ISNme5
- Family IS110
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_008767 | ND | Neisseria meningitidis | Neisseria meningitidis FAM18 |
DNA section
IS Length : 1143 bp
Ends
Left end : TATAGTGAATTAACAAAAACCAGTACGGCGTTACCTCGCCTTAGCTCAAAGAGAACGATTCTCTAAGGTGCTGAAGCACCAAGTGAATCGGTTCCGTGCT
Right end : GTGATTATTTTGCCGAAAACGATACTGCCGAAAACGGTATCCGGACGGCTTGATTTGAGTTTTGGTATTTTTGCCCGACGGGGTGAAAAATACAGTTGCT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GATACCATTACGCAGG | ACGCGCCAAACAGACA | 0 |
DNA sequence
TATAGTGAATTAACAAAAACCAGTACGGCGTTACCTCGCCTTAGCTCAAAGAGAACGATTCTCTAAGGTGCTGAAGCACCAAGTGAATCGGTTCCGTGCT
ATTTGTACTGTCTTCTGCTTCGCCGCCTTGTCCTGATTTTTGTTAATCCGCTATATCGACATCGCCAAACGAAACTTCGTCATCGCCGTTTCGTCTTTGT
CTAAAACCAAAACCGAAACCAACAACCCCAAAGGTATCGCCCATACTATCGAATACCTTAAAAAACACAAGGTCGCCCTCGTCGTGACGGAAAGTACCGG
CGGTCTCGAAATCCCCGCCGCCAAAGCCATCCGCCGAGCAGGCATAGCCGTGATTATCGCCAACCCGCGTCAGACGCATCAGTTTGCCCAATCGCAGCCG
CTGACCAAAACCGACGCCAAAGATGCCAAAATGCCCGCCTTCTTCGCACAGATGACGGCACAGAAAGAAGATTCGCAAACCATGCCCTACCAACCGCCCA
CCGAAGCGGAAGAAGTGTTGGAAGCCTTGGTTAACCGCCGCAACCAACCGGCGGATATGCGGACTGCCGAGAAAAACCGTCTGCATCAGGTTCACGAAAC
GCAAGTCGGAAGCGTCAAACAACTGATTGCCCATTTTGACCGGCTGATTGACGAATTGGACAAACAAATCGACGACCACACCCACACGCATTTTGACGGC
AAAGCCCAAGTGGCGGAGCAAATCAAAGGCATCGGTTCGATAACGACGGCTACGCTGATGGTGATGTTGCCCGAATTGGGGCGGCTGTCGCACAAACGGA
TAGCGGGTTTGGCCGGCATTGCCCCGCACCCGAGGGAGAGCGGGGAAACCAAATTCAAAAGCCGCTGCTTCGGCGGAAGGTCTGCGGTACGTAAGGCGCT
GTATATGGCTACCGTGGCAGCGACACGTTTTGAACCGCTTATTCGGGATTTCTACCAACGCCTGCTGTCCGAGGGTAAGCCGTATAAGGTTGCCGTTACG
GCATGTATGCGCAAACTGCTGACGATATCGAATGCCCGGATGCGTGATTATTTTGCCGAAAACGATACTGCCGAAAACGGTATCCGGACGGCTTGATTTG
AGTTTTGGTATTTTTGCCCGACGGGGTGAAAAATACAGTTGCT
ATTTGTACTGTCTTCTGCTTCGCCGCCTTGTCCTGATTTTTGTTAATCCGCTATATCGACATCGCCAAACGAAACTTCGTCATCGCCGTTTCGTCTTTGT
CTAAAACCAAAACCGAAACCAACAACCCCAAAGGTATCGCCCATACTATCGAATACCTTAAAAAACACAAGGTCGCCCTCGTCGTGACGGAAAGTACCGG
CGGTCTCGAAATCCCCGCCGCCAAAGCCATCCGCCGAGCAGGCATAGCCGTGATTATCGCCAACCCGCGTCAGACGCATCAGTTTGCCCAATCGCAGCCG
CTGACCAAAACCGACGCCAAAGATGCCAAAATGCCCGCCTTCTTCGCACAGATGACGGCACAGAAAGAAGATTCGCAAACCATGCCCTACCAACCGCCCA
CCGAAGCGGAAGAAGTGTTGGAAGCCTTGGTTAACCGCCGCAACCAACCGGCGGATATGCGGACTGCCGAGAAAAACCGTCTGCATCAGGTTCACGAAAC
GCAAGTCGGAAGCGTCAAACAACTGATTGCCCATTTTGACCGGCTGATTGACGAATTGGACAAACAAATCGACGACCACACCCACACGCATTTTGACGGC
AAAGCCCAAGTGGCGGAGCAAATCAAAGGCATCGGTTCGATAACGACGGCTACGCTGATGGTGATGTTGCCCGAATTGGGGCGGCTGTCGCACAAACGGA
TAGCGGGTTTGGCCGGCATTGCCCCGCACCCGAGGGAGAGCGGGGAAACCAAATTCAAAAGCCGCTGCTTCGGCGGAAGGTCTGCGGTACGTAAGGCGCT
GTATATGGCTACCGTGGCAGCGACACGTTTTGAACCGCTTATTCGGGATTTCTACCAACGCCTGCTGTCCGAGGGTAAGCCGTATAAGGTTGCCGTTACG
GCATGTATGCGCAAACTGCTGACGATATCGAATGCCCGGATGCGTGATTATTTTGCCGAAAACGATACTGCCGAAAACGGTATCCGGACGGCTTGATTTG
AGTTTTGGTATTTTTGCCCGACGGGGTGAAAAATACAGTTGCT
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
957 bp | 318 aa | 140 | 1096 | + | No |
Chemistry : DEDD
ORF sequence :
LLIRYIDIAKRNFVIAVSSLSKTKTETNNPKGIAHTIEYLKKHKVALVVTESTGGLEIPAAKAIRRAGIAVIIANPRQTHQFAQSQPLTKTDAKDAKMPA
FFAQMTAQKEDSQTMPYQPPTEAEEVLEALVNRRNQPADMRTAEKNRLHQVHETQVGSVKQLIAHFDRLIDELDKQIDDHTHTHFDGKAQVAEQIKGIGS
ITTATLMVMLPELGRLSHKRIAGLAGIAPHPRESGETKFKSRCFGGRSAVRKALYMATVAATRFEPLIRDFYQRLLSEGKPYKVAVTACMRKLLTISNAR
MRDYFAENDTAENGIRTA
FFAQMTAQKEDSQTMPYQPPTEAEEVLEALVNRRNQPADMRTAEKNRLHQVHETQVGSVKQLIAHFDRLIDELDKQIDDHTHTHFDGKAQVAEQIKGIGS
ITTATLMVMLPELGRLSHKRIAGLAGIAPHPRESGETKFKSRCFGGRSAVRKALYMATVAATRFEPLIRDFYQRLLSEGKPYKVAVTACMRKLLTISNAR
MRDYFAENDTAENGIRTA
Blast result :
Comments
ISNme5 is 57% aa similar to ISGme8.
References
1] Bentley,S.D., Vernikos,G.S., Snyder,L.A., Churcher,C., Arrowsmith,C., Chillingworth,T., Cronin,A., Davis,P.H., Holroyd,N.E., Jagels,K., Maddison,M., Moule,S., Rabbinowitsch,E., Sharp,S., Unwin,L., Whitehead,S., Quail,M.A., Achtman,M., Barrell,B., Saunders,N.J. and Parkhill,J.(2007) PLoS Genet. 3 (2), E23.