ISSpo6
- Family IS630
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_003911 | ND | Silicibacter pomeroyi | Silicibacter pomeroyi DSS-3 |
DNA section
IS Length : 1052 bp
Ends
IR Length : 11
IRL : GAGCATCGGACTGACTTTTTGAATCGATAGGATTCCCATGGGGAGTGATT
IRR : GAGCATCGGACATTTATTCTGCAACATATCCGGCAGCCTTGAAGTAGGCT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ATCAACACGC | TA | GGGGTCGATGTGAC | 2 |
DNA sequence
GAGCATCGGACTGACTTTTTGAATCGATAGGATTCCCATGGGGAGTGATTTGTGATTCACCATATCTGGAGGTGGATCATGGCGAAGTCCCTATCACTGG
ATATCCGCGAACGGGTTGTCGCCCTTGTTGGAGAGGGCCTGTCCTGTCGGGAAGCAGCTCGCCGCTTGCGGATATCTGCGGCAAGCGCGGTTCGGATTGT
GCAGAGGCACAAGGTGCGAGGGTCGGTTGCTCCGACACCCAGAGGCCGCCCGCGAGGCGGTGGCAAACTCGATGCGGTTTCGCGCTTCCTTCGGCGCGAG
ATCGAGGCCCGGCCTGACATGACGATGCCGGAGTTGGCCGATAGGCTCCGTGACATCCATGATGTTCGCGCCGATCCGGCGGAGTTGTCGCGGTATCTGC
GGCACCGGCTTGGGCTGACATATAAAAAAATCCCTCATCGCGACGGAAAGACGGGCCAAGCGGGTGCGCGCCGCGCGATACGACTGGCAGCACAGGCGGC
TGCCGAGGATGCGTGTTGAACCGCACCGGCTGGTTTTCATCGACGAGACCGCGGTCACGACCAAGATGACCCGTTTGCGCGGACGCTGCCCGCGCGGAGC
GCGACTGGAAGCTGATGCGCCATTTGGACACTGGCGCACGCAGACTTTCATCGCCGGACTTCGGGTCGATGAATTGACCGCGCCCTGGATGCTCGACGGG
CCGATGAACCGCGCCGCGTTCGAGGCCTATATCGAGACCCAACTCGCGCCCACGCTCGCACCCGGGGACGTGGTGATCGCCGACAACCTCGCAGCGCACA
AATCGAAGCGGGTTCAGGACCTGCTCCACGACCAAGACAACTGGATGCTCTTCCTGCCGGCCTACAGCCCTGACCTTAACCCCATCGAAATGGCCTATTC
CAAACTCAAGGCCCACCTCCGAAGGATCGCCGCCCGGACCTTCGATGCCTTGACCGAAGCCGTCGGCTCAATCTGCGATCTCTTCTCGTGGCAAGAATGC
GAAGCCTACTTCAAGGCTGCCGGATATGTTGCAGAATAAATGTCCGATGCTC
ATATCCGCGAACGGGTTGTCGCCCTTGTTGGAGAGGGCCTGTCCTGTCGGGAAGCAGCTCGCCGCTTGCGGATATCTGCGGCAAGCGCGGTTCGGATTGT
GCAGAGGCACAAGGTGCGAGGGTCGGTTGCTCCGACACCCAGAGGCCGCCCGCGAGGCGGTGGCAAACTCGATGCGGTTTCGCGCTTCCTTCGGCGCGAG
ATCGAGGCCCGGCCTGACATGACGATGCCGGAGTTGGCCGATAGGCTCCGTGACATCCATGATGTTCGCGCCGATCCGGCGGAGTTGTCGCGGTATCTGC
GGCACCGGCTTGGGCTGACATATAAAAAAATCCCTCATCGCGACGGAAAGACGGGCCAAGCGGGTGCGCGCCGCGCGATACGACTGGCAGCACAGGCGGC
TGCCGAGGATGCGTGTTGAACCGCACCGGCTGGTTTTCATCGACGAGACCGCGGTCACGACCAAGATGACCCGTTTGCGCGGACGCTGCCCGCGCGGAGC
GCGACTGGAAGCTGATGCGCCATTTGGACACTGGCGCACGCAGACTTTCATCGCCGGACTTCGGGTCGATGAATTGACCGCGCCCTGGATGCTCGACGGG
CCGATGAACCGCGCCGCGTTCGAGGCCTATATCGAGACCCAACTCGCGCCCACGCTCGCACCCGGGGACGTGGTGATCGCCGACAACCTCGCAGCGCACA
AATCGAAGCGGGTTCAGGACCTGCTCCACGACCAAGACAACTGGATGCTCTTCCTGCCGGCCTACAGCCCTGACCTTAACCCCATCGAAATGGCCTATTC
CAAACTCAAGGCCCACCTCCGAAGGATCGCCGCCCGGACCTTCGATGCCTTGACCGAAGCCGTCGGCTCAATCTGCGATCTCTTCTCGTGGCAAGAATGC
GAAGCCTACTTCAAGGCTGCCGGATATGTTGCAGAATAAATGTCCGATGCTC
Recoding section
- Recoding by frameshift
- Frame
- Type
- Experimentally demonstrated
Stimulators :
- Shine-Dalgarno sequence :
- Secondary structure :
Recoding motif :
Protein section
ORF number : 3
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
441 bp | 146 aa | 79 | 519 | + | No |
Description : First part of the transposase
ORF sequence :
MAKSLSLDIRERVVALVGEGLSCREAARRLRISAASAVRIVQRHKVRGSVAPTPRGRPRGGGKLDAVSRFLRREIEARPDMTMPELADRLRDIHDVRADP
AELSRYLRHRLGLTYKKIPHRDGKTGQAGARRAIRLAAQAAAEDAC
AELSRYLRHRLGLTYKKIPHRDGKTGQAGARRAIRLAAQAAAEDAC
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
621 bp | 206 aa | 419 | 1039 | + | No |
Description : Second part of the transposase
ORF sequence :
HIKKSLIATERRAKRVRAARYDWQHRRLPRMRVEPHRLVFIDETAVTTKMTRLRGRCPRGARLEADAPFGHWRTQTFIAGLRVDELTAPWMLDGPMNRAA
FEAYIETQLAPTLAPGDVVIADNLAAHKSKRVQDLLHDQDNWMLFLPAYSPDLNPIEMAYSKLKAHLRRIAARTFDALTEAVGSICDLFSWQECEAYFKA
AGYVAE
FEAYIETQLAPTLAPGDVVIADNLAAHKSKRVQDLLHDQDNWMLFLPAYSPDLNPIEMAYSKLKAHLRRIAARTFDALTEAVGSICDLFSWQECEAYFKA
AGYVAE
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
961 bp | 319 aa | 79 | 1039 | + | Yes |
Chemistry : DDE
ORF sequence :
MAKSLSLDIRERVVALVGEGLSCREAARRLRISAASAVRIVQRHKVRGSVAPTPRGRPRGGGKLDAVSRFLRREIEARPDMTMPELADRLRDIHDVRADP
AELSRYLRHRLGLTYKKSLIATERRAKRVRAARYDWQHRRLPRMRVEPHRLVFIDETAVTTKMTRLRGRCPRGARLEADAPFGHWRTQTFIAGLRVDELT
APWMLDGPMNRAAFEAYIETQLAPTLAPGDVVIADNLAAHKSKRVQDLLHDQDNWMLFLPAYSPDLNPIEMAYSKLKAHLRRIAARTFDALTEAVGSICD
LFSWQECEAYFKAAGYVAE
AELSRYLRHRLGLTYKKSLIATERRAKRVRAARYDWQHRRLPRMRVEPHRLVFIDETAVTTKMTRLRGRCPRGARLEADAPFGHWRTQTFIAGLRVDELT
APWMLDGPMNRAAFEAYIETQLAPTLAPGDVVIADNLAAHKSKRVQDLLHDQDNWMLFLPAYSPDLNPIEMAYSKLKAHLRRIAARTFDALTEAVGSICD
LFSWQECEAYFKAAGYVAE
Blast result :
Comments
There is one copy of ISSpo6 in Silicibacter pomeroyi DSS-3.
ISSpo6 is 55%(ORFAB) aa similar to ISRm10. The third ORF is a putative ORFAB transposase reconstructed in silico by possible -1 frameshift.
ISSpo6 is 55%(ORFAB) aa similar to ISRm10. The third ORF is a putative ORFAB transposase reconstructed in silico by possible -1 frameshift.
References
1] Moran,M.A., Buchan,A., Gonzalez,J.M., Heidelberg,J.F., Whitman,W.B., Kiene,R.P., Henriksen,J.R., King,G.M., Belas,R., Fuqua,C., Brinkac,L., Lewis,M., Johri,S., Weaver,B., Pai,G., Eisen,J.A., Rahe,E., Sheldon,W.M., Ye,W., Miller,T.R., Carlton,J., Rasko,D.A., Paulsen,I.T., Ren,Q., Daugherty,S.C., Deboy,R.T., Dodson,R.J., Durkin,A.S., Madupu,R., Nelson,W.C., Sullivan,S.A., Rosovitz,M.J., Haft,D.H., Selengut,J. and Ward,N. (2004) Nature 432 (7019), 910-913