ISBma3
- Family IS110
- Group
Isoform Synonym(s) ISBmu10
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_008061 | ND | Burkholderia mallei | Burkholderia multivorans ATCC 17616 Burkholderia cenocepacia AU 1054 chromosome 2 Burkholderia mallei ATCC:23344 |
DNA section
IS Length : 1458 bp
Ends
Left end : GCCCCGTTACTATCTTCCTGTCCCAATAATGGGGCTTTGGCCAGCCAGGCCCGGTATGATTCCCGCCCCCAGTCGCAGTCATGATCCGGGGGGTGTTGTC
Right end : ACGGCGACGCTGCGACGTCCTGTTCGCCATGCTGCGCGACGGCACCATTTACCAACCCAAGTCAGCCCCTAACGCTTGACGAAAGACATAGGGGCACCCC
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| CGACGCGACGCGCCG | GCTCGCGGCACCCGGC | 0 |
DNA sequence
GCCCCGTTACTATCTTCCTGTCCCAATAATGGGGCTTTGGCCAGCCAGGCCCGGTATGATTCCCGCCCCCAGTCGCAGTCATGATCCGGGGGGTGTTGTC
GCCGGGTCTGGTGGGTGGCTGGTGATCGCTGATAGGGGTTTGGCCGGAATATTCCGACGCCGTCCGTAACGTGGATGCCGAGACTTGCCACCGTTGTTGC
AGGCCAATCCGTTCACTTTGCACAAACTGCGATGCAAGACACTCAACAGCATGACGCCGTGGATGTTTTCGTCGGCGTCGACGTCGGTAAAGGCCAGCAT
CACGCCGTTGCACTCGATCGAAATGGCAAGCGTCTGTACAACAAGGCGCTACCCAACGACGAGGTCAAGCTGCGAGCCCTCATCGCCGAACTCAAGACTC
ACGGTCGACTGCTGTTCGTCGTCGATCAGCCTTCCACCATCGGTGCGCTTCCTGTAGCCGTCGCCCGCGCTGAAGGCGTACTCGTCGCCTATCTGCCCGG
ACTGGCCATGCGCCGCATCGCTGATTTGCACGCCGGCGAAGCCAAGACCGATGCCCGCGACGCCGCCATCATCGCCGAAGCCGCTCGCTCGATGCCGCAT
ACGCTGCGCTCGCTTCGACTGGCCGACGAGCAGCTCGCCGAACTCACCATGCTGTGCGGCTTCGATGACGACCTCGCCGCTCAGGTCACACAGACCAGCA
ACCGCATTCGCGGCCTGCTTACTCAAATCCATCCGGCGCTCGAGCGCGTTCTCGGACCGCGCCTCGACCATCCGGCGGTGCTCGATCTGCTTGAGCGCTA
TCCGTCGCCCGCCGCACTTGCCAGCACCACCGAGAAGACGCTCGCCAATCGCCTGACCAAGCTCGCTCCTCGCATGGGCAAAGGCTTGGCGGCCGAGATC
GTTCAGGCACTGAGTGAACAAGCCGTGACCGTGCCCGGCACGCAAGCCGCCACCATCGTCATGCCCCGTTTAGCCCAGCAGCTTGCGGCCTTGCGTAAGC
AACGCGACGAGGTCGCCGCCGAAGTTGAGCGACTGGTGCTTGCTCACCCTCTTTGGCCGGTCCTGACCAGCATGCCGGGAGTCGGCGTCAGGACCGCCGC
CAGACTCCTGACCGAAGTCGCCCATAAGGCCTTCGCTTCGGCTGCACACTTGGCGGCCTACGCTGGCCTTGCCCCGGTCACCCGGCGCTCAGGCTCGTCG
ATCCGTGGCGAGCATCCATCCAGACGGGGAAACAAGGTGCTCAAGCGCGCCTTGTTCCTATCCGCCTTCGCGGCCTTACGAGACCCAGTCTCACGGGCCT
ATTACTCCCGCAAGATCCAGCAAGGCAAGCGCCACAACCAAGCGCTGATCGCACTGGCACGGCGACGCTGCGACGTCCTGTTCGCCATGCTGCGCGACGG
CACCATTTACCAACCCAAGTCAGCCCCTAACGCTTGACGAAAGACATAGGGGCACCCC
GCCGGGTCTGGTGGGTGGCTGGTGATCGCTGATAGGGGTTTGGCCGGAATATTCCGACGCCGTCCGTAACGTGGATGCCGAGACTTGCCACCGTTGTTGC
AGGCCAATCCGTTCACTTTGCACAAACTGCGATGCAAGACACTCAACAGCATGACGCCGTGGATGTTTTCGTCGGCGTCGACGTCGGTAAAGGCCAGCAT
CACGCCGTTGCACTCGATCGAAATGGCAAGCGTCTGTACAACAAGGCGCTACCCAACGACGAGGTCAAGCTGCGAGCCCTCATCGCCGAACTCAAGACTC
ACGGTCGACTGCTGTTCGTCGTCGATCAGCCTTCCACCATCGGTGCGCTTCCTGTAGCCGTCGCCCGCGCTGAAGGCGTACTCGTCGCCTATCTGCCCGG
ACTGGCCATGCGCCGCATCGCTGATTTGCACGCCGGCGAAGCCAAGACCGATGCCCGCGACGCCGCCATCATCGCCGAAGCCGCTCGCTCGATGCCGCAT
ACGCTGCGCTCGCTTCGACTGGCCGACGAGCAGCTCGCCGAACTCACCATGCTGTGCGGCTTCGATGACGACCTCGCCGCTCAGGTCACACAGACCAGCA
ACCGCATTCGCGGCCTGCTTACTCAAATCCATCCGGCGCTCGAGCGCGTTCTCGGACCGCGCCTCGACCATCCGGCGGTGCTCGATCTGCTTGAGCGCTA
TCCGTCGCCCGCCGCACTTGCCAGCACCACCGAGAAGACGCTCGCCAATCGCCTGACCAAGCTCGCTCCTCGCATGGGCAAAGGCTTGGCGGCCGAGATC
GTTCAGGCACTGAGTGAACAAGCCGTGACCGTGCCCGGCACGCAAGCCGCCACCATCGTCATGCCCCGTTTAGCCCAGCAGCTTGCGGCCTTGCGTAAGC
AACGCGACGAGGTCGCCGCCGAAGTTGAGCGACTGGTGCTTGCTCACCCTCTTTGGCCGGTCCTGACCAGCATGCCGGGAGTCGGCGTCAGGACCGCCGC
CAGACTCCTGACCGAAGTCGCCCATAAGGCCTTCGCTTCGGCTGCACACTTGGCGGCCTACGCTGGCCTTGCCCCGGTCACCCGGCGCTCAGGCTCGTCG
ATCCGTGGCGAGCATCCATCCAGACGGGGAAACAAGGTGCTCAAGCGCGCCTTGTTCCTATCCGCCTTCGCGGCCTTACGAGACCCAGTCTCACGGGCCT
ATTACTCCCGCAAGATCCAGCAAGGCAAGCGCCACAACCAAGCGCTGATCGCACTGGCACGGCGACGCTGCGACGTCCTGTTCGCCATGCTGCGCGACGG
CACCATTTACCAACCCAAGTCAGCCCCTAACGCTTGACGAAAGACATAGGGGCACCCC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1263 bp | 420 aa | 175 | 1437 | + | No |
Chemistry : DEDD
ORF sequence :
MPRLATVVAGQSVHFAQTAMQDTQQHDAVDVFVGVDVGKGQHHAVALDRNGKRLYNKALPNDEVKLRALIAELKTHGRLLFVVDQPSTIGALPVAVARAE
GVLVAYLPGLAMRRIADLHAGEAKTDARDAAIIAEAARSMPHTLRSLRLADEQLAELTMLCGFDDDLAAQVTQTSNRIRGLLTQIHPALERVLGPRLDHP
AVLDLLERYPSPAALASTTEKTLANRLTKLAPRMGKGLAAEIVQALSEQAVTVPGTQAATIVMPRLAQQLAALRKQRDEVAAEVERLVLAHPLWPVLTSM
PGVGVRTAARLLTEVAHKAFASAAHLAAYAGLAPVTRRSGSSIRGEHPSRRGNKVLKRALFLSAFAALRDPVSRAYYSRKIQQGKRHNQALIALARRRCD
VLFAMLRDGTIYQPKSAPNA
GVLVAYLPGLAMRRIADLHAGEAKTDARDAAIIAEAARSMPHTLRSLRLADEQLAELTMLCGFDDDLAAQVTQTSNRIRGLLTQIHPALERVLGPRLDHP
AVLDLLERYPSPAALASTTEKTLANRLTKLAPRMGKGLAAEIVQALSEQAVTVPGTQAATIVMPRLAQQLAALRKQRDEVAAEVERLVLAHPLWPVLTSM
PGVGVRTAARLLTEVAHKAFASAAHLAAYAGLAPVTRRSGSSIRGEHPSRRGNKVLKRALFLSAFAALRDPVSRAYYSRKIQQGKRHNQALIALARRRCD
VLFAMLRDGTIYQPKSAPNA
Blast result :
Comments
Copies of ISBma3 appear to be disrupted in Burkholderia mallei ATCC:23344, so we found a complete copy in Burkholderia cenocepacia AU 1054 chromosome 2.
ISBma3 is 90% aa similar to ISEc20.
ISBma3 is 90% aa similar to ISEc20.
References
1] Robert DeBoy (2005) Direct submission.
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Lykidis,A., LiPuma,J.J., Konstantinidis,K., Tiedje,J.M. and Richardson,P. (2006) Direct submission GenBank.
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Lykidis,A., LiPuma,J.J., Konstantinidis,K., Tiedje,J.M. and Richardson,P. (2006) Direct submission GenBank.