ISSpo9

  • Family IS5
  • Group IS903
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_006569 ND Silicibacter pomeroyi
Silicibacter pomeroyi DSS-3 megaplasmid
DNA section
IS Length : 1049 bp

Ends


IR Length : 25/27

IRL : GGCTCTGTTGCACAAATCCGTGAGGGATTCATCTCGTGAATCCAGCATGG
IRR : GGCTCTGTTGCACAAATCAGCTGAGGGCCGGGCTTCCCCTTTCCCCGGAC

Insertion site


Left flankDirect repeatRight flankDR Length
CCCGAGAGTTTATCCTTGGGCGGCGGAAATGTG9

DNA sequence

GGCTCTGTTGCACAAATCCGTGAGGGATTCATCTCGTGAATCCAGCATGGTAGCTGTGAGGCATGAGCAGACCGACACCTCCTACCTACAAGACCAGGAA
CTGGCCGGCCTACAACAAGGCGCTCAAGCGCCGGGGCTCGCTAACGATCTGGTTCGACCCCGCCATGACCTGGGACGCCGCGCCAACCGGCAAGCGCGGG
CGGCAGCCCGACTACAGTGATGCTGCGGTCCAGACCTGCCTGACGATGAAGGTTCTGTTCGGGATGGCGCTCAGGCAGACAACCGAGTTCGTCGAGAGCC
TTTTGGGCCTGATCGACCTGGACTGGGCGGTGCCCGACTTCAGCACGCTGTCGCGCCGTCAAAAGACCCTGAAGGTCAATATCCCCTATCGCGGATCAGA
CGGCCCGTTACACCTTTTGATCGACAGCACGGGGATCAAGGTCGAGGGCGAAGGCGAGTGGAACGCCCGCAAGCATGGCGGCACGAAACGGCGCGTCTGG
CGCAAGATCCACATCGGAATTGACGAGAAGTCCTTGGAAATCCGGGCCGCCGAGTTCACCACCAGTGAGATCGGCGATGCGCCCATGCTGCCCGAACTGC
TGGACCAGATCCCGCCCGAGCAAGAGATCGGCAGCGTCACCGCCGACGGCGCCTTCGACACCCGCAAGTGCCATGAAGCCATCGCCGCCCGAGGGGCCGC
CGCAATCATCCCGCCCCGCAAGAACGCCAAGCCGTGGAAACCCGACACCGCCGGGGCCATCGCACGAAACGAGATCCTTCGGACATCGAAGCGCGTCGGG
CGGACCATCTGGCGACTATGGAGCGGCTATCACCGACGAAGCCGGGCCGAGACCAAGATGCACTGCGTCAAGCTCCTGGGTCAGCGTCTGACCGCGCGGG
ACTTCGACCGTCAGGTCGCAGAGTTCCAGCTCCGTGTTGCCGTCCTGAACGGCTTCACCGCGCTCGGCACGCCCATCACAGATGCTATGGGATGACTCTG
TCCGGGGAAAGGGGAAGCCCGGCCCTCAGCTGATTTGTGCAACAGAGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
933 bp310 aa63995+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSRPTPPTYKTRNWPAYNKALKRRGSLTIWFDPAMTWDAAPTGKRGRQPDYSDAAVQTCLTMKVLFGMALRQTTEFVESLLGLIDLDWAVPDFSTLSRRQ
KTLKVNIPYRGSDGPLHLLIDSTGIKVEGEGEWNARKHGGTKRRVWRKIHIGIDEKSLEIRAAEFTTSEIGDAPMLPELLDQIPPEQEIGSVTADGAFDT
RKCHEAIAARGAAAIIPPRKNAKPWKPDTAGAIARNEILRTSKRVGRTIWRLWSGYHRRSRAETKMHCVKLLGQRLTARDFDRQVAEFQLRVAVLNGFTA
LGTPITDAMG

 

Blast result :
Comments
There is one copy of ISSpo9 in Silicibacter pomeroyi DSS-3.
ISSpo9 is 74% aa similar to ISPpa3.
References
1] Robert DeBoy (2005) Direct submission.
2] Moran,M.A., Buchan,A., Gonzalez,J.M., Heidelberg,J.F., Whitman,W.B., Kiene,R.P., Henriksen,J.R., King,G.M., Belas,R., Fuqua,C., Brinkac,L., Lewis,M., Johri,S., Weaver,B., Pai,G., Eisen,J.A., Rahe,E., Sheldon,W.M., Ye,W., Miller,T.R., Carlton,J., Rasko,D.A., Paulsen,I.T., Ren,Q., Daugherty,S.C., Deboy,R.T., Dodson,R.J., Durkin,A.S., Madupu,R., Nelson,W.C., Sullivan,S.A., Rosovitz,M.J., Haft,D.H., Selengut,J. and Ward,N. (2004) Nature 432 (7019), 910-913