCATCTCGTGAATCCAGCATGCTAGCCGGGCAGCATGAGCAGACCTCCGAAGCCGACCTACAAGACCACCAACT
GGCGCAGCTACAATCAGGCGCTGAGGCGGCGCGGATCGCTGACCGTCTGGTTCGATCCCTTGATGCAATGGAAAGCGGCGCCGTCCGGGCGGCGCGGTCG
CCAGCAAACCTATAGCGACGCCGCAATCCAGGCCTGTCTCACCCTCAAGGTCCTCCTCGGGCTGCCGCTCCGCCAGACGACGGGGTTCGTGGCGAGCCTG
CTGGAACTGTCCGGGCTGGGGTGGTCCGTTCCTGACTTCAGCACGCTGTCACGTCGTCAGAAGACCTTGGACGTCAGCATCCCGTATCGCGGCTCCAAGG
GGGCGCTTCACCTGCTAGTAGACAGCACCGGCATCAAGGTGGAGGGCGAAGGCGAGTGGCACACGCGCAAGCATGGCGGCTCGAAACGGCGTGTGTGGCG
CAAGATCCACCTCGGGATCGACGAGCAAACATTGGAGATCCGGGCCATCGAGGTCACGTCCAGCAATGTCGGCGATGCGCCGATGCTGCCAGATCTGCTC
GCCCAGATTCCGGCGGAGGAGGAGATCGCCACGGTGACGGCCGACGGCGCCTACGACACGCGCGCCTGCCACGATGCCATCGCCGCCCGTGACGCGGCAG
CGGTCATTCCGCCGAGGCGGACCGCGAGGCCATGGGAGCCGGACACTGCCGGAGCCCGGGCGCGCAACGAAATCCTGCGGGCGTCAAAGCACCTGGGCAG
GGCGCTCTGGCGGAATTGGAGCGGGTACCACCGCCGCAGCCGGGTCGAAACGAAAATGAACTGCGTGAAGCAGCTCGGCCAGCGGCTGATGTCACGGGAC
TTCGACCGCCAAGTGGCAGAGGTCCAGATCCGCGCGGCGGTCATGAACCGCTTCACGGCTCTCGGCATCCCGATGACCGTGGCCGCAGGATAGGTGTGTC
TGGGGAAAGGGGGACTGCGGTCACCAGCTGATTTGTCCAACAACGCC
GGCGCAGCTACAATCAGGCGCTGAGGCGGCGCGGATCGCTGACCGTCTGGTTCGATCCCTTGATGCAATGGAAAGCGGCGCCGTCCGGGCGGCGCGGTCG
CCAGCAAACCTATAGCGACGCCGCAATCCAGGCCTGTCTCACCCTCAAGGTCCTCCTCGGGCTGCCGCTCCGCCAGACGACGGGGTTCGTGGCGAGCCTG
CTGGAACTGTCCGGGCTGGGGTGGTCCGTTCCTGACTTCAGCACGCTGTCACGTCGTCAGAAGACCTTGGACGTCAGCATCCCGTATCGCGGCTCCAAGG
GGGCGCTTCACCTGCTAGTAGACAGCACCGGCATCAAGGTGGAGGGCGAAGGCGAGTGGCACACGCGCAAGCATGGCGGCTCGAAACGGCGTGTGTGGCG
CAAGATCCACCTCGGGATCGACGAGCAAACATTGGAGATCCGGGCCATCGAGGTCACGTCCAGCAATGTCGGCGATGCGCCGATGCTGCCAGATCTGCTC
GCCCAGATTCCGGCGGAGGAGGAGATCGCCACGGTGACGGCCGACGGCGCCTACGACACGCGCGCCTGCCACGATGCCATCGCCGCCCGTGACGCGGCAG
CGGTCATTCCGCCGAGGCGGACCGCGAGGCCATGGGAGCCGGACACTGCCGGAGCCCGGGCGCGCAACGAAATCCTGCGGGCGTCAAAGCACCTGGGCAG
GGCGCTCTGGCGGAATTGGAGCGGGTACCACCGCCGCAGCCGGGTCGAAACGAAAATGAACTGCGTGAAGCAGCTCGGCCAGCGGCTGATGTCACGGGAC
TTCGACCGCCAAGTGGCAGAGGTCCAGATCCGCGCGGCGGTCATGAACCGCTTCACGGCTCTCGGCATCCCGATGACCGTGGCCGCAGGATAGGTGTGTC
TGGGGAAAGGGGGACTGCGGTCACCAGCTGATTTGTCCAACAACGCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
933 bp | 310 aa | 61 | 993 | + | No |
Chemistry : DDE
ORF sequence :
MSRPPKPTYKTTNWRSYNQALRRRGSLTVWFDPLMQWKAAPSGRRGRQQTYSDAAIQACLTLKVLLGLPLRQTTGFVASLLELSGLGWSVPDFSTLSRRQ
KTLDVSIPYRGSKGALHLLVDSTGIKVEGEGEWHTRKHGGSKRRVWRKIHLGIDEQTLEIRAIEVTSSNVGDAPMLPDLLAQIPAEEEIATVTADGAYDT
RACHDAIAARDAAAVIPPRRTARPWEPDTAGARARNEILRASKHLGRALWRNWSGYHRRSRVETKMNCVKQLGQRLMSRDFDRQVAEVQIRAAVMNRFTA
LGIPMTVAAG
KTLDVSIPYRGSKGALHLLVDSTGIKVEGEGEWHTRKHGGSKRRVWRKIHLGIDEQTLEIRAIEVTSSNVGDAPMLPDLLAQIPAEEEIATVTADGAYDT
RACHDAIAARDAAAVIPPRRTARPWEPDTAGARARNEILRASKHLGRALWRNWSGYHRRSRVETKMNCVKQLGQRLMSRDFDRQVAEVQIRAAVMNRFTA
LGIPMTVAAG
Blast result :
Comments
ISRssp5 is 86% aa similar to ISRusp1.
References
1] Giovannoni,S.J., Ferriera,S., Johnson,J., Kravitz,S., Halpern,A., Remington,K., Beeson,K., Tran,B., Rogers,Y.-H., Friedman,R. and Venter,J.C. (2006) Direct submission GenBank.