ISfinder Mirror Site

ISRpa5

Family ISAs1
Group

MGE type ISRelated element(s) :
Isoform Synonym(s)

Accession number	Transposition	Origin	Host
NC_007925	ND	Rhodopseudomonas palustris	Rhodopseudomonas palustris BisB18

DNA section

IS Length : 1193 bp

Ends

IR Length : 15/17

IRL : CAGGGGAATCGCATGTGGGAATTTGTAAGCTGTTGCGAAGCGGAGGGAAA
IRR : CAGGGCTATCGCATGTGTTGGATGAGTTCGAAGAGGAACGTATCGTTCCA

Insertion site

Left flank	Direct repeat	Right flank	DR Length
GCGCTCCCCTCC	CCCTTGCGGG	GAGGGGAGCAGAGGC	10

DNA sequence

CAGGGGAATCGCATGTGGGAATTTGTAAGCTGTTGCGAAGCGGAGGGAAATTGATTCTGAAGGAGGCTCCCGATTCGGATGGAGCAGCCGATGGATCGAT
TTGCGGAGTGCTTCGAAGACCTGCCCGACCCGCGGGCGGGCAATGCGTTGCACGATCTGACCGAGATCTTGTTCATTGCCCTGATGGCGACGCTGTGCGG
GGCGACCAGTTGCACCGACATGGCGCTGTTTGCGCGGATGAAGGCCTATCTTTGGCGGGATGTGCTGGTCCTGAAGAACGGCCTTCCGAGCCACGACACG
TTCAGTCGGGTGTTCCGCATGCTGGACCCGGAGGCGTTCGAGAAGGCGTTCCAACGCTTCATGAAAGCCTTTGCCAAAGGCGCCAAGATCAAGCCGCCGA
AAGGGGTGATCGCCCTCGACGGCAAGGCGCTGCGGCGCGGCTACGAAAGCGGCAGAAGCCACATGCCGCCCGTGATGGTGACGGCCTGGGCGGCGCAGAC
CCGCATGGCGCTGGCCAATGTGCAGGCCCCGAACAACAACGAAGCCGCCGGTGCCTTGCAACTGATCGAACTTCTGCAGCTCAAAGGCTGCGTCGTGACG
GCCGATGCGCTGCATTGCCATCGTGGCATGGCCGAAGCGATCAAGGCCCGGGGCGGCGATTATGTGCTGGCCGTGAAGGACAACCAGCCAGCGCTGATGC
GGGATGCGAAGGCGGCAATCCGCGCCGCCACGCGCCAGGGCAAGCCATCGACGATCACCGTCGATGCCGGTCATGGACGCAAGGAAAAGCGCCGTGCTGT
CGTCGCCGCTGTCCCGCAGATGGCGCAAGACCACGACTTTGCCGGGCTCAAAGCGGTGGCCAGGATCACCAGCAAGCGCGGCACCGACAAGACCGTCGAG
CGTTACTTTCTGATGAGCCAGGCCTATCCCCCCAAAGACGTCCTGCGCATCGTCCGGACCCACTGGACCATCGAAAACAGCCTGCATTGGCCGCTCGACG
TCGTGCTCGACGAGGACTTGGCGCGCAATCGCAAGGACAACGCCCCCGCCAACCTCGCCGTGCTCAGACGCCTGGCCCTCAACGTCGCAAGGGCACATCC
AGACAACACCACATCGCTGCGTGGAAAGCTGAAACGTGCAGGATGGAACGATACGTTCCTCTTCGAACTCATCCAACACATGCGATAGCCCTG

Protein section

ORF number : 1

ORF 1

Length		Begin	End	Strand	Fusion ORF
1110 bp	369 aa	79	1188	+	No

ORF function : Transposase
Chemistry : Unknow

ORF sequence :

MEQPMDRFAECFEDLPDPRAGNALHDLTEILFIALMATLCGATSCTDMALFARMKAYLWRDVLVLKNGLPSHDTFSRVFRMLDPEAFEKAFQRFMKAFAK
GAKIKPPKGVIALDGKALRRGYESGRSHMPPVMVTAWAAQTRMALANVQAPNNNEAAGALQLIELLQLKGCVVTADALHCHRGMAEAIKARGGDYVLAVK
DNQPALMRDAKAAIRAATRQGKPSTITVDAGHGRKEKRRAVVAAVPQMAQDHDFAGLKAVARITSKRGTDKTVERYFLMSQAYPPKDVLRIVRTHWTIEN
SLHWPLDVVLDEDLARNRKDNAPANLAVLRRLALNVARAHPDNTTSLRGKLKRAGWNDTFLFELIQHMR

Blast result :

Comments

ISRpa5 is 56% aa similar to ISPto5.

References

1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F., Land,M., Hauser,L., Pelletier,D.A., Kyrpides,N., Anderson,I., Oda,Y., Harwood,C.S. and Richardson,P. (2006) Direct submission GenBank.