ISPst3
- Family IS21
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AB088753 | ND | Pseudomonas stutzeri | Pseudomonas stutzeri OM1 Pseudomonas aeruginosa ST233 |
DNA section
IS Length : 2606 bp
Ends
IR Length : 23/27
IRL : TGTTGCCGCTGACCGAAAACTGACCCAGTAGAGGCTGTTCTGCCGACTGA
IRR : TGTTGGCGCTGATGGAAAATTGACCCACCCTGCCGATTGAAATTTGACCC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AGACGTCACT | GTGCTGCTGCATGG | 0 | |
GACCCTGGCGAGAATC | CAGTCATGG | ATCTCGCTTTCAAGC | 9 |
DNA sequence
TGTTGCCGCTGACCGAAAACTGACCCAGTAGAGGCTGTTCTGCCGACTGAAAACTGACCCAGGTGTTCAACTGCTTCTGCTCAATTTTTGAGCAGGAGAA
CACAGGGTGATCAGTATGGAAATGATGGGCAAAATTCGGCGGATGTATTTCCGCGACAAGCTGTCGCTGCATGAGATAGCCAAGCGCACCGGGCTGGCGC
GCAACACGATTCGCAAGTGGGTCAGAGCACCTGAGGCCAAGCAGCCGGTGTACCAACGCCGCGCGATCTTTAACAAACTCAGCCCTTTTCACGTCACGCC
AGAGCAGGCGCTAAAAGCCGATTCGCTGCGCCCCAAGCAACAGCGGCGCAGTGCCAAGGCGCTGTTGGCGCAAATCAAAGCCGATGGTTATGACGGTGGC
TACAGCCAGCTCACCGCGTTTATCCGTGCCTGGCGAGGGGGACAGGGCAAGGCGTCGCAGGCCTTTGTGCCGCTGACCTTTGCTCTTGGCGAGGCGTTTC
AGTTTGACTGGAGCGAGGAAGGCTTGCTGGTCGGCGGCATTTACCGGCGTATGCAGGTGGCACATCTGAAGCTGTGTGCCAGCCGTGCGTTCTGGCTTGT
GGCGTATCCGAGCCAGGGCCATGAGATGTTATTTGACGCCCATACACGCTCGTTCGGCGCCTTGGGCGGCGTGCCGCGCCGGGGCATCTACGACAACATG
AAGACCGCCGTCGACAAGGTCAATAAGGGCAAAGGCCGGGCGGTGAATGCACGCTTTGCGGTGATGTGCGCGCATTACCTGTTCGATCCGGACTTCTGCA
ACGTCGCCGCTGGTTGGGAAAAGGGCATCGTTGAAAAGAACGTGCAAGACAGCCGCAGGCGTATCTGGCTAGACGCCCAGGACTGTCAGTTTCACTCCTT
CGAGGAACTCAATGCCTGGCTGGGCCAGCGCTGCCGCGCGCTTTGGAACGAGCTGACGCACCCTCAATACAGCGGGCTGAGTGTGGCCGAAGTGCTTGAG
TTGGAGCGCGCTGAACTGATGCCTGTGCCAGCGCCATTCGACGGTTACGTCGAGCGGCCTGCGCGGGTCTCCAGCACCTGCTTGGTCAGCGTCGGGCGCA
ACCGCTACTCGGTGCCGTGTGAGTACGCGGGTAAGTGGGTCAGCAGCCGTTTGTATCCGACGCGAATCGAGGTGGTGGCTGACGACGCGCTGATCGCCAG
CCATGTCCGCTTGCTGGATCGCGACCAGGTCAGCTATGACTGGCAGCACTACCTCCCGCTGATCGAACGCAAGCCCGGTGCGCTGCGCAACGGCGCGCCC
TTTGCTGATCTGCCGGCGCCGCTGCGTCAGCTTAAGCACGGTCTGGGGCGTCATGCCGGCGGTGACCGGATCATGGCGCAAGTTCTGGCTGCCGTACCGG
TCGCCGGGCTCGATGCCGTGCTGGTAGCCGTTGAGCTGGTACTGGAGAGCGGCAGCCTGAGCGCCGAACACATCCTCAATGTCGTGGCGCGCCTGGCCGC
GACCGAACCACCACCCAGCGTCGAAACCCACTTGTCGCTCAAGGAAGCCCCCGTCGCTAACACGGCGCGCTACGACCGCCTGCGTGGCCAGGCCGAGGAG
GTCGGTCATGCGTGATTTGATGGCGGAACTCAAGGAGCTGCGCCTGCACGGCATGGCCACGGCCTGGGCGGAGTTAACTGCACAGGGTGAGTCGAACACA
GCCTCGTCCAAGTGGCTGCTCGAACACCTGCTGGAACAAGAGCACACAGATCGCGCCATGCGCTCGGTGAGCCACCAGATGAACATGGCCAAGCTGCCGA
TGCACCGCGATCTGGCCAGCTTCGATTTCAACGCCTCTAGCGCCGACGCACGCCTGATCAGCGAGCTGGCCAGCCTGGCCTTTACCGACACCGCGCAGAA
CGTGGTGCTGATCGGTGGGCCAGGCACCGGTAAAACCCACCTAGCCACCGCGCTGGCCGTGTCCGGCATCACCCGGCATGGCAAGCGCGTGCGCTTCTAC
TCCACGGTCGATCTGGTCAATCTGCTGGAGCGCGAAAAACACGACGGCAAAGCCGGGCGGATCGCCCAGGCACTGCTGCGCATGGATCTGGTCATCCTCG
ACGAACTGGGTTATCTGCCGTTCAGCCAGGCTGGCGGTGCGTTGCTGTTTCACCTGCTGTCCAAGCTGTACGAACACACCAGCGTGGTGATCACCACCAA
CCTGAGCTTCGCCGAATGGTCGAGCGTGTTCGGCGACGCCAAGATGACCACCGCCCTGCTGGATCGGCTGACCCACCACTGCCACATCGTCGAAACCGGT
AACGAGTCCTATCGCCTGCAACACAGTAGCTTGGCGGCCCAGGCCAAGATCAAATCACGGGAGCGAAAGCGTAAGGGCGGCCAGGAACCGGAGGACGATG
AGTCGTTCTGATTTCATGGTGACGACGGCCTGCTGCATGGCTGCATGTGGCAGGTCTTCAACAGCTGAACTGGGACAGCGAGGGAGTGGGTTCAAAAAGC
AGCTGCGCTGGTAGACTTATCCACAGTTGCTGGTAACAAAATCAGCAATCCGCCCTGGGTCAAATTTCAATCGGCAGGGTGGGTCAATTTTCCATCAGCG
CCAACA
CACAGGGTGATCAGTATGGAAATGATGGGCAAAATTCGGCGGATGTATTTCCGCGACAAGCTGTCGCTGCATGAGATAGCCAAGCGCACCGGGCTGGCGC
GCAACACGATTCGCAAGTGGGTCAGAGCACCTGAGGCCAAGCAGCCGGTGTACCAACGCCGCGCGATCTTTAACAAACTCAGCCCTTTTCACGTCACGCC
AGAGCAGGCGCTAAAAGCCGATTCGCTGCGCCCCAAGCAACAGCGGCGCAGTGCCAAGGCGCTGTTGGCGCAAATCAAAGCCGATGGTTATGACGGTGGC
TACAGCCAGCTCACCGCGTTTATCCGTGCCTGGCGAGGGGGACAGGGCAAGGCGTCGCAGGCCTTTGTGCCGCTGACCTTTGCTCTTGGCGAGGCGTTTC
AGTTTGACTGGAGCGAGGAAGGCTTGCTGGTCGGCGGCATTTACCGGCGTATGCAGGTGGCACATCTGAAGCTGTGTGCCAGCCGTGCGTTCTGGCTTGT
GGCGTATCCGAGCCAGGGCCATGAGATGTTATTTGACGCCCATACACGCTCGTTCGGCGCCTTGGGCGGCGTGCCGCGCCGGGGCATCTACGACAACATG
AAGACCGCCGTCGACAAGGTCAATAAGGGCAAAGGCCGGGCGGTGAATGCACGCTTTGCGGTGATGTGCGCGCATTACCTGTTCGATCCGGACTTCTGCA
ACGTCGCCGCTGGTTGGGAAAAGGGCATCGTTGAAAAGAACGTGCAAGACAGCCGCAGGCGTATCTGGCTAGACGCCCAGGACTGTCAGTTTCACTCCTT
CGAGGAACTCAATGCCTGGCTGGGCCAGCGCTGCCGCGCGCTTTGGAACGAGCTGACGCACCCTCAATACAGCGGGCTGAGTGTGGCCGAAGTGCTTGAG
TTGGAGCGCGCTGAACTGATGCCTGTGCCAGCGCCATTCGACGGTTACGTCGAGCGGCCTGCGCGGGTCTCCAGCACCTGCTTGGTCAGCGTCGGGCGCA
ACCGCTACTCGGTGCCGTGTGAGTACGCGGGTAAGTGGGTCAGCAGCCGTTTGTATCCGACGCGAATCGAGGTGGTGGCTGACGACGCGCTGATCGCCAG
CCATGTCCGCTTGCTGGATCGCGACCAGGTCAGCTATGACTGGCAGCACTACCTCCCGCTGATCGAACGCAAGCCCGGTGCGCTGCGCAACGGCGCGCCC
TTTGCTGATCTGCCGGCGCCGCTGCGTCAGCTTAAGCACGGTCTGGGGCGTCATGCCGGCGGTGACCGGATCATGGCGCAAGTTCTGGCTGCCGTACCGG
TCGCCGGGCTCGATGCCGTGCTGGTAGCCGTTGAGCTGGTACTGGAGAGCGGCAGCCTGAGCGCCGAACACATCCTCAATGTCGTGGCGCGCCTGGCCGC
GACCGAACCACCACCCAGCGTCGAAACCCACTTGTCGCTCAAGGAAGCCCCCGTCGCTAACACGGCGCGCTACGACCGCCTGCGTGGCCAGGCCGAGGAG
GTCGGTCATGCGTGATTTGATGGCGGAACTCAAGGAGCTGCGCCTGCACGGCATGGCCACGGCCTGGGCGGAGTTAACTGCACAGGGTGAGTCGAACACA
GCCTCGTCCAAGTGGCTGCTCGAACACCTGCTGGAACAAGAGCACACAGATCGCGCCATGCGCTCGGTGAGCCACCAGATGAACATGGCCAAGCTGCCGA
TGCACCGCGATCTGGCCAGCTTCGATTTCAACGCCTCTAGCGCCGACGCACGCCTGATCAGCGAGCTGGCCAGCCTGGCCTTTACCGACACCGCGCAGAA
CGTGGTGCTGATCGGTGGGCCAGGCACCGGTAAAACCCACCTAGCCACCGCGCTGGCCGTGTCCGGCATCACCCGGCATGGCAAGCGCGTGCGCTTCTAC
TCCACGGTCGATCTGGTCAATCTGCTGGAGCGCGAAAAACACGACGGCAAAGCCGGGCGGATCGCCCAGGCACTGCTGCGCATGGATCTGGTCATCCTCG
ACGAACTGGGTTATCTGCCGTTCAGCCAGGCTGGCGGTGCGTTGCTGTTTCACCTGCTGTCCAAGCTGTACGAACACACCAGCGTGGTGATCACCACCAA
CCTGAGCTTCGCCGAATGGTCGAGCGTGTTCGGCGACGCCAAGATGACCACCGCCCTGCTGGATCGGCTGACCCACCACTGCCACATCGTCGAAACCGGT
AACGAGTCCTATCGCCTGCAACACAGTAGCTTGGCGGCCCAGGCCAAGATCAAATCACGGGAGCGAAAGCGTAAGGGCGGCCAGGAACCGGAGGACGATG
AGTCGTTCTGATTTCATGGTGACGACGGCCTGCTGCATGGCTGCATGTGGCAGGTCTTCAACAGCTGAACTGGGACAGCGAGGGAGTGGGTTCAAAAAGC
AGCTGCGCTGGTAGACTTATCCACAGTTGCTGGTAACAAAATCAGCAATCCGCCCTGGGTCAAATTTCAATCGGCAGGGTGGGTCAATTTTCCATCAGCG
CCAACA
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1509 bp | 502 aa | 107 | 1615 | + | No |
Chemistry : DDE
ORF sequence :
MISMEMMGKIRRMYFRDKLSLHEIAKRTGLARNTIRKWVRAPEAKQPVYQRRAIFNKLSPFHVTPEQALKADSLRPKQQRRSAKALLAQIKADGYDGGYS
QLTAFIRAWRGGQGKASQAFVPLTFALGEAFQFDWSEEGLLVGGIYRRMQVAHLKLCASRAFWLVAYPSQGHEMLFDAHTRSFGALGGVPRRGIYDNMKT
AVDKVNKGKGRAVNARFAVMCAHYLFDPDFCNVAAGWEKGIVEKNVQDSRRRIWLDAQDCQFHSFEELNAWLGQRCRALWNELTHPQYSGLSVAEVLELE
RAELMPVPAPFDGYVERPARVSSTCLVSVGRNRYSVPCEYAGKWVSSRLYPTRIEVVADDALIASHVRLLDRDQVSYDWQHYLPLIERKPGALRNGAPFA
DLPAPLRQLKHGLGRHAGGDRIMAQVLAAVPVAGLDAVLVAVELVLESGSLSAEHILNVVARLAATEPPPSVETHLSLKEAPVANTARYDRLRGQAEEVG
HA
QLTAFIRAWRGGQGKASQAFVPLTFALGEAFQFDWSEEGLLVGGIYRRMQVAHLKLCASRAFWLVAYPSQGHEMLFDAHTRSFGALGGVPRRGIYDNMKT
AVDKVNKGKGRAVNARFAVMCAHYLFDPDFCNVAAGWEKGIVEKNVQDSRRRIWLDAQDCQFHSFEELNAWLGQRCRALWNELTHPQYSGLSVAEVLELE
RAELMPVPAPFDGYVERPARVSSTCLVSVGRNRYSVPCEYAGKWVSSRLYPTRIEVVADDALIASHVRLLDRDQVSYDWQHYLPLIERKPGALRNGAPFA
DLPAPLRQLKHGLGRHAGGDRIMAQVLAAVPVAGLDAVLVAVELVLESGSLSAEHILNVVARLAATEPPPSVETHLSLKEAPVANTARYDRLRGQAEEVG
HA
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
792 bp | 263 aa | 1620 | 2411 | + | No |
AG : IS21 helper
ORF sequence :
MAELKELRLHGMATAWAELTAQGESNTASSKWLLEHLLEQEHTDRAMRSVSHQMNMAKLPMHRDLASFDFNASSADARLISELASLAFTDTAQNVVLIGG
PGTGKTHLATALAVSGITRHGKRVRFYSTVDLVNLLEREKHDGKAGRIAQALLRMDLVILDELGYLPFSQAGGALLFHLLSKLYEHTSVVITTNLSFAEW
SSVFGDAKMTTALLDRLTHHCHIVETGNESYRLQHSSLAAQAKIKSRERKRKGGQEPEDDESF
PGTGKTHLATALAVSGITRHGKRVRFYSTVDLVNLLEREKHDGKAGRIAQALLRMDLVILDELGYLPFSQAGGALLFHLLSKLYEHTSVVITTNLSFAEW
SSVFGDAKMTTALLDRLTHHCHIVETGNESYRLQHSSLAAQAKIKSRERKRKGGQEPEDDESF
Blast result :
Comments
ISPst3 is 90% (ORF1) and 94% (ORF2) aa similar to ISPsy20.
References
1] Shintani,M., Nojiri,H., Yoshida,T., Habe,H. and Omori,T.(2002) Direct submission GenBank.