ISSpo9
- Family IS5
- Group IS903
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_006569 | ND | Silicibacter pomeroyi | Silicibacter pomeroyi DSS-3 megaplasmid |
DNA section
IS Length : 1049 bp
Ends
IR Length : 25/27
IRL : GGCTCTGTTGCACAAATCCGTGAGGGATTCATCTCGTGAATCCAGCATGG
IRR : GGCTCTGTTGCACAAATCAGCTGAGGGCCGGGCTTCCCCTTTCCCCGGAC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CCCGAGAGTTTATC | CTTGGGCGG | CGGAAATGTG | 9 |
DNA sequence
GGCTCTGTTGCACAAATCCGTGAGGGATTCATCTCGTGAATCCAGCATGGTAGCTGTGAGGCATGAGCAGACCGACACCTCCTACCTACAAGACCAGGAA
CTGGCCGGCCTACAACAAGGCGCTCAAGCGCCGGGGCTCGCTAACGATCTGGTTCGACCCCGCCATGACCTGGGACGCCGCGCCAACCGGCAAGCGCGGG
CGGCAGCCCGACTACAGTGATGCTGCGGTCCAGACCTGCCTGACGATGAAGGTTCTGTTCGGGATGGCGCTCAGGCAGACAACCGAGTTCGTCGAGAGCC
TTTTGGGCCTGATCGACCTGGACTGGGCGGTGCCCGACTTCAGCACGCTGTCGCGCCGTCAAAAGACCCTGAAGGTCAATATCCCCTATCGCGGATCAGA
CGGCCCGTTACACCTTTTGATCGACAGCACGGGGATCAAGGTCGAGGGCGAAGGCGAGTGGAACGCCCGCAAGCATGGCGGCACGAAACGGCGCGTCTGG
CGCAAGATCCACATCGGAATTGACGAGAAGTCCTTGGAAATCCGGGCCGCCGAGTTCACCACCAGTGAGATCGGCGATGCGCCCATGCTGCCCGAACTGC
TGGACCAGATCCCGCCCGAGCAAGAGATCGGCAGCGTCACCGCCGACGGCGCCTTCGACACCCGCAAGTGCCATGAAGCCATCGCCGCCCGAGGGGCCGC
CGCAATCATCCCGCCCCGCAAGAACGCCAAGCCGTGGAAACCCGACACCGCCGGGGCCATCGCACGAAACGAGATCCTTCGGACATCGAAGCGCGTCGGG
CGGACCATCTGGCGACTATGGAGCGGCTATCACCGACGAAGCCGGGCCGAGACCAAGATGCACTGCGTCAAGCTCCTGGGTCAGCGTCTGACCGCGCGGG
ACTTCGACCGTCAGGTCGCAGAGTTCCAGCTCCGTGTTGCCGTCCTGAACGGCTTCACCGCGCTCGGCACGCCCATCACAGATGCTATGGGATGACTCTG
TCCGGGGAAAGGGGAAGCCCGGCCCTCAGCTGATTTGTGCAACAGAGCC
CTGGCCGGCCTACAACAAGGCGCTCAAGCGCCGGGGCTCGCTAACGATCTGGTTCGACCCCGCCATGACCTGGGACGCCGCGCCAACCGGCAAGCGCGGG
CGGCAGCCCGACTACAGTGATGCTGCGGTCCAGACCTGCCTGACGATGAAGGTTCTGTTCGGGATGGCGCTCAGGCAGACAACCGAGTTCGTCGAGAGCC
TTTTGGGCCTGATCGACCTGGACTGGGCGGTGCCCGACTTCAGCACGCTGTCGCGCCGTCAAAAGACCCTGAAGGTCAATATCCCCTATCGCGGATCAGA
CGGCCCGTTACACCTTTTGATCGACAGCACGGGGATCAAGGTCGAGGGCGAAGGCGAGTGGAACGCCCGCAAGCATGGCGGCACGAAACGGCGCGTCTGG
CGCAAGATCCACATCGGAATTGACGAGAAGTCCTTGGAAATCCGGGCCGCCGAGTTCACCACCAGTGAGATCGGCGATGCGCCCATGCTGCCCGAACTGC
TGGACCAGATCCCGCCCGAGCAAGAGATCGGCAGCGTCACCGCCGACGGCGCCTTCGACACCCGCAAGTGCCATGAAGCCATCGCCGCCCGAGGGGCCGC
CGCAATCATCCCGCCCCGCAAGAACGCCAAGCCGTGGAAACCCGACACCGCCGGGGCCATCGCACGAAACGAGATCCTTCGGACATCGAAGCGCGTCGGG
CGGACCATCTGGCGACTATGGAGCGGCTATCACCGACGAAGCCGGGCCGAGACCAAGATGCACTGCGTCAAGCTCCTGGGTCAGCGTCTGACCGCGCGGG
ACTTCGACCGTCAGGTCGCAGAGTTCCAGCTCCGTGTTGCCGTCCTGAACGGCTTCACCGCGCTCGGCACGCCCATCACAGATGCTATGGGATGACTCTG
TCCGGGGAAAGGGGAAGCCCGGCCCTCAGCTGATTTGTGCAACAGAGCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
933 bp | 310 aa | 63 | 995 | + | No |
Chemistry : DDE
ORF sequence :
MSRPTPPTYKTRNWPAYNKALKRRGSLTIWFDPAMTWDAAPTGKRGRQPDYSDAAVQTCLTMKVLFGMALRQTTEFVESLLGLIDLDWAVPDFSTLSRRQ
KTLKVNIPYRGSDGPLHLLIDSTGIKVEGEGEWNARKHGGTKRRVWRKIHIGIDEKSLEIRAAEFTTSEIGDAPMLPELLDQIPPEQEIGSVTADGAFDT
RKCHEAIAARGAAAIIPPRKNAKPWKPDTAGAIARNEILRTSKRVGRTIWRLWSGYHRRSRAETKMHCVKLLGQRLTARDFDRQVAEFQLRVAVLNGFTA
LGTPITDAMG
KTLKVNIPYRGSDGPLHLLIDSTGIKVEGEGEWNARKHGGTKRRVWRKIHIGIDEKSLEIRAAEFTTSEIGDAPMLPELLDQIPPEQEIGSVTADGAFDT
RKCHEAIAARGAAAIIPPRKNAKPWKPDTAGAIARNEILRTSKRVGRTIWRLWSGYHRRSRAETKMHCVKLLGQRLTARDFDRQVAEFQLRVAVLNGFTA
LGTPITDAMG
Blast result :
Comments
There is one copy of ISSpo9 in Silicibacter pomeroyi DSS-3.
ISSpo9 is 74% aa similar to ISPpa3.
ISSpo9 is 74% aa similar to ISPpa3.
References
1] Robert DeBoy (2005) Direct submission.
2] Moran,M.A., Buchan,A., Gonzalez,J.M., Heidelberg,J.F., Whitman,W.B., Kiene,R.P., Henriksen,J.R., King,G.M., Belas,R., Fuqua,C., Brinkac,L., Lewis,M., Johri,S., Weaver,B., Pai,G., Eisen,J.A., Rahe,E., Sheldon,W.M., Ye,W., Miller,T.R., Carlton,J., Rasko,D.A., Paulsen,I.T., Ren,Q., Daugherty,S.C., Deboy,R.T., Dodson,R.J., Durkin,A.S., Madupu,R., Nelson,W.C., Sullivan,S.A., Rosovitz,M.J., Haft,D.H., Selengut,J. and Ward,N. (2004) Nature 432 (7019), 910-913
2] Moran,M.A., Buchan,A., Gonzalez,J.M., Heidelberg,J.F., Whitman,W.B., Kiene,R.P., Henriksen,J.R., King,G.M., Belas,R., Fuqua,C., Brinkac,L., Lewis,M., Johri,S., Weaver,B., Pai,G., Eisen,J.A., Rahe,E., Sheldon,W.M., Ye,W., Miller,T.R., Carlton,J., Rasko,D.A., Paulsen,I.T., Ren,Q., Daugherty,S.C., Deboy,R.T., Dodson,R.J., Durkin,A.S., Madupu,R., Nelson,W.C., Sullivan,S.A., Rosovitz,M.J., Haft,D.H., Selengut,J. and Ward,N. (2004) Nature 432 (7019), 910-913