ISRusp1
- Family IS5
- Group IS903
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_004574 | ND | Ruegeria sp. | Ruegeria sp. PR1b plasmid pSD25 |
DNA section
IS Length : 1051 bp
Ends
IR Length : 19
IRL : GGCTTTGTTGCGCAAAGGCCGGGTGAGGGATTCATCTCGTGAATCCAGCG
IRR : GGCTTTGTTGCGCAAAGGCGTGAACCCCGGACTTCCCCTTTCCCCGGACG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CGAGGCGTTTGCCCCGCATC | CCTGAGAATGATAAAGCGG | 0 |
DNA sequence
GGCTTTGTTGCGCAAAGGCCGGGTGAGGGATTCATCTCGTGAATCCAGCGTGGTAGCTGGCCTGCATGAGCAGACCCATCCCGCCGAGCTACAAGACCAA
GAACTGGCCGGCCTACAACGAAGCACTGAAGCAGCGCGGCTCCCTGACGATCTGGTTCGATCCGGACATGGCCTGGGTGCCGCCGCCGACCGGTAAGCGA
GGCCGGCAGCCGCAATATAGCGATGCCGCGATCCAGACCTGCCTGACGATGAAGGTCCTCTTTGGTATGGCCCTCCGGCAGACGACAGGCTTCGTGGAGA
GTCTGTTGCGTCTGGTCGGCCTCGACTGGGCGGTGCCGGATTTCAGCACCCTGAGCCGGCGCCAGAAGACCTTGGCGGTGTCCATTCCCTACCGTGGCTC
ACACGGGCCGCTGAACCTGCTGATCGACAGCACCGGCATCAAGGCAGAGGGTGAAGGCGAGTGGCATGCCCGCAAGCATGGTGGCGCGAAACGCCGTCTC
TGGCGCAAGATCCACATCGGAGTCGACGAGCAGACGCTGGAGATCCGAGCCATCGAGGTCACCGGAAGCAACATCGGCGATGCGCCCATACTGCCCGAAC
TGCTCAACCAGATCCCCGCTGACGTGGAGATCGGCTCGGTCACCGCCGACGGTGCCTACGACACGCGCAAGTGTCACGACGCCATCGCCGACCGCGGCGC
CCATGCCGTCATCCCGCCGCGCAAGAACGCCAAGCCGTGGAAGCCCTCGACCGCGGGCGCCATCGCACGGAACGAGGCCCTGCGCGCATCGAAATACCTC
GGCCGTGCGATCTGGCGAAAATGGGCGGGCTATCACCGCCGAAGCCGCGCAGAGACGAAGATGCACTGCGTGAAGCTGCTGGGGCAGAGCCTCATGGCAC
GCGATTTCGATCGTCAGGTTGCCGAACTCCAGATCCGCGCCGCCGTGCTGAACGGCTACACCGCGCTCGGCATACCTGTCACCGAGCCCGTGGGATAAGT
GCGTCCGGGGAAAGGGGAAGTCCGGGGTTCACGCCTTTGCGCAACAAAGCC
GAACTGGCCGGCCTACAACGAAGCACTGAAGCAGCGCGGCTCCCTGACGATCTGGTTCGATCCGGACATGGCCTGGGTGCCGCCGCCGACCGGTAAGCGA
GGCCGGCAGCCGCAATATAGCGATGCCGCGATCCAGACCTGCCTGACGATGAAGGTCCTCTTTGGTATGGCCCTCCGGCAGACGACAGGCTTCGTGGAGA
GTCTGTTGCGTCTGGTCGGCCTCGACTGGGCGGTGCCGGATTTCAGCACCCTGAGCCGGCGCCAGAAGACCTTGGCGGTGTCCATTCCCTACCGTGGCTC
ACACGGGCCGCTGAACCTGCTGATCGACAGCACCGGCATCAAGGCAGAGGGTGAAGGCGAGTGGCATGCCCGCAAGCATGGTGGCGCGAAACGCCGTCTC
TGGCGCAAGATCCACATCGGAGTCGACGAGCAGACGCTGGAGATCCGAGCCATCGAGGTCACCGGAAGCAACATCGGCGATGCGCCCATACTGCCCGAAC
TGCTCAACCAGATCCCCGCTGACGTGGAGATCGGCTCGGTCACCGCCGACGGTGCCTACGACACGCGCAAGTGTCACGACGCCATCGCCGACCGCGGCGC
CCATGCCGTCATCCCGCCGCGCAAGAACGCCAAGCCGTGGAAGCCCTCGACCGCGGGCGCCATCGCACGGAACGAGGCCCTGCGCGCATCGAAATACCTC
GGCCGTGCGATCTGGCGAAAATGGGCGGGCTATCACCGCCGAAGCCGCGCAGAGACGAAGATGCACTGCGTGAAGCTGCTGGGGCAGAGCCTCATGGCAC
GCGATTTCGATCGTCAGGTTGCCGAACTCCAGATCCGCGCCGCCGTGCTGAACGGCTACACCGCGCTCGGCATACCTGTCACCGAGCCCGTGGGATAAGT
GCGTCCGGGGAAAGGGGAAGTCCGGGGTTCACGCCTTTGCGCAACAAAGCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
933 bp | 310 aa | 66 | 998 | + | No |
Chemistry : DDE
ORF sequence :
MSRPIPPSYKTKNWPAYNEALKQRGSLTIWFDPDMAWVPPPTGKRGRQPQYSDAAIQTCLTMKVLFGMALRQTTGFVESLLRLVGLDWAVPDFSTLSRRQ
KTLAVSIPYRGSHGPLNLLIDSTGIKAEGEGEWHARKHGGAKRRLWRKIHIGVDEQTLEIRAIEVTGSNIGDAPILPELLNQIPADVEIGSVTADGAYDT
RKCHDAIADRGAHAVIPPRKNAKPWKPSTAGAIARNEALRASKYLGRAIWRKWAGYHRRSRAETKMHCVKLLGQSLMARDFDRQVAELQIRAAVLNGYTA
LGIPVTEPVG
KTLAVSIPYRGSHGPLNLLIDSTGIKAEGEGEWHARKHGGAKRRLWRKIHIGVDEQTLEIRAIEVTGSNIGDAPILPELLNQIPADVEIGSVTADGAYDT
RKCHDAIADRGAHAVIPPRKNAKPWKPSTAGAIARNEALRASKYLGRAIWRKWAGYHRRSRAETKMHCVKLLGQSLMARDFDRQVAELQIRAAVLNGYTA
LGIPVTEPVG
Blast result :
Comments
ISRusp1 is 89% aa similar to ISSpo9.
References
1] Zhong,Z., Toukdarian,A. and Helinski,D.R.(2001) Direct submission GenBank.