ISNme5

  • Family IS110
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_008767 ND Neisseria meningitidis
Neisseria meningitidis FAM18
DNA section
IS Length : 1143 bp

Ends


Left end : TATAGTGAATTAACAAAAACCAGTACGGCGTTACCTCGCCTTAGCTCAAAGAGAACGATTCTCTAAGGTGCTGAAGCACCAAGTGAATCGGTTCCGTGCT
Right end : GTGATTATTTTGCCGAAAACGATACTGCCGAAAACGGTATCCGGACGGCTTGATTTGAGTTTTGGTATTTTTGCCCGACGGGGTGAAAAATACAGTTGCT

Insertion site


Left flankDirect repeatRight flankDR Length
GATACCATTACGCAGGACGCGCCAAACAGACA0

DNA sequence

TATAGTGAATTAACAAAAACCAGTACGGCGTTACCTCGCCTTAGCTCAAAGAGAACGATTCTCTAAGGTGCTGAAGCACCAAGTGAATCGGTTCCGTGCT
ATTTGTACTGTCTTCTGCTTCGCCGCCTTGTCCTGATTTTTGTTAATCCGCTATATCGACATCGCCAAACGAAACTTCGTCATCGCCGTTTCGTCTTTGT
CTAAAACCAAAACCGAAACCAACAACCCCAAAGGTATCGCCCATACTATCGAATACCTTAAAAAACACAAGGTCGCCCTCGTCGTGACGGAAAGTACCGG
CGGTCTCGAAATCCCCGCCGCCAAAGCCATCCGCCGAGCAGGCATAGCCGTGATTATCGCCAACCCGCGTCAGACGCATCAGTTTGCCCAATCGCAGCCG
CTGACCAAAACCGACGCCAAAGATGCCAAAATGCCCGCCTTCTTCGCACAGATGACGGCACAGAAAGAAGATTCGCAAACCATGCCCTACCAACCGCCCA
CCGAAGCGGAAGAAGTGTTGGAAGCCTTGGTTAACCGCCGCAACCAACCGGCGGATATGCGGACTGCCGAGAAAAACCGTCTGCATCAGGTTCACGAAAC
GCAAGTCGGAAGCGTCAAACAACTGATTGCCCATTTTGACCGGCTGATTGACGAATTGGACAAACAAATCGACGACCACACCCACACGCATTTTGACGGC
AAAGCCCAAGTGGCGGAGCAAATCAAAGGCATCGGTTCGATAACGACGGCTACGCTGATGGTGATGTTGCCCGAATTGGGGCGGCTGTCGCACAAACGGA
TAGCGGGTTTGGCCGGCATTGCCCCGCACCCGAGGGAGAGCGGGGAAACCAAATTCAAAAGCCGCTGCTTCGGCGGAAGGTCTGCGGTACGTAAGGCGCT
GTATATGGCTACCGTGGCAGCGACACGTTTTGAACCGCTTATTCGGGATTTCTACCAACGCCTGCTGTCCGAGGGTAAGCCGTATAAGGTTGCCGTTACG
GCATGTATGCGCAAACTGCTGACGATATCGAATGCCCGGATGCGTGATTATTTTGCCGAAAACGATACTGCCGAAAACGGTATCCGGACGGCTTGATTTG
AGTTTTGGTATTTTTGCCCGACGGGGTGAAAAATACAGTTGCT
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
957 bp318 aa1401096+No
ORF function : Transposase
Chemistry : DEDD

ORF sequence :

LLIRYIDIAKRNFVIAVSSLSKTKTETNNPKGIAHTIEYLKKHKVALVVTESTGGLEIPAAKAIRRAGIAVIIANPRQTHQFAQSQPLTKTDAKDAKMPA
FFAQMTAQKEDSQTMPYQPPTEAEEVLEALVNRRNQPADMRTAEKNRLHQVHETQVGSVKQLIAHFDRLIDELDKQIDDHTHTHFDGKAQVAEQIKGIGS
ITTATLMVMLPELGRLSHKRIAGLAGIAPHPRESGETKFKSRCFGGRSAVRKALYMATVAATRFEPLIRDFYQRLLSEGKPYKVAVTACMRKLLTISNAR
MRDYFAENDTAENGIRTA

 

Blast result :
Comments
ISNme5 is 57% aa similar to ISGme8.
References
1] Bentley,S.D., Vernikos,G.S., Snyder,L.A., Churcher,C., Arrowsmith,C., Chillingworth,T., Cronin,A., Davis,P.H., Holroyd,N.E., Jagels,K., Maddison,M., Moule,S., Rabbinowitsch,E., Sharp,S., Unwin,L., Whitehead,S., Quail,M.A., Achtman,M., Barrell,B., Saunders,N.J. and Parkhill,J.(2007) PLoS Genet. 3 (2), E23.