ISChy2

  • Family IS110
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_007503 ND Carboxydothermus hydrogenoformans
Carboxydothermus hydrogenoformans Z-2901
DNA section
IS Length : 1708 bp

Ends


Left end : AGCATTCCTGTAATAAATTAAAATAGCCTTTGCAAAAACAAAACCCTCCTGGTAAAAGAATAATTGGAACACAAAACCACTTAACCAGGAGGGCGATAGG
Right end : AAAATCCTTTACAAAAAACAACATTGAAATAGCTGAAATTCAGCGAAAAAATAAGATTTTAAGAGCTTAATTTAGTTAATCAAAAAATATTGAGATAGGG

Insertion site


Left flankDirect repeatRight flankDR Length
TCGGAGGGAAATAAATGCTAGTGGATCAATTA0

DNA sequence

AGCATTCCTGTAATAAATTAAAATAGCCTTTGCAAAAACAAAACCCTCCTGGTAAAAGAATAATTGGAACACAAAACCACTTAACCAGGAGGGCGATAGG
CATGAACAAAATCGAGAAACTCCTTTTAGTTCATGGTTCCGACATAATTTTCGTCGGGATCGATGTTGCCAAAAAGAACCACTATGCAAGGATCATAAAC
CACATCGGACTCGAACCAGTAAAACCTTTCAAGTTTAATAATAGCAAAGATGGCTACTTTCGTATAGTCTCTAAAATACTCGAAGCCAAAGAAAAAACAA
AAGCAGAAAGGGTAATAATAGGCCTTGAACCCAGCGGCCATTACTGGAAGCCCCTCACATGGTTTTTGAAGCAACAGGGATACCGGGTAGTCCTGGTGAA
CCCGTTCCACGTGAAGAAAAGGAAAGAAGAGGAAGACAACAGCCCTACCAAAAACGACCGAAAGGACGCATTAATAATTGCCAAACTCGTAAAAGAGGGT
AAGTTTCTAAACTGCCTCTTACCCGAAGGGATTTACGCAGACTTAAGAAACCTTTCGGTCGCAAGAAAGCAGTTAATAAGTAAGCTTAACAGCGCTAAAA
ACAAACTAGTTTCTATCATAGATGAATACTTTCCTGAATTTGAAGAAGTATTCAAGAACCTCTTAGGCAAGGCGGCTTTATGGGTATTGCGGCACTGTCC
GTTTCCGAGCATGATCTTAAACTACACCAAAGAAGAGCTGGCAGAAAACCTGAAGAGAGCCGCCAATAAAAGAGTGGGCATAAAAAGAGCCGAGAAACTC
ATCGAAGCAGCACAAAAGTCAGTAGGGGTAAAAGAAGGGTTAAAAGGGGCATATATTCGCCTTCACTCATACCTTGACGAAATAGAATTTTTAAAAGGTC
AGCTCGAAACGATTGAAAAAACAATGGAAGAATTGCTCAAAAAAATAGACATAGCAGAATACCTCCTCAGCATTCCTGGCATAGGAGTAATAACCGTAGC
TGGATTTCTAGCGGATGTAGGTGACTTAGCCAACTACACCCACTTTAAGCAGATACAAAAACTAGCAGGGCTTAATATAGCCGAAAACCAATCGGGAAAA
CACAAAGGGAAGGCCAAGATCTCCAAGAGGGGCCGTCCTGAGCTGAGGAATCTTCTCTACAAAGCAAGCCTAACGCTAGTAGCCAAAAACAAGGAATTCA
AGGCACTATACAACTATTTCCTAAAAAGGCCCAAAAATCCATTGAAAGCTAAGCAGGCATTGATTGCGATTTCAGTCAAACTGGTAAGGGTGATGTTTGC
CCTTGCCAAGAAGAGAGAAAATTACGATCCCCAGAAAGTCCTTGGGGAATACCGCATTATGCAAATAAACCAGTTAGCAGCCTAAAAATGAGTTGGCCGG
TAAGGTGGGGAAGCTCTAACACTCCCATAGGGGCAAGACCCTGCATGCTAGTAAAAAAGCTCCCCGCCTTACCCTCTAAGGCAGAACGAAGGAATGTAAT
GAGGGCGTAGGACCTCGAGAGACATGATAGGGTAGTCGAGGGCATAAGTGAAGCGTTTGTGAGGCAACTTGATTCGCAAGTTGTCGTAGGTGGTCTTGTT
TTGTCTCAAAAATCCTTTACAAAAAACAACATTGAAATAGCTGAAATTCAGCGAAAAAATAAGATTTTAAGAGCTTAATTTAGTTAATCAAAAAATATTG
AGATAGGG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1284 bp427 aa1021385+No
ORF function : Transposase
Chemistry : DEDD

ORF sequence :

MNKIEKLLLVHGSDIIFVGIDVAKKNHYARIINHIGLEPVKPFKFNNSKDGYFRIVSKILEAKEKTKAERVIIGLEPSGHYWKPLTWFLKQQGYRVVLVN
PFHVKKRKEEEDNSPTKNDRKDALIIAKLVKEGKFLNCLLPEGIYADLRNLSVARKQLISKLNSAKNKLVSIIDEYFPEFEEVFKNLLGKAALWVLRHCP
FPSMILNYTKEELAENLKRAANKRVGIKRAEKLIEAAQKSVGVKEGLKGAYIRLHSYLDEIEFLKGQLETIEKTMEELLKKIDIAEYLLSIPGIGVITVA
GFLADVGDLANYTHFKQIQKLAGLNIAENQSGKHKGKAKISKRGRPELRNLLYKASLTLVAKNKEFKALYNYFLKRPKNPLKAKQALIAISVKLVRVMFA
LAKKRENYDPQKVLGEYRIMQINQLAA

 

Blast result :
Comments
ISChy2 is 64% aa similar to IS650.
References
1] Wu,M., Ren,Q., Durkin,A.S., Daugherty,S.C., Brinkac,L.M., Dodson,R.J., Madupu,R., Sullivan,S.A., Kolonay,J.F., Nelson,W.C., Tallon,L.J., Jones,K.M., Ulrich,L.E., Gonzalez,J.M., Zhulin,I.B., Robb,F.T. and Eisen,J.A. (2005) PLoS Genet. 1 (5), E65.