ISRssp5

  • Family IS5
  • Group IS903
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_AATQ01000025 ND Roseovarius sp.
Roseovarius sp. HTCC2601
DNA section
IS Length : 1047 bp

Ends


IR Length : 16/18

IRL : GGCGTTGTTGCGCAAATCTAGGGGATTCATCTCGTGAATCCAGCATGCTA
IRR : GGCGTTGTTGGACAAATCAGCTGGTGACCGCAGTCCCCCTTTCCCCAGAC

Insertion site


Left flankDirect repeatRight flankDR Length
GCTGTCTTTGCCGGTCGCATTGTCGCTGTCCTGT9

DNA sequence

GGCGTTGTTGCGCAAATCTAGGGGATTCATCTCGTGAATCCAGCATGCTAGCCGGGCAGCATGAGCAGACCTCCGAAGCCGACCTACAAGACCACCAACT
GGCGCAGCTACAATCAGGCGCTGAGGCGGCGCGGATCGCTGACCGTCTGGTTCGATCCCTTGATGCAATGGAAAGCGGCGCCGTCCGGGCGGCGCGGTCG
CCAGCAAACCTATAGCGACGCCGCAATCCAGGCCTGTCTCACCCTCAAGGTCCTCCTCGGGCTGCCGCTCCGCCAGACGACGGGGTTCGTGGCGAGCCTG
CTGGAACTGTCCGGGCTGGGGTGGTCCGTTCCTGACTTCAGCACGCTGTCACGTCGTCAGAAGACCTTGGACGTCAGCATCCCGTATCGCGGCTCCAAGG
GGGCGCTTCACCTGCTAGTAGACAGCACCGGCATCAAGGTGGAGGGCGAAGGCGAGTGGCACACGCGCAAGCATGGCGGCTCGAAACGGCGTGTGTGGCG
CAAGATCCACCTCGGGATCGACGAGCAAACATTGGAGATCCGGGCCATCGAGGTCACGTCCAGCAATGTCGGCGATGCGCCGATGCTGCCAGATCTGCTC
GCCCAGATTCCGGCGGAGGAGGAGATCGCCACGGTGACGGCCGACGGCGCCTACGACACGCGCGCCTGCCACGATGCCATCGCCGCCCGTGACGCGGCAG
CGGTCATTCCGCCGAGGCGGACCGCGAGGCCATGGGAGCCGGACACTGCCGGAGCCCGGGCGCGCAACGAAATCCTGCGGGCGTCAAAGCACCTGGGCAG
GGCGCTCTGGCGGAATTGGAGCGGGTACCACCGCCGCAGCCGGGTCGAAACGAAAATGAACTGCGTGAAGCAGCTCGGCCAGCGGCTGATGTCACGGGAC
TTCGACCGCCAAGTGGCAGAGGTCCAGATCCGCGCGGCGGTCATGAACCGCTTCACGGCTCTCGGCATCCCGATGACCGTGGCCGCAGGATAGGTGTGTC
TGGGGAAAGGGGGACTGCGGTCACCAGCTGATTTGTCCAACAACGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
933 bp310 aa61993+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSRPPKPTYKTTNWRSYNQALRRRGSLTVWFDPLMQWKAAPSGRRGRQQTYSDAAIQACLTLKVLLGLPLRQTTGFVASLLELSGLGWSVPDFSTLSRRQ
KTLDVSIPYRGSKGALHLLVDSTGIKVEGEGEWHTRKHGGSKRRVWRKIHLGIDEQTLEIRAIEVTSSNVGDAPMLPDLLAQIPAEEEIATVTADGAYDT
RACHDAIAARDAAAVIPPRRTARPWEPDTAGARARNEILRASKHLGRALWRNWSGYHRRSRVETKMNCVKQLGQRLMSRDFDRQVAEVQIRAAVMNRFTA
LGIPMTVAAG

 

Blast result :
Comments
ISRssp5 is 86% aa similar to ISRusp1.
References
1] Giovannoni,S.J., Ferriera,S., Johnson,J., Kravitz,S., Halpern,A., Remington,K., Beeson,K., Tran,B., Rogers,Y.-H., Friedman,R. and Venter,J.C. (2006) Direct submission GenBank.