ISRusp1

  • Family IS5
  • Group IS903
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_004574 ND Ruegeria sp.
Ruegeria sp. PR1b plasmid pSD25
DNA section
IS Length : 1051 bp

Ends


IR Length : 19

IRL : GGCTTTGTTGCGCAAAGGCCGGGTGAGGGATTCATCTCGTGAATCCAGCG
IRR : GGCTTTGTTGCGCAAAGGCGTGAACCCCGGACTTCCCCTTTCCCCGGACG

Insertion site


Left flankDirect repeatRight flankDR Length
CGAGGCGTTTGCCCCGCATCCCTGAGAATGATAAAGCGG0

DNA sequence

GGCTTTGTTGCGCAAAGGCCGGGTGAGGGATTCATCTCGTGAATCCAGCGTGGTAGCTGGCCTGCATGAGCAGACCCATCCCGCCGAGCTACAAGACCAA
GAACTGGCCGGCCTACAACGAAGCACTGAAGCAGCGCGGCTCCCTGACGATCTGGTTCGATCCGGACATGGCCTGGGTGCCGCCGCCGACCGGTAAGCGA
GGCCGGCAGCCGCAATATAGCGATGCCGCGATCCAGACCTGCCTGACGATGAAGGTCCTCTTTGGTATGGCCCTCCGGCAGACGACAGGCTTCGTGGAGA
GTCTGTTGCGTCTGGTCGGCCTCGACTGGGCGGTGCCGGATTTCAGCACCCTGAGCCGGCGCCAGAAGACCTTGGCGGTGTCCATTCCCTACCGTGGCTC
ACACGGGCCGCTGAACCTGCTGATCGACAGCACCGGCATCAAGGCAGAGGGTGAAGGCGAGTGGCATGCCCGCAAGCATGGTGGCGCGAAACGCCGTCTC
TGGCGCAAGATCCACATCGGAGTCGACGAGCAGACGCTGGAGATCCGAGCCATCGAGGTCACCGGAAGCAACATCGGCGATGCGCCCATACTGCCCGAAC
TGCTCAACCAGATCCCCGCTGACGTGGAGATCGGCTCGGTCACCGCCGACGGTGCCTACGACACGCGCAAGTGTCACGACGCCATCGCCGACCGCGGCGC
CCATGCCGTCATCCCGCCGCGCAAGAACGCCAAGCCGTGGAAGCCCTCGACCGCGGGCGCCATCGCACGGAACGAGGCCCTGCGCGCATCGAAATACCTC
GGCCGTGCGATCTGGCGAAAATGGGCGGGCTATCACCGCCGAAGCCGCGCAGAGACGAAGATGCACTGCGTGAAGCTGCTGGGGCAGAGCCTCATGGCAC
GCGATTTCGATCGTCAGGTTGCCGAACTCCAGATCCGCGCCGCCGTGCTGAACGGCTACACCGCGCTCGGCATACCTGTCACCGAGCCCGTGGGATAAGT
GCGTCCGGGGAAAGGGGAAGTCCGGGGTTCACGCCTTTGCGCAACAAAGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
933 bp310 aa66998+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSRPIPPSYKTKNWPAYNEALKQRGSLTIWFDPDMAWVPPPTGKRGRQPQYSDAAIQTCLTMKVLFGMALRQTTGFVESLLRLVGLDWAVPDFSTLSRRQ
KTLAVSIPYRGSHGPLNLLIDSTGIKAEGEGEWHARKHGGAKRRLWRKIHIGVDEQTLEIRAIEVTGSNIGDAPILPELLNQIPADVEIGSVTADGAYDT
RKCHDAIADRGAHAVIPPRKNAKPWKPSTAGAIARNEALRASKYLGRAIWRKWAGYHRRSRAETKMHCVKLLGQSLMARDFDRQVAELQIRAAVLNGYTA
LGIPVTEPVG

 

Blast result :
Comments
ISRusp1 is 89% aa similar to ISSpo9.
References
1] Zhong,Z., Toukdarian,A. and Helinski,D.R.(2001) Direct submission GenBank.