ISSpal1
- Family IS481
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_008048 | ND | Sphingopyxis alaskensis | Sphingopyxis alaskensis RB2256 |
DNA section
IS Length : 1002 bp
Ends
IR Length : 24
IRL : TGTTTGGTCCCAGCATGTGATGGTGTAGACTTGTCGCCGTTGCAGCGGAG
IRR : TGTTTGGTCCCAGCATGTGATGGTTGGGTTTGACGATAAAGACATCGGGC
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| TAAATTGTCACTACAG | CCTAGC | GCAGCCCCAGGCTCTTG | 6 |
DNA sequence
TGTTTGGTCCCAGCATGTGATGGTGTAGACTTGTCGCCGTTGCAGCGGAGGGAGCTATGGGACAGATTTTACACGGGAGCGCCAAGACCACGCACGCCAT
TCGAGGCGAGCTACAGCGATCGCAAGCTTCGGTCGCGAGCCTCGCGAGGAAGTACGGGATCAACGAGAAGACCGTCTTGAAGTGGCGCCATCGGCAGTCT
GTGGACGACATGCCGATGGGGCCGAAGGAGCGCCGCAGCACCGTCCTCTCGCCTATGGAAGAAGCTGCCATCGTGGCGTTGCGGGTTCAGGCGCGGTTGC
CGCTCGACGACGTCTACATCGCGCTAAAGGACGTGATCCCGCAGTTGACGCGCTCGTCGCTGCATCGCTGCCTGCAACGGCATGGCATCAGCCGCCTGCC
CAAAGCGGACCGCGAGAAGCCGAAGAAGTTCAAGGATTATGAGATCGGCTACTTCCACATCGACATCGCCGAGCTACGCTATGAGGGCGGCAAGGCCTTC
CTCTATGTGGCGGTGGACCGCACCTCGAAGCTGGTCTTCGCCCGCATCTATCGCAAGGCCACAAAGCTTGCCGCCGCAGCTTTCCTCAAGGTGCTGGTCA
AGACCGTGCCTTACAGGATCCACACCGTGCTGACCGACAATGGCGTCCAGTTCGTCCAGCCCCAGCGCGGCCAGAGCCGGCAATGGCTGATCCACATCTT
CGAGCGGGTCTGCCTCGAAAACGGCATCGAGCATCGGCTGACCAAGCCCTACCACCCATGGACCAATGGTCAAGCCGAGCGGATGGTCCGAACCATCAAG
GAAGCGACCGTCAAATCCTTCCATTATGCCTCGATCCAGGAACTGCGACGACACGTCAGCGACTGGCTGATCGCCTACAACTTCGCCAAGCAGCTCAAGG
CTCTCAAGTTCAGGACACCATATGAAGCCATCGAGGAACTCTGGAAATCAAAGCCCGATGTCTTTATCGTCAAACCCAACCATCACATGCTGGGACCAAA
CA
TCGAGGCGAGCTACAGCGATCGCAAGCTTCGGTCGCGAGCCTCGCGAGGAAGTACGGGATCAACGAGAAGACCGTCTTGAAGTGGCGCCATCGGCAGTCT
GTGGACGACATGCCGATGGGGCCGAAGGAGCGCCGCAGCACCGTCCTCTCGCCTATGGAAGAAGCTGCCATCGTGGCGTTGCGGGTTCAGGCGCGGTTGC
CGCTCGACGACGTCTACATCGCGCTAAAGGACGTGATCCCGCAGTTGACGCGCTCGTCGCTGCATCGCTGCCTGCAACGGCATGGCATCAGCCGCCTGCC
CAAAGCGGACCGCGAGAAGCCGAAGAAGTTCAAGGATTATGAGATCGGCTACTTCCACATCGACATCGCCGAGCTACGCTATGAGGGCGGCAAGGCCTTC
CTCTATGTGGCGGTGGACCGCACCTCGAAGCTGGTCTTCGCCCGCATCTATCGCAAGGCCACAAAGCTTGCCGCCGCAGCTTTCCTCAAGGTGCTGGTCA
AGACCGTGCCTTACAGGATCCACACCGTGCTGACCGACAATGGCGTCCAGTTCGTCCAGCCCCAGCGCGGCCAGAGCCGGCAATGGCTGATCCACATCTT
CGAGCGGGTCTGCCTCGAAAACGGCATCGAGCATCGGCTGACCAAGCCCTACCACCCATGGACCAATGGTCAAGCCGAGCGGATGGTCCGAACCATCAAG
GAAGCGACCGTCAAATCCTTCCATTATGCCTCGATCCAGGAACTGCGACGACACGTCAGCGACTGGCTGATCGCCTACAACTTCGCCAAGCAGCTCAAGG
CTCTCAAGTTCAGGACACCATATGAAGCCATCGAGGAACTCTGGAAATCAAAGCCCGATGTCTTTATCGTCAAACCCAACCATCACATGCTGGGACCAAA
CA
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 951 bp | 316 aa | 57 | 1007 | + | No |
Chemistry : DDE
ORF sequence :
MGQILHGSAKTTHAIRGELQRSQASVASLARKYGINEKTVLKWRHRQSVDDMPMGPKERRSTVLSPMEEAAIVALRVQARLPLDDVYIALKDVIPQLTRS
SLHRCLQRHGISRLPKADREKPKKFKDYEIGYFHIDIAELRYEGGKAFLYVAVDRTSKLVFARIYRKATKLAAAAFLKVLVKTVPYRIHTVLTDNGVQFV
QPQRGQSRQWLIHIFERVCLENGIEHRLTKPYHPWTNGQAERMVRTIKEATVKSFHYASIQELRRHVSDWLIAYNFAKQLKALKFRTPYEAIEELWKSKP
DVFIVKPNHHMLGPNN
SLHRCLQRHGISRLPKADREKPKKFKDYEIGYFHIDIAELRYEGGKAFLYVAVDRTSKLVFARIYRKATKLAAAAFLKVLVKTVPYRIHTVLTDNGVQFV
QPQRGQSRQWLIHIFERVCLENGIEHRLTKPYHPWTNGQAERMVRTIKEATVKSFHYASIQELRRHVSDWLIAYNFAKQLKALKFRTPYEAIEELWKSKP
DVFIVKPNHHMLGPNN
Blast result :
Comments
ISSpal1 is 50 % (ORF) aa similar to ISMyma5. The stop codon is in the DR.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Brettin,T., Bruce,D., Han,C., Tapia,R., Munk,A.C., Chertkov,O., Gilna,P., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Cavicchioli,R., Robb,F., Ertan,H., Schut,F., Ting,L.M. and Richardson,P.(2006) Direct submission GenBank.