ISChy2
- Family IS110
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_007503 | ND | Carboxydothermus hydrogenoformans | Carboxydothermus hydrogenoformans Z-2901 |
DNA section
IS Length : 1708 bp
Ends
Left end : AGCATTCCTGTAATAAATTAAAATAGCCTTTGCAAAAACAAAACCCTCCTGGTAAAAGAATAATTGGAACACAAAACCACTTAACCAGGAGGGCGATAGG
Right end : AAAATCCTTTACAAAAAACAACATTGAAATAGCTGAAATTCAGCGAAAAAATAAGATTTTAAGAGCTTAATTTAGTTAATCAAAAAATATTGAGATAGGG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TCGGAGGGAAATAAATGCT | AGTGGATCAATTA | 0 |
DNA sequence
AGCATTCCTGTAATAAATTAAAATAGCCTTTGCAAAAACAAAACCCTCCTGGTAAAAGAATAATTGGAACACAAAACCACTTAACCAGGAGGGCGATAGG
CATGAACAAAATCGAGAAACTCCTTTTAGTTCATGGTTCCGACATAATTTTCGTCGGGATCGATGTTGCCAAAAAGAACCACTATGCAAGGATCATAAAC
CACATCGGACTCGAACCAGTAAAACCTTTCAAGTTTAATAATAGCAAAGATGGCTACTTTCGTATAGTCTCTAAAATACTCGAAGCCAAAGAAAAAACAA
AAGCAGAAAGGGTAATAATAGGCCTTGAACCCAGCGGCCATTACTGGAAGCCCCTCACATGGTTTTTGAAGCAACAGGGATACCGGGTAGTCCTGGTGAA
CCCGTTCCACGTGAAGAAAAGGAAAGAAGAGGAAGACAACAGCCCTACCAAAAACGACCGAAAGGACGCATTAATAATTGCCAAACTCGTAAAAGAGGGT
AAGTTTCTAAACTGCCTCTTACCCGAAGGGATTTACGCAGACTTAAGAAACCTTTCGGTCGCAAGAAAGCAGTTAATAAGTAAGCTTAACAGCGCTAAAA
ACAAACTAGTTTCTATCATAGATGAATACTTTCCTGAATTTGAAGAAGTATTCAAGAACCTCTTAGGCAAGGCGGCTTTATGGGTATTGCGGCACTGTCC
GTTTCCGAGCATGATCTTAAACTACACCAAAGAAGAGCTGGCAGAAAACCTGAAGAGAGCCGCCAATAAAAGAGTGGGCATAAAAAGAGCCGAGAAACTC
ATCGAAGCAGCACAAAAGTCAGTAGGGGTAAAAGAAGGGTTAAAAGGGGCATATATTCGCCTTCACTCATACCTTGACGAAATAGAATTTTTAAAAGGTC
AGCTCGAAACGATTGAAAAAACAATGGAAGAATTGCTCAAAAAAATAGACATAGCAGAATACCTCCTCAGCATTCCTGGCATAGGAGTAATAACCGTAGC
TGGATTTCTAGCGGATGTAGGTGACTTAGCCAACTACACCCACTTTAAGCAGATACAAAAACTAGCAGGGCTTAATATAGCCGAAAACCAATCGGGAAAA
CACAAAGGGAAGGCCAAGATCTCCAAGAGGGGCCGTCCTGAGCTGAGGAATCTTCTCTACAAAGCAAGCCTAACGCTAGTAGCCAAAAACAAGGAATTCA
AGGCACTATACAACTATTTCCTAAAAAGGCCCAAAAATCCATTGAAAGCTAAGCAGGCATTGATTGCGATTTCAGTCAAACTGGTAAGGGTGATGTTTGC
CCTTGCCAAGAAGAGAGAAAATTACGATCCCCAGAAAGTCCTTGGGGAATACCGCATTATGCAAATAAACCAGTTAGCAGCCTAAAAATGAGTTGGCCGG
TAAGGTGGGGAAGCTCTAACACTCCCATAGGGGCAAGACCCTGCATGCTAGTAAAAAAGCTCCCCGCCTTACCCTCTAAGGCAGAACGAAGGAATGTAAT
GAGGGCGTAGGACCTCGAGAGACATGATAGGGTAGTCGAGGGCATAAGTGAAGCGTTTGTGAGGCAACTTGATTCGCAAGTTGTCGTAGGTGGTCTTGTT
TTGTCTCAAAAATCCTTTACAAAAAACAACATTGAAATAGCTGAAATTCAGCGAAAAAATAAGATTTTAAGAGCTTAATTTAGTTAATCAAAAAATATTG
AGATAGGG
CATGAACAAAATCGAGAAACTCCTTTTAGTTCATGGTTCCGACATAATTTTCGTCGGGATCGATGTTGCCAAAAAGAACCACTATGCAAGGATCATAAAC
CACATCGGACTCGAACCAGTAAAACCTTTCAAGTTTAATAATAGCAAAGATGGCTACTTTCGTATAGTCTCTAAAATACTCGAAGCCAAAGAAAAAACAA
AAGCAGAAAGGGTAATAATAGGCCTTGAACCCAGCGGCCATTACTGGAAGCCCCTCACATGGTTTTTGAAGCAACAGGGATACCGGGTAGTCCTGGTGAA
CCCGTTCCACGTGAAGAAAAGGAAAGAAGAGGAAGACAACAGCCCTACCAAAAACGACCGAAAGGACGCATTAATAATTGCCAAACTCGTAAAAGAGGGT
AAGTTTCTAAACTGCCTCTTACCCGAAGGGATTTACGCAGACTTAAGAAACCTTTCGGTCGCAAGAAAGCAGTTAATAAGTAAGCTTAACAGCGCTAAAA
ACAAACTAGTTTCTATCATAGATGAATACTTTCCTGAATTTGAAGAAGTATTCAAGAACCTCTTAGGCAAGGCGGCTTTATGGGTATTGCGGCACTGTCC
GTTTCCGAGCATGATCTTAAACTACACCAAAGAAGAGCTGGCAGAAAACCTGAAGAGAGCCGCCAATAAAAGAGTGGGCATAAAAAGAGCCGAGAAACTC
ATCGAAGCAGCACAAAAGTCAGTAGGGGTAAAAGAAGGGTTAAAAGGGGCATATATTCGCCTTCACTCATACCTTGACGAAATAGAATTTTTAAAAGGTC
AGCTCGAAACGATTGAAAAAACAATGGAAGAATTGCTCAAAAAAATAGACATAGCAGAATACCTCCTCAGCATTCCTGGCATAGGAGTAATAACCGTAGC
TGGATTTCTAGCGGATGTAGGTGACTTAGCCAACTACACCCACTTTAAGCAGATACAAAAACTAGCAGGGCTTAATATAGCCGAAAACCAATCGGGAAAA
CACAAAGGGAAGGCCAAGATCTCCAAGAGGGGCCGTCCTGAGCTGAGGAATCTTCTCTACAAAGCAAGCCTAACGCTAGTAGCCAAAAACAAGGAATTCA
AGGCACTATACAACTATTTCCTAAAAAGGCCCAAAAATCCATTGAAAGCTAAGCAGGCATTGATTGCGATTTCAGTCAAACTGGTAAGGGTGATGTTTGC
CCTTGCCAAGAAGAGAGAAAATTACGATCCCCAGAAAGTCCTTGGGGAATACCGCATTATGCAAATAAACCAGTTAGCAGCCTAAAAATGAGTTGGCCGG
TAAGGTGGGGAAGCTCTAACACTCCCATAGGGGCAAGACCCTGCATGCTAGTAAAAAAGCTCCCCGCCTTACCCTCTAAGGCAGAACGAAGGAATGTAAT
GAGGGCGTAGGACCTCGAGAGACATGATAGGGTAGTCGAGGGCATAAGTGAAGCGTTTGTGAGGCAACTTGATTCGCAAGTTGTCGTAGGTGGTCTTGTT
TTGTCTCAAAAATCCTTTACAAAAAACAACATTGAAATAGCTGAAATTCAGCGAAAAAATAAGATTTTAAGAGCTTAATTTAGTTAATCAAAAAATATTG
AGATAGGG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1284 bp | 427 aa | 102 | 1385 | + | No |
Chemistry : DEDD
ORF sequence :
MNKIEKLLLVHGSDIIFVGIDVAKKNHYARIINHIGLEPVKPFKFNNSKDGYFRIVSKILEAKEKTKAERVIIGLEPSGHYWKPLTWFLKQQGYRVVLVN
PFHVKKRKEEEDNSPTKNDRKDALIIAKLVKEGKFLNCLLPEGIYADLRNLSVARKQLISKLNSAKNKLVSIIDEYFPEFEEVFKNLLGKAALWVLRHCP
FPSMILNYTKEELAENLKRAANKRVGIKRAEKLIEAAQKSVGVKEGLKGAYIRLHSYLDEIEFLKGQLETIEKTMEELLKKIDIAEYLLSIPGIGVITVA
GFLADVGDLANYTHFKQIQKLAGLNIAENQSGKHKGKAKISKRGRPELRNLLYKASLTLVAKNKEFKALYNYFLKRPKNPLKAKQALIAISVKLVRVMFA
LAKKRENYDPQKVLGEYRIMQINQLAA
PFHVKKRKEEEDNSPTKNDRKDALIIAKLVKEGKFLNCLLPEGIYADLRNLSVARKQLISKLNSAKNKLVSIIDEYFPEFEEVFKNLLGKAALWVLRHCP
FPSMILNYTKEELAENLKRAANKRVGIKRAEKLIEAAQKSVGVKEGLKGAYIRLHSYLDEIEFLKGQLETIEKTMEELLKKIDIAEYLLSIPGIGVITVA
GFLADVGDLANYTHFKQIQKLAGLNIAENQSGKHKGKAKISKRGRPELRNLLYKASLTLVAKNKEFKALYNYFLKRPKNPLKAKQALIAISVKLVRVMFA
LAKKRENYDPQKVLGEYRIMQINQLAA
Blast result :
Comments
ISChy2 is 64% aa similar to IS650.
References
1] Wu,M., Ren,Q., Durkin,A.S., Daugherty,S.C., Brinkac,L.M., Dodson,R.J., Madupu,R., Sullivan,S.A., Kolonay,J.F., Nelson,W.C., Tallon,L.J., Jones,K.M., Ulrich,L.E., Gonzalez,J.M., Zhulin,I.B., Robb,F.T. and Eisen,J.A. (2005) PLoS Genet. 1 (5), E65.